Wall clock time and date at job start Wed Apr 1 2020 00:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46472 * 2 1 4 4 H 1.08997 * 109.47101 * 305.00013 * 3 2 1 5 5 C 1.53001 * 109.46711 * 185.00168 * 3 2 1 6 6 O 1.42898 * 109.47196 * 65.00221 * 3 2 1 7 7 C 1.42900 * 114.00017 * 209.99490 * 6 3 2 8 8 C 1.50699 * 109.46944 * 179.97438 * 7 6 3 9 9 O 1.21282 * 120.00276 * 0.02562 * 8 7 6 10 10 N 1.34774 * 119.99588 * 180.02562 * 8 7 6 11 11 C 1.44677 * 118.55130 * 0.02562 * 10 8 7 12 12 C 1.54946 * 109.51988 * 269.08283 * 11 10 8 13 13 C 1.47538 * 109.73830 * 290.51624 * 12 11 10 14 14 N 1.46264 * 114.37394 * 62.21570 * 13 12 11 15 15 C 1.46900 * 111.00281 * 148.55737 * 14 13 12 16 16 C 1.50699 * 109.46850 * 64.05597 * 15 14 13 17 17 O 1.21293 * 120.00042 * 4.77970 * 16 15 14 18 18 N 1.34783 * 119.99831 * 184.77180 * 16 15 14 19 19 C 1.37098 * 119.99690 * 180.02562 * 18 16 15 20 20 H 1.07994 * 120.00105 * 359.97438 * 19 18 16 21 21 C 1.38950 * 119.99621 * 180.02562 * 19 18 16 22 22 N 1.31406 * 120.00150 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99719 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47359 * 59.99605 * 23 21 19 25 25 H 1.48500 * 109.47281 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.47305 * 299.99626 * 23 21 19 27 27 C 1.44765 * 110.64668 * 272.26007 * 14 13 12 28 28 C 1.47782 * 118.54861 * 179.73740 * 10 8 7 29 29 H 1.09005 * 109.47028 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47442 * 299.99583 * 1 2 3 31 31 H 1.08997 * 109.47725 * 60.00323 * 1 2 3 32 32 H 1.09000 * 109.47024 * 240.00131 * 2 1 3 33 33 H 1.08999 * 109.47219 * 119.99800 * 2 1 3 34 34 H 1.09004 * 109.47301 * 59.99945 * 5 3 2 35 35 H 1.08998 * 109.46893 * 180.02562 * 5 3 2 36 36 H 1.09007 * 109.46734 * 299.99830 * 5 3 2 37 37 H 1.08998 * 109.46885 * 300.00429 * 7 6 3 38 38 H 1.09007 * 109.46702 * 60.00107 * 7 6 3 39 39 H 1.09000 * 109.46071 * 29.10047 * 11 10 8 40 40 H 1.09004 * 109.46603 * 149.07801 * 11 10 8 41 41 H 1.08997 * 109.42704 * 50.59994 * 12 11 10 42 42 H 1.09001 * 109.42626 * 170.43684 * 12 11 10 43 43 H 1.08996 * 108.50490 * 183.48438 * 13 12 11 44 44 H 1.09000 * 108.50426 * 300.95149 * 13 12 11 45 45 H 1.08999 * 109.47091 * 184.05955 * 15 14 13 46 46 H 1.08998 * 109.47061 * 304.05983 * 15 14 13 47 47 H 0.96993 * 119.99859 * 0.02562 * 18 16 15 48 48 H 0.97006 * 120.00112 * 180.02562 * 22 21 19 49 49 H 1.09000 * 109.43602 * 214.22489 * 27 14 13 50 50 H 1.08998 * 109.43159 * 334.13418 * 27 14 13 51 51 H 1.09000 * 109.06319 * 258.64606 * 28 10 8 52 52 H 1.09003 * 109.06242 * 17.57122 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 -0.8418 5 6 3.5647 1.4445 -0.1258 6 8 1.6618 2.0814 1.2210 7 6 1.4558 3.4903 1.1003 8 6 1.0625 4.0571 2.4402 9 8 0.9684 3.3265 3.4037 10 7 0.8153 5.3758 2.5677 11 6 0.9363 6.2183 1.3977 12 6 2.3805 6.7718 1.3055 13 6 2.6118 7.7440 2.3909 14 7 2.5046 7.1825 3.7372 15 6 3.4044 7.8746 4.6695 16 6 2.9801 9.3146 4.8015 17 8 1.9726 9.7030 4.2489 18 7 3.7200 10.1708 5.5336 19 6 3.3337 11.4807 5.6540 20 1 2.4367 11.8265 5.1619 21 6 4.0968 12.3635 6.4083 22 7 5.1885 11.9428 7.0066 23 14 3.5708 14.1484 6.5718 24 1 2.2253 14.2127 7.1968 25 1 4.5465 14.8761 7.4225 26 1 3.5221 14.7754 5.2265 27 6 1.1352 7.2331 4.2038 28 6 0.4263 5.8963 3.8949 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.8531 0.9572 -1.0572 35 1 3.9280 2.4722 -0.1253 36 1 3.9994 0.9055 0.7161 37 1 2.3767 3.9644 0.7609 38 1 0.6616 3.6808 0.3784 39 1 0.7134 5.6341 0.5049 40 1 0.2336 7.0481 1.4734 41 1 3.0904 5.9498 1.3977 42 1 2.5195 7.2635 0.3427 43 1 3.6095 8.1660 2.2706 44 1 1.8850 8.5505 2.2936 45 1 3.3582 7.3913 5.6454 46 1 4.4252 7.8300 4.2899 47 1 4.5258 9.8602 5.9752 48 1 5.7211 12.5590 7.5335 49 1 1.1248 7.4093 5.2794 50 1 0.6096 8.0434 3.6985 51 1 -0.6529 6.0480 3.9155 52 1 0.6963 5.1654 4.6571 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001195523350.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:46:24 Heat of formation + Delta-G solvation = -132.150143 kcal Electronic energy + Delta-G solvation = -31060.302356 eV Core-core repulsion = 26866.183726 eV Total energy + Delta-G solvation = -4194.118630 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.53622 -40.58592 -39.26967 -38.43298 -36.38010 -35.59894 -34.71675 -33.74318 -33.33753 -31.13770 -30.66729 -28.78358 -27.67251 -26.94609 -25.65706 -24.52068 -23.09758 -22.07403 -21.91040 -20.93218 -20.05808 -19.79863 -18.36838 -18.08068 -17.65392 -17.30195 -17.02157 -16.69586 -16.36003 -16.30066 -15.76047 -15.69483 -15.51261 -15.18426 -14.85832 -14.73807 -14.48331 -14.29225 -14.21877 -13.83355 -13.70678 -13.65298 -13.48193 -13.23188 -12.94666 -12.90710 -12.70485 -12.53315 -12.47000 -12.38095 -12.22471 -12.19341 -12.14989 -11.89588 -11.83027 -11.64950 -11.42989 -11.40650 -10.86594 -10.67782 -10.52092 -10.03959 -9.58495 -9.15282 -8.48300 -5.98368 1.36154 1.39151 1.49761 1.61511 1.83464 1.99481 2.26713 2.83282 3.01081 3.17890 3.21666 3.61220 3.85444 3.94024 4.00533 4.03734 4.10994 4.14751 4.23779 4.26157 4.26650 4.32345 4.39137 4.47405 4.52573 4.59610 4.69255 4.71560 4.71967 4.76707 4.80980 4.81876 4.85618 4.92292 5.06782 5.09658 5.10583 5.13947 5.25543 5.33913 5.36910 5.40114 5.47025 5.58431 5.89511 6.03036 6.16708 6.22355 6.50288 6.55426 7.08486 7.23773 7.52210 8.05490 8.67147 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.029129 B = 0.002037 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.019808 B =13743.225003 C =13933.129632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.121 4.121 3 C 0.077 3.923 4 H 0.084 0.916 5 C -0.175 4.175 6 O -0.389 6.389 7 C 0.050 3.950 8 C 0.507 3.493 9 O -0.579 6.579 10 N -0.587 5.587 11 C 0.104 3.896 12 C -0.126 4.126 13 C 0.054 3.946 14 N -0.503 5.503 15 C 0.053 3.947 16 C 0.410 3.590 17 O -0.622 6.622 18 N -0.570 5.570 19 C -0.333 4.333 20 H 0.080 0.920 21 C -0.013 4.013 22 N -0.919 5.919 23 Si 0.992 3.008 24 H -0.273 1.273 25 H -0.272 1.272 26 H -0.271 1.271 27 C 0.060 3.940 28 C 0.128 3.872 29 H 0.060 0.940 30 H 0.037 0.963 31 H 0.064 0.936 32 H 0.098 0.902 33 H 0.054 0.946 34 H 0.086 0.914 35 H 0.059 0.941 36 H 0.048 0.952 37 H 0.099 0.901 38 H 0.107 0.893 39 H 0.114 0.886 40 H 0.079 0.921 41 H 0.071 0.929 42 H 0.108 0.892 43 H 0.050 0.950 44 H 0.033 0.967 45 H 0.102 0.898 46 H 0.106 0.894 47 H 0.395 0.605 48 H 0.278 0.722 49 H 0.059 0.941 50 H 0.049 0.951 51 H 0.076 0.924 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.956 -18.431 -18.249 26.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C 0.020 3.980 4 H 0.101 0.899 5 C -0.233 4.233 6 O -0.308 6.308 7 C -0.029 4.029 8 C 0.296 3.704 9 O -0.459 6.459 10 N -0.320 5.320 11 C -0.019 4.019 12 C -0.164 4.164 13 C -0.073 4.073 14 N -0.225 5.225 15 C -0.079 4.079 16 C 0.197 3.803 17 O -0.509 6.509 18 N -0.207 5.207 19 C -0.463 4.463 20 H 0.098 0.902 21 C -0.213 4.213 22 N -0.560 5.560 23 Si 0.816 3.184 24 H -0.198 1.198 25 H -0.196 1.196 26 H -0.196 1.196 27 C -0.069 4.069 28 C 0.004 3.996 29 H 0.079 0.921 30 H 0.057 0.943 31 H 0.083 0.917 32 H 0.116 0.884 33 H 0.073 0.927 34 H 0.105 0.895 35 H 0.078 0.922 36 H 0.067 0.933 37 H 0.117 0.883 38 H 0.125 0.875 39 H 0.132 0.868 40 H 0.098 0.902 41 H 0.089 0.911 42 H 0.126 0.874 43 H 0.068 0.932 44 H 0.051 0.949 45 H 0.120 0.880 46 H 0.124 0.876 47 H 0.229 0.771 48 H 0.087 0.913 49 H 0.078 0.922 50 H 0.068 0.932 51 H 0.095 0.905 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.409 -19.030 -17.842 26.641 hybrid contribution 0.262 2.102 0.945 2.320 sum -5.147 -16.928 -16.896 24.465 Atomic orbital electron populations 1.21718 0.95520 1.01932 1.01597 1.21671 0.96526 0.94636 1.02998 1.22446 0.94933 0.94325 0.86259 0.89852 1.22309 0.95433 1.02671 1.02845 1.88039 1.89738 1.18915 1.34112 1.22408 1.03131 0.83485 0.93880 1.20942 0.76339 0.82189 0.90974 1.90670 1.53324 1.59739 1.42146 1.47593 1.67414 1.06745 1.10202 1.21915 0.97148 0.95418 0.87390 1.21455 0.97313 0.99394 0.98288 1.21020 1.00997 0.96497 0.88817 1.61450 1.06567 1.52206 1.02249 1.22263 0.98490 0.88118 0.99021 1.21981 0.85638 0.89957 0.82765 1.90466 1.28524 1.79842 1.52101 1.42096 1.24794 1.09042 1.44721 1.19616 1.09844 0.86142 1.30659 0.90212 1.26057 0.95420 1.04236 0.95637 1.69669 1.15469 1.38050 1.32786 0.84999 0.78055 0.76896 0.78455 1.19808 1.19627 1.19609 1.22230 0.89221 0.95611 0.99880 1.21955 0.97976 0.95047 0.84576 0.92099 0.94331 0.91695 0.88376 0.92702 0.89509 0.92206 0.93294 0.88303 0.87495 0.86766 0.90241 0.91050 0.87397 0.93156 0.94876 0.87972 0.87599 0.77135 0.91294 0.92239 0.93228 0.90548 0.91153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.81 71.98 0.71 -1.37 16 2 C -0.12 -1.62 5.64 30.60 0.17 -1.44 16 3 C 0.08 1.10 2.72 30.60 0.08 1.18 16 4 H 0.08 0.79 7.79 -2.39 -0.02 0.77 16 5 C -0.18 -2.21 9.53 71.98 0.69 -1.53 16 6 O -0.39 -8.75 9.06 -129.94 -1.18 -9.92 16 7 C 0.05 0.90 4.70 71.24 0.33 1.23 16 8 C 0.51 13.61 7.70 87.66 0.68 14.28 16 9 O -0.58 -21.53 15.78 16.00 0.25 -21.27 16 10 N -0.59 -14.06 2.53 -816.35 -2.06 -16.13 16 11 C 0.10 1.77 5.23 87.39 0.46 2.23 16 12 C -0.13 -2.35 5.95 29.55 0.18 -2.17 16 13 C 0.05 1.56 4.08 84.72 0.35 1.91 16 14 N -0.50 -15.89 4.38 -915.69 -4.01 -19.90 16 15 C 0.05 1.82 5.48 85.56 0.47 2.29 16 16 C 0.41 18.51 7.10 87.66 0.62 19.13 16 17 O -0.62 -31.31 12.13 -3.07 -0.04 -31.35 16 18 N -0.57 -28.58 5.29 -306.98 -1.62 -30.20 16 19 C -0.33 -18.48 9.68 84.04 0.81 -17.66 16 20 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 21 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 22 N -0.92 -49.33 13.05 21.66 0.28 -49.05 16 23 Si 0.99 42.39 29.55 68.60 2.03 44.42 16 24 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 25 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 26 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 27 C 0.06 1.94 4.13 87.19 0.36 2.30 16 28 C 0.13 3.56 6.49 86.62 0.56 4.12 16 29 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 30 H 0.04 0.73 7.82 -2.39 -0.02 0.71 16 31 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.09 0.71 8.14 -2.38 -0.02 0.69 16 35 H 0.06 0.73 7.87 -2.39 -0.02 0.71 16 36 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 37 H 0.10 1.37 7.00 -2.39 -0.02 1.35 16 38 H 0.11 1.19 7.24 -2.38 -0.02 1.18 16 39 H 0.11 1.07 6.18 -2.39 -0.01 1.05 16 40 H 0.08 1.43 8.09 -2.38 -0.02 1.41 16 41 H 0.07 1.33 7.42 -2.39 -0.02 1.31 16 42 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.05 1.52 7.54 -2.39 -0.02 1.50 16 44 H 0.03 1.13 6.03 -2.39 -0.01 1.12 16 45 H 0.10 3.31 8.07 -2.39 -0.02 3.29 16 46 H 0.11 3.29 7.92 -2.39 -0.02 3.27 16 47 H 0.40 19.13 7.90 -92.71 -0.73 18.40 16 48 H 0.28 14.02 8.31 -92.70 -0.77 13.25 16 49 H 0.06 2.08 7.47 -2.39 -0.02 2.06 16 50 H 0.05 1.78 6.07 -2.39 -0.01 1.77 16 51 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 52 H 0.07 2.25 6.96 -2.39 -0.02 2.23 16 Total: -1.00 -73.84 404.80 0.77 -73.08 By element: Atomic # 1 Polarization: 35.90 SS G_CDS: 0.18 Total: 36.08 kcal Atomic # 6 Polarization: 17.32 SS G_CDS: 6.93 Total: 24.25 kcal Atomic # 7 Polarization: -107.87 SS G_CDS: -7.41 Total: -115.28 kcal Atomic # 8 Polarization: -61.59 SS G_CDS: -0.96 Total: -62.55 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Total: -73.84 0.77 -73.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195523350.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.072 kcal (2) G-P(sol) polarization free energy of solvation -73.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds