Wall clock time and date at job start Wed Apr 1 2020 00:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46846 * 2 1 4 4 C 1.50709 * 109.46435 * 180.02562 * 3 2 1 5 5 O 1.21270 * 120.00249 * 0.02562 * 4 3 2 6 6 N 1.34776 * 119.99590 * 180.02562 * 4 3 2 7 7 C 1.46496 * 120.00256 * 180.02562 * 6 4 3 8 8 H 1.08996 * 110.27016 * 35.63490 * 7 6 4 9 9 C 1.53997 * 110.30597 * 273.54836 * 7 6 4 10 10 N 1.47906 * 107.05390 * 242.20500 * 9 7 6 11 11 C 1.46904 * 110.99859 * 214.15598 * 10 9 7 12 12 C 1.50695 * 109.46798 * 170.00294 * 11 10 9 13 13 O 1.21274 * 120.00413 * 0.27179 * 12 11 10 14 14 N 1.34784 * 119.99635 * 180.02562 * 12 11 10 15 15 C 1.46499 * 119.99893 * 0.02562 * 14 12 11 16 16 C 1.52996 * 109.47198 * 90.00083 * 15 14 12 17 17 C 1.46499 * 119.99971 * 179.97438 * 14 12 11 18 18 C 1.50703 * 109.47219 * 89.99688 * 17 14 12 19 19 H 1.07996 * 119.99587 * 359.97438 * 18 17 14 20 20 C 1.37875 * 120.00012 * 180.02562 * 18 17 14 21 21 N 1.31516 * 119.99655 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 119.99994 * 0.02562 * 20 18 17 23 23 H 1.48495 * 109.46889 * 90.00281 * 22 20 18 24 24 H 1.48510 * 109.46825 * 210.00042 * 22 20 18 25 25 H 1.48494 * 109.47200 * 329.99914 * 22 20 18 26 26 C 1.48534 * 105.82161 * 334.67074 * 10 9 7 27 27 C 1.54597 * 110.39425 * 157.77920 * 7 6 4 28 28 H 1.08999 * 110.72322 * 22.38397 * 27 7 6 29 29 O 1.42901 * 110.72297 * 259.27282 * 27 7 6 30 30 H 1.09006 * 109.46982 * 299.99859 * 1 2 3 31 31 H 1.08994 * 109.47648 * 59.99322 * 1 2 3 32 32 H 1.08997 * 109.47473 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.46617 * 240.00827 * 2 1 3 34 34 H 1.08994 * 109.47648 * 120.00678 * 2 1 3 35 35 H 1.08997 * 109.46932 * 60.01035 * 3 2 1 36 36 H 1.08997 * 109.47408 * 300.00228 * 3 2 1 37 37 H 0.97004 * 119.99948 * 0.02562 * 6 4 3 38 38 H 1.09002 * 109.91861 * 122.85679 * 9 7 6 39 39 H 1.08994 * 110.08572 * 1.64653 * 9 7 6 40 40 H 1.09005 * 109.47078 * 50.00175 * 11 10 9 41 41 H 1.09002 * 109.47005 * 290.00391 * 11 10 9 42 42 H 1.08997 * 109.46865 * 210.00034 * 15 14 12 43 43 H 1.08998 * 109.47058 * 329.99547 * 15 14 12 44 44 H 1.08998 * 109.47221 * 179.97438 * 16 15 14 45 45 H 1.08997 * 109.47172 * 299.99762 * 16 15 14 46 46 H 1.08998 * 109.47554 * 59.99767 * 16 15 14 47 47 H 1.08998 * 109.47416 * 209.99869 * 17 14 12 48 48 H 1.09008 * 109.47058 * 330.00468 * 17 14 12 49 49 H 0.97008 * 119.99482 * 180.02562 * 21 20 18 50 50 H 1.09001 * 110.66846 * 157.64009 * 26 10 9 51 51 H 1.08994 * 110.66653 * 280.77052 * 26 10 9 52 52 H 0.96698 * 113.99629 * 179.97438 * 29 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5470 1.4425 -0.0006 5 8 4.1534 0.3922 -0.0015 6 7 4.2209 2.6097 -0.0002 7 6 5.6859 2.6097 -0.0014 8 1 6.0630 1.7792 -0.5981 9 6 6.2215 2.5192 1.4396 10 7 6.9905 3.7565 1.6950 11 6 8.1348 3.4923 2.5777 12 6 9.0279 4.7053 2.6188 13 8 8.7373 5.6944 1.9800 14 7 10.1474 4.6928 3.3694 15 6 10.4960 3.4997 4.1448 16 6 11.3646 2.5729 3.2918 17 6 11.0160 5.8718 3.4089 18 6 10.5781 6.7811 4.5281 19 1 9.7367 6.5082 5.1476 20 6 11.2511 7.9618 4.7604 21 7 10.8692 8.7550 5.7374 22 14 12.7052 8.4347 3.6874 23 1 12.2263 9.2254 2.5252 24 1 13.6611 9.2492 4.4801 25 1 13.3842 7.2057 3.2041 26 6 7.4443 4.2334 0.3636 27 6 6.2241 3.9516 -0.5487 28 1 5.4750 4.7371 -0.4491 29 8 6.6324 3.8147 -1.9113 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8898 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8898 35 1 1.6767 1.9563 0.8901 36 1 1.6766 1.9564 -0.8899 37 1 3.7359 3.4497 0.0009 38 1 6.8719 1.6503 1.5401 39 1 5.3923 2.4455 2.1432 40 1 8.6974 2.6394 2.1978 41 1 7.7750 3.2717 3.5827 42 1 11.0475 3.7949 5.0374 43 1 9.5851 2.9772 4.4368 44 1 11.6243 1.6855 3.8689 45 1 10.8131 2.2777 2.3992 46 1 12.2755 3.0955 2.9998 47 1 12.0464 5.5585 3.5773 48 1 10.9486 6.4048 2.4604 49 1 11.3425 9.5860 5.9006 50 1 7.6652 5.3004 0.3918 51 1 8.3139 3.6683 0.0284 52 1 6.9777 4.6290 -2.3021 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001190685045.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:23:40 Heat of formation + Delta-G solvation = -141.154941 kcal Electronic energy + Delta-G solvation = -30689.028087 eV Core-core repulsion = 26494.518980 eV Total energy + Delta-G solvation = -4194.509107 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.55138 -40.77410 -39.54750 -37.20047 -36.77321 -35.52298 -35.21762 -34.84295 -32.16447 -31.54501 -29.90038 -29.43207 -28.46006 -26.99081 -24.47440 -24.04407 -23.10922 -22.64938 -21.73619 -21.19993 -19.95137 -19.09889 -18.72066 -18.13261 -18.04044 -17.34542 -17.19307 -16.78332 -16.61119 -16.25028 -16.00600 -15.58010 -15.26502 -15.05187 -14.79802 -14.69376 -14.59508 -14.35006 -14.11766 -13.97595 -13.88170 -13.66565 -13.56475 -13.40758 -13.21211 -12.98629 -12.80314 -12.73298 -12.62342 -12.56314 -12.40077 -12.04330 -12.01686 -11.96204 -11.77857 -11.69843 -11.60545 -11.23091 -10.83127 -10.82729 -10.52452 -10.17736 -9.58047 -9.36550 -8.33571 -6.38358 1.32274 1.35738 1.44279 1.63290 1.75652 2.08770 2.16586 2.30526 2.73071 3.00532 3.20063 3.40539 3.60089 3.73627 3.87826 3.93876 4.05039 4.06662 4.14292 4.15108 4.20021 4.33505 4.37232 4.39272 4.52746 4.59274 4.61040 4.72980 4.76758 4.77176 4.78697 4.80419 4.88465 4.93222 4.95139 4.98560 5.03900 5.25416 5.30047 5.34243 5.41360 5.46422 5.49738 5.62676 5.68052 5.76472 6.24735 6.52501 6.63155 6.69745 6.71988 7.21926 7.24274 7.42105 8.83336 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.018592 B = 0.002195 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.664526 B =12754.187738 C =12942.316963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.110 4.110 3 C -0.133 4.133 4 C 0.509 3.491 5 O -0.585 6.585 6 N -0.710 5.710 7 C 0.148 3.852 8 H 0.084 0.916 9 C 0.035 3.965 10 N -0.507 5.507 11 C 0.039 3.961 12 C 0.500 3.500 13 O -0.571 6.571 14 N -0.600 5.600 15 C 0.097 3.903 16 C -0.160 4.160 17 C 0.228 3.772 18 C -0.533 4.533 19 H 0.028 0.972 20 C 0.010 3.990 21 N -0.945 5.945 22 Si 0.948 3.052 23 H -0.275 1.275 24 H -0.276 1.276 25 H -0.240 1.240 26 C 0.009 3.991 27 C 0.106 3.894 28 H 0.093 0.907 29 O -0.571 6.571 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.052 0.948 34 H 0.053 0.947 35 H 0.117 0.883 36 H 0.117 0.883 37 H 0.417 0.583 38 H 0.060 0.940 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.118 0.882 42 H 0.074 0.926 43 H 0.094 0.906 44 H 0.093 0.907 45 H 0.057 0.943 46 H 0.047 0.953 47 H 0.046 0.954 48 H 0.019 0.981 49 H 0.268 0.732 50 H 0.095 0.905 51 H 0.042 0.958 52 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.593 -17.070 -13.078 25.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.148 4.148 3 C -0.173 4.173 4 C 0.298 3.702 5 O -0.465 6.465 6 N -0.363 5.363 7 C 0.041 3.959 8 H 0.102 0.898 9 C -0.094 4.094 10 N -0.233 5.233 11 C -0.092 4.092 12 C 0.288 3.712 13 O -0.451 6.451 14 N -0.332 5.332 15 C -0.025 4.025 16 C -0.218 4.218 17 C 0.106 3.894 18 C -0.572 4.572 19 H 0.047 0.953 20 C -0.188 4.188 21 N -0.585 5.585 22 Si 0.771 3.229 23 H -0.201 1.201 24 H -0.201 1.201 25 H -0.163 1.163 26 C -0.119 4.119 27 C 0.045 3.955 28 H 0.111 0.889 29 O -0.379 6.379 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.135 0.865 36 H 0.135 0.865 37 H 0.254 0.746 38 H 0.078 0.922 39 H 0.110 0.890 40 H 0.105 0.895 41 H 0.136 0.864 42 H 0.092 0.908 43 H 0.112 0.888 44 H 0.112 0.888 45 H 0.076 0.924 46 H 0.067 0.933 47 H 0.064 0.936 48 H 0.037 0.963 49 H 0.077 0.923 50 H 0.113 0.887 51 H 0.061 0.939 52 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -14.771 -17.370 -12.955 26.225 hybrid contribution 1.364 1.161 -0.228 1.806 sum -13.407 -16.209 -13.184 24.825 Atomic orbital electron populations 1.21760 0.93753 1.02327 1.02728 1.21261 0.96669 0.94912 1.02003 1.21778 0.88547 1.00253 1.06682 1.21489 0.91851 0.82809 0.74079 1.90689 1.71672 1.32861 1.51269 1.45990 1.05666 1.09661 1.74963 1.21450 0.81339 0.97963 0.95106 0.89778 1.23327 0.98754 0.91038 0.96267 1.64594 1.20338 1.27113 1.11236 1.22287 0.91441 0.94547 1.00918 1.20963 0.81383 0.89702 0.79116 1.90563 1.72422 1.36541 1.45587 1.48042 1.23660 1.15731 1.45744 1.21770 1.01007 0.84928 0.94800 1.22150 0.99617 0.99632 1.00405 1.19269 0.90429 0.84203 0.95526 1.21550 1.15225 1.05242 1.15177 0.95348 1.25852 1.00670 0.95790 0.96481 1.70058 1.42940 1.12925 1.32575 0.85717 0.78886 0.79729 0.78609 1.20075 1.20142 1.16292 1.24004 0.96598 1.03074 0.88231 1.22833 0.95115 0.96103 0.81409 0.88937 1.86439 1.85467 1.41156 1.24830 0.91730 0.91679 0.92459 0.92935 0.92860 0.86463 0.86522 0.74588 0.92216 0.89016 0.89482 0.86400 0.90787 0.88771 0.88809 0.92436 0.93337 0.93604 0.96257 0.92323 0.88699 0.93920 0.74874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.91 71.98 0.71 -0.60 16 2 C -0.11 -1.49 5.22 30.60 0.16 -1.33 16 3 C -0.13 -1.45 5.70 29.85 0.17 -1.28 16 4 C 0.51 9.67 7.82 87.66 0.69 10.36 16 5 O -0.59 -16.41 15.68 -3.00 -0.05 -16.45 16 6 N -0.71 -11.80 5.03 -438.38 -2.21 -14.00 16 7 C 0.15 3.16 3.06 45.87 0.14 3.31 16 8 H 0.08 2.19 7.57 -2.39 -0.02 2.18 16 9 C 0.03 0.78 6.48 86.45 0.56 1.34 16 10 N -0.51 -13.86 5.26 -887.54 -4.67 -18.53 16 11 C 0.04 1.08 4.07 85.55 0.35 1.43 16 12 C 0.50 19.48 7.38 87.65 0.65 20.13 16 13 O -0.57 -26.91 13.11 -3.01 -0.04 -26.95 16 14 N -0.60 -23.66 2.46 -826.16 -2.03 -25.69 16 15 C 0.10 2.78 5.93 86.38 0.51 3.30 16 16 C -0.16 -3.51 10.24 71.98 0.74 -2.77 16 17 C 0.23 10.93 4.23 85.63 0.36 11.29 16 18 C -0.53 -31.16 9.94 25.60 0.25 -30.90 16 19 H 0.03 1.86 8.06 -2.91 -0.02 1.84 16 20 C 0.01 0.59 5.47 84.65 0.46 1.05 16 21 N -0.94 -59.57 13.96 21.45 0.30 -59.27 16 22 Si 0.95 44.17 27.47 68.60 1.88 46.05 16 23 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 24 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 25 H -0.24 -10.04 6.54 99.48 0.65 -9.38 16 26 C 0.01 0.25 5.03 86.65 0.44 0.69 16 27 C 0.11 2.21 4.15 31.80 0.13 2.34 16 28 H 0.09 1.67 7.74 -2.39 -0.02 1.65 16 29 O -0.57 -11.53 13.40 -148.98 -2.00 -13.52 16 30 H 0.06 0.47 8.14 -2.38 -0.02 0.45 16 31 H 0.06 0.45 8.14 -2.39 -0.02 0.44 16 32 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.05 0.87 8.10 -2.38 -0.02 0.85 16 34 H 0.05 0.88 8.10 -2.39 -0.02 0.86 16 35 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.42 4.57 8.35 -92.71 -0.77 3.80 16 38 H 0.06 1.30 7.57 -2.39 -0.02 1.28 16 39 H 0.09 1.99 7.93 -2.39 -0.02 1.97 16 40 H 0.09 1.99 6.86 -2.38 -0.02 1.97 16 41 H 0.12 2.95 7.40 -2.39 -0.02 2.94 16 42 H 0.07 2.30 8.07 -2.39 -0.02 2.28 16 43 H 0.09 2.18 6.44 -2.39 -0.02 2.16 16 44 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 45 H 0.06 1.18 7.22 -2.39 -0.02 1.17 16 46 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 47 H 0.05 2.04 7.13 -2.39 -0.02 2.02 16 48 H 0.02 0.99 6.85 -2.38 -0.02 0.97 16 49 H 0.27 15.69 8.31 -92.70 -0.77 14.92 16 50 H 0.09 3.19 5.97 -2.39 -0.01 3.18 16 51 H 0.04 1.20 8.02 -2.39 -0.02 1.18 16 52 H 0.40 5.11 9.12 -74.06 -0.68 4.44 16 Total: -1.00 -82.95 413.56 -3.06 -86.01 By element: Atomic # 1 Polarization: 24.59 SS G_CDS: -0.58 Total: 24.01 kcal Atomic # 6 Polarization: 12.03 SS G_CDS: 6.32 Total: 18.35 kcal Atomic # 7 Polarization: -108.89 SS G_CDS: -8.60 Total: -117.49 kcal Atomic # 8 Polarization: -54.84 SS G_CDS: -2.08 Total: -56.92 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 1.88 Total: 46.05 kcal Total: -82.95 -3.06 -86.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190685045.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.145 kcal (2) G-P(sol) polarization free energy of solvation -82.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds