Wall clock time and date at job start Wed Apr 1 2020 00:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46472 * 2 1 4 4 H 1.08997 * 109.47101 * 305.00013 * 3 2 1 5 5 C 1.53001 * 109.46711 * 185.00168 * 3 2 1 6 6 O 1.42898 * 109.47196 * 65.00221 * 3 2 1 7 7 C 1.42900 * 114.00017 * 209.99490 * 6 3 2 8 8 C 1.50699 * 109.46944 * 179.97438 * 7 6 3 9 9 O 1.21282 * 120.00276 * 0.02562 * 8 7 6 10 10 N 1.34774 * 119.99588 * 180.02562 * 8 7 6 11 11 C 1.44677 * 118.55130 * 0.02562 * 10 8 7 12 12 C 1.54946 * 109.51988 * 269.08283 * 11 10 8 13 13 C 1.47538 * 109.73830 * 290.51624 * 12 11 10 14 14 N 1.46264 * 114.37394 * 62.21570 * 13 12 11 15 15 C 1.46900 * 111.00281 * 148.55737 * 14 13 12 16 16 C 1.50699 * 109.46850 * 64.05597 * 15 14 13 17 17 O 1.21293 * 120.00042 * 4.77970 * 16 15 14 18 18 N 1.34783 * 119.99831 * 184.77180 * 16 15 14 19 19 C 1.37098 * 119.99690 * 180.02562 * 18 16 15 20 20 H 1.07994 * 120.00105 * 359.97438 * 19 18 16 21 21 C 1.38950 * 119.99621 * 180.02562 * 19 18 16 22 22 N 1.31406 * 120.00150 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99719 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47359 * 59.99605 * 23 21 19 25 25 H 1.48500 * 109.47281 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.47305 * 299.99626 * 23 21 19 27 27 C 1.44765 * 110.64668 * 272.26007 * 14 13 12 28 28 C 1.47782 * 118.54861 * 179.73740 * 10 8 7 29 29 H 1.09005 * 109.47028 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47442 * 299.99583 * 1 2 3 31 31 H 1.08997 * 109.47725 * 60.00323 * 1 2 3 32 32 H 1.09000 * 109.47024 * 240.00131 * 2 1 3 33 33 H 1.08999 * 109.47219 * 119.99800 * 2 1 3 34 34 H 1.09004 * 109.47301 * 59.99945 * 5 3 2 35 35 H 1.08998 * 109.46893 * 180.02562 * 5 3 2 36 36 H 1.09007 * 109.46734 * 299.99830 * 5 3 2 37 37 H 1.08998 * 109.46885 * 300.00429 * 7 6 3 38 38 H 1.09007 * 109.46702 * 60.00107 * 7 6 3 39 39 H 1.09000 * 109.46071 * 29.10047 * 11 10 8 40 40 H 1.09004 * 109.46603 * 149.07801 * 11 10 8 41 41 H 1.08997 * 109.42704 * 50.59994 * 12 11 10 42 42 H 1.09001 * 109.42626 * 170.43684 * 12 11 10 43 43 H 1.08996 * 108.50490 * 183.48438 * 13 12 11 44 44 H 1.09000 * 108.50426 * 300.95149 * 13 12 11 45 45 H 1.08999 * 109.47091 * 184.05955 * 15 14 13 46 46 H 1.08998 * 109.47061 * 304.05983 * 15 14 13 47 47 H 0.96993 * 119.99859 * 0.02562 * 18 16 15 48 48 H 0.97006 * 120.00112 * 180.02562 * 22 21 19 49 49 H 1.09000 * 109.43602 * 214.22489 * 27 14 13 50 50 H 1.08998 * 109.43159 * 334.13418 * 27 14 13 51 51 H 1.09000 * 109.06319 * 258.64606 * 28 10 8 52 52 H 1.09003 * 109.06242 * 17.57122 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 -0.8418 5 6 3.5647 1.4445 -0.1258 6 8 1.6618 2.0814 1.2210 7 6 1.4558 3.4903 1.1003 8 6 1.0625 4.0571 2.4402 9 8 0.9684 3.3265 3.4037 10 7 0.8153 5.3758 2.5677 11 6 0.9363 6.2183 1.3977 12 6 2.3805 6.7718 1.3055 13 6 2.6118 7.7440 2.3909 14 7 2.5046 7.1825 3.7372 15 6 3.4044 7.8746 4.6695 16 6 2.9801 9.3146 4.8015 17 8 1.9726 9.7030 4.2489 18 7 3.7200 10.1708 5.5336 19 6 3.3337 11.4807 5.6540 20 1 2.4367 11.8265 5.1619 21 6 4.0968 12.3635 6.4083 22 7 5.1885 11.9428 7.0066 23 14 3.5708 14.1484 6.5718 24 1 2.2253 14.2127 7.1968 25 1 4.5465 14.8761 7.4225 26 1 3.5221 14.7754 5.2265 27 6 1.1352 7.2331 4.2038 28 6 0.4263 5.8963 3.8949 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.8531 0.9572 -1.0572 35 1 3.9280 2.4722 -0.1253 36 1 3.9994 0.9055 0.7161 37 1 2.3767 3.9644 0.7609 38 1 0.6616 3.6808 0.3784 39 1 0.7134 5.6341 0.5049 40 1 0.2336 7.0481 1.4734 41 1 3.0904 5.9498 1.3977 42 1 2.5195 7.2635 0.3427 43 1 3.6095 8.1660 2.2706 44 1 1.8850 8.5505 2.2936 45 1 3.3582 7.3913 5.6454 46 1 4.4252 7.8300 4.2899 47 1 4.5258 9.8602 5.9752 48 1 5.7211 12.5590 7.5335 49 1 1.1248 7.4093 5.2794 50 1 0.6096 8.0434 3.6985 51 1 -0.6529 6.0480 3.9155 52 1 0.6963 5.1654 4.6571 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001195523350.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:46:25 Heat of formation + Delta-G solvation = -109.923456 kcal Electronic energy + Delta-G solvation = -31059.338534 eV Core-core repulsion = 26866.183726 eV Total energy + Delta-G solvation = -4193.154808 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.39907 -39.17636 -38.34597 -37.06823 -34.99078 -34.05355 -33.80310 -32.66991 -31.37478 -30.25338 -29.71703 -27.68547 -26.43292 -25.58353 -24.08871 -23.88803 -22.05761 -21.30904 -20.70110 -19.27812 -18.95392 -17.90887 -17.50292 -17.01274 -16.37320 -16.13011 -15.92960 -15.34073 -15.15977 -14.81378 -14.48190 -14.42062 -14.15339 -13.92734 -13.88706 -13.84633 -13.35856 -13.34998 -13.11590 -12.88211 -12.71251 -12.41078 -12.22173 -12.05080 -11.83816 -11.63705 -11.62412 -11.46227 -11.31908 -11.24912 -11.18370 -10.91145 -10.83689 -10.70513 -10.49970 -10.38734 -10.29681 -9.82967 -9.59072 -9.56227 -9.14971 -8.52114 -8.05549 -7.61872 -6.49314 -3.91017 2.63116 2.76759 3.13062 3.20352 3.24040 3.66670 3.79443 4.10045 4.20311 4.41207 4.59719 4.67957 4.73925 4.80865 4.86878 4.93681 4.97116 5.03087 5.05418 5.16784 5.24872 5.29310 5.34561 5.36434 5.38180 5.41024 5.55171 5.64380 5.69673 5.74435 5.75379 5.84248 5.85633 5.89928 5.96423 6.01623 6.06057 6.08779 6.17239 6.18115 6.41359 6.51955 6.61930 6.92032 7.33135 7.45012 7.46662 7.47713 7.96065 8.27050 8.50942 9.08342 9.44869 9.94704 10.67173 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.029129 B = 0.002037 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.019808 B =13743.225003 C =13933.129632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C 0.083 3.917 4 H 0.060 0.940 5 C -0.177 4.177 6 O -0.355 6.355 7 C 0.046 3.954 8 C 0.514 3.486 9 O -0.526 6.526 10 N -0.589 5.589 11 C 0.108 3.892 12 C -0.132 4.132 13 C 0.052 3.948 14 N -0.507 5.507 15 C 0.045 3.955 16 C 0.405 3.595 17 O -0.598 6.598 18 N -0.556 5.556 19 C -0.303 4.303 20 H 0.102 0.898 21 C 0.024 3.976 22 N -0.898 5.898 23 Si 0.931 3.069 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.274 1.274 27 C 0.051 3.949 28 C 0.120 3.880 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.049 0.951 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.080 0.920 41 H 0.066 0.934 42 H 0.077 0.923 43 H 0.059 0.941 44 H 0.060 0.940 45 H 0.090 0.910 46 H 0.087 0.913 47 H 0.393 0.607 48 H 0.273 0.727 49 H 0.075 0.925 50 H 0.067 0.933 51 H 0.062 0.938 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.058 -17.930 -15.623 24.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C 0.025 3.975 4 H 0.078 0.922 5 C -0.234 4.234 6 O -0.273 6.273 7 C -0.034 4.034 8 C 0.300 3.700 9 O -0.401 6.401 10 N -0.323 5.323 11 C -0.016 4.016 12 C -0.172 4.172 13 C -0.076 4.076 14 N -0.229 5.229 15 C -0.087 4.087 16 C 0.190 3.810 17 O -0.485 6.485 18 N -0.191 5.191 19 C -0.433 4.433 20 H 0.119 0.881 21 C -0.178 4.178 22 N -0.538 5.538 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.209 1.209 26 H -0.199 1.199 27 C -0.078 4.078 28 C -0.002 4.002 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.099 0.901 41 H 0.085 0.915 42 H 0.096 0.904 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.108 0.892 46 H 0.105 0.895 47 H 0.226 0.774 48 H 0.083 0.917 49 H 0.094 0.906 50 H 0.085 0.915 51 H 0.080 0.920 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.515 -18.529 -15.179 24.579 hybrid contribution 0.329 1.998 0.170 2.032 sum -5.186 -16.531 -15.009 22.923 Atomic orbital electron populations 1.21743 0.95354 1.01644 1.02243 1.21623 0.96676 0.94718 1.02728 1.22216 0.94364 0.94133 0.86786 0.92207 1.22312 0.96032 1.02597 1.02497 1.88060 1.89326 1.18107 1.31815 1.22338 1.01209 0.83907 0.95950 1.20178 0.77443 0.82379 0.89990 1.90695 1.50899 1.58469 1.40063 1.47490 1.68167 1.06514 1.10127 1.21671 0.97673 0.95150 0.87130 1.21477 0.96755 1.00183 0.98737 1.20929 1.02385 0.95849 0.88421 1.61256 1.06773 1.53092 1.01781 1.22220 0.97286 0.91552 0.97646 1.21047 0.86731 0.88447 0.84739 1.90476 1.27560 1.78808 1.51663 1.42012 1.24181 1.09328 1.43593 1.19648 1.09786 0.84493 1.29393 0.88051 1.25293 0.95548 1.00606 0.96368 1.69601 1.14911 1.36769 1.32537 0.85919 0.78325 0.81599 0.78383 1.19883 1.20884 1.19913 1.22364 0.89283 0.95049 1.01134 1.22173 0.97444 0.96915 0.83712 0.92752 0.91719 0.93159 0.90776 0.90879 0.91630 0.92338 0.91535 0.90356 0.90803 0.90867 0.90133 0.91484 0.90429 0.92228 0.92214 0.89193 0.89505 0.77361 0.91674 0.90622 0.91453 0.92015 0.89344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.81 37.16 0.36 -0.80 16 2 C -0.12 -0.91 5.64 -26.73 -0.15 -1.06 16 3 C 0.08 0.69 2.72 -26.73 -0.07 0.62 16 4 H 0.06 0.41 7.79 -51.93 -0.40 0.00 16 5 C -0.18 -1.33 9.53 37.16 0.35 -0.97 16 6 O -0.35 -4.27 9.06 -55.14 -0.50 -4.77 16 7 C 0.05 0.48 4.70 36.01 0.17 0.65 16 8 C 0.51 7.22 7.70 -10.99 -0.08 7.14 16 9 O -0.53 -9.64 15.78 -14.35 -0.23 -9.87 16 10 N -0.59 -7.50 2.53 -171.96 -0.43 -7.94 16 11 C 0.11 1.08 5.23 -3.99 -0.02 1.06 16 12 C -0.13 -1.43 5.95 -28.34 -0.17 -1.60 16 13 C 0.05 0.77 4.08 -6.80 -0.03 0.74 16 14 N -0.51 -8.09 4.38 -240.78 -1.05 -9.15 16 15 C 0.04 0.77 5.48 -4.98 -0.03 0.74 16 16 C 0.41 8.96 7.10 -10.98 -0.08 8.89 16 17 O -0.60 -14.66 12.13 5.55 0.07 -14.59 16 18 N -0.56 -13.61 5.29 -10.96 -0.06 -13.67 16 19 C -0.30 -8.22 9.68 -14.93 -0.14 -8.37 16 20 H 0.10 2.88 7.16 -52.49 -0.38 2.50 16 21 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 22 N -0.90 -24.02 13.05 55.50 0.72 -23.29 16 23 Si 0.93 20.66 29.55 -169.99 -5.02 15.64 16 24 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 25 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 26 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 27 C 0.05 0.81 4.13 -4.22 -0.02 0.79 16 28 C 0.12 1.67 6.49 -2.59 -0.02 1.65 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.63 7.82 -51.93 -0.41 0.22 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.06 0.44 7.87 -51.93 -0.41 0.03 16 36 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 37 H 0.08 0.70 7.00 -51.93 -0.36 0.34 16 38 H 0.07 0.58 7.24 -51.93 -0.38 0.21 16 39 H 0.07 0.52 6.18 -51.93 -0.32 0.20 16 40 H 0.08 0.82 8.09 -51.93 -0.42 0.40 16 41 H 0.07 0.74 7.42 -51.93 -0.39 0.36 16 42 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.93 7.54 -51.93 -0.39 0.53 16 44 H 0.06 1.02 6.03 -51.93 -0.31 0.71 16 45 H 0.09 1.47 8.07 -51.93 -0.42 1.05 16 46 H 0.09 1.39 7.92 -51.93 -0.41 0.98 16 47 H 0.39 9.33 7.90 -40.82 -0.32 9.00 16 48 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 49 H 0.08 1.28 7.47 -51.93 -0.39 0.89 16 50 H 0.07 1.18 6.07 -51.93 -0.32 0.86 16 51 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 52 H 0.09 1.37 6.96 -51.93 -0.36 1.01 16 LS Contribution 404.80 15.07 6.10 6.10 Total: -1.00 -32.58 404.80 -9.32 -41.91 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: -8.90 Total: 9.61 kcal Atomic # 6 Polarization: 10.04 SS G_CDS: -0.02 Total: 10.02 kcal Atomic # 7 Polarization: -53.23 SS G_CDS: -0.82 Total: -54.05 kcal Atomic # 8 Polarization: -28.57 SS G_CDS: -0.66 Total: -29.22 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -32.58 -9.32 -41.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195523350.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.018 kcal (2) G-P(sol) polarization free energy of solvation -32.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds