Wall clock time and date at job start Wed Apr 1 2020 00:36:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52991 * 109.47357 * 2 1 4 4 H 1.09005 * 109.47297 * 304.99771 * 3 2 1 5 5 C 1.53000 * 109.47214 * 64.99906 * 3 2 1 6 6 C 1.50705 * 109.47302 * 184.99852 * 3 2 1 7 7 O 1.21277 * 119.99523 * 332.75981 * 6 3 2 8 8 N 1.34770 * 120.00014 * 152.75391 * 6 3 2 9 9 C 1.47510 * 118.76083 * 4.98348 * 8 6 3 10 10 C 1.53945 * 110.82275 * 138.24757 * 9 8 6 11 11 C 1.51536 * 109.72960 * 320.30730 * 10 9 8 12 12 O 1.42164 * 108.76388 * 91.29214 * 11 10 9 13 13 C 1.38015 * 119.43587 * 272.78542 * 12 11 10 14 14 H 1.09004 * 109.46788 * 303.42228 * 13 12 11 15 15 C 1.53002 * 109.46860 * 183.43122 * 13 12 11 16 16 N 1.46901 * 109.47198 * 64.98277 * 15 13 12 17 17 C 1.46895 * 111.00124 * 179.97438 * 16 15 13 18 18 C 1.50699 * 109.47248 * 180.02562 * 17 16 15 19 19 O 1.21297 * 119.99918 * 0.02562 * 18 17 16 20 20 N 1.34774 * 120.00484 * 179.97438 * 18 17 16 21 21 C 1.37096 * 120.00396 * 179.97438 * 20 18 17 22 22 H 1.07996 * 120.00091 * 0.02562 * 21 20 18 23 23 C 1.38956 * 119.99924 * 180.02562 * 21 20 18 24 24 N 1.31407 * 120.00185 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99692 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47109 * 90.00232 * 25 23 21 27 27 H 1.48499 * 109.46908 * 210.00099 * 25 23 21 28 28 H 1.48495 * 109.47124 * 329.99703 * 25 23 21 29 29 C 1.45123 * 118.75828 * 185.24478 * 8 6 3 30 30 H 1.08994 * 109.47131 * 300.00522 * 1 2 3 31 31 H 1.09002 * 109.47025 * 59.99894 * 1 2 3 32 32 H 1.08998 * 109.47583 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.46874 * 239.99741 * 2 1 3 34 34 H 1.09002 * 109.46524 * 120.00276 * 2 1 3 35 35 H 1.09002 * 109.47476 * 173.48416 * 5 3 2 36 36 H 1.09002 * 109.46883 * 293.48319 * 5 3 2 37 37 H 1.09001 * 109.47145 * 53.48504 * 5 3 2 38 38 H 1.08993 * 109.16944 * 258.76838 * 9 8 6 39 39 H 1.09000 * 109.15981 * 17.97144 * 9 8 6 40 40 H 1.09001 * 109.46327 * 200.17991 * 10 9 8 41 41 H 1.08996 * 109.27741 * 80.32399 * 10 9 8 42 42 H 1.08994 * 109.59029 * 331.51062 * 11 10 9 43 43 H 1.08996 * 109.59004 * 211.07265 * 11 10 9 44 44 H 1.08991 * 109.47279 * 184.98565 * 15 13 12 45 45 H 1.09001 * 109.46794 * 304.98879 * 15 13 12 46 46 H 1.00905 * 111.00234 * 303.95867 * 16 15 13 47 47 H 1.09000 * 109.47180 * 300.00403 * 17 16 15 48 48 H 1.09003 * 109.47043 * 60.00822 * 17 16 15 49 49 H 0.96999 * 119.99335 * 0.02562 * 20 18 17 50 50 H 0.96994 * 120.00501 * 179.97438 * 24 23 21 51 51 H 1.09003 * 109.45565 * 29.31679 * 29 8 6 52 52 H 1.08997 * 109.46375 * 149.28962 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 1.6353 2.1265 1.3073 6 6 3.5420 1.4442 -0.1238 7 8 4.1846 0.4975 0.2782 8 7 4.1709 2.4977 -0.6813 9 6 3.3750 3.6807 -1.0594 10 6 4.1127 4.9790 -0.6851 11 6 4.7907 4.8126 0.6598 12 8 6.1142 4.3383 0.4492 13 6 6.3404 2.9804 0.3506 14 1 5.9674 2.4840 1.2465 15 6 7.8422 2.7223 0.2126 16 7 8.5264 3.1423 1.4428 17 6 9.9734 2.9083 1.3467 18 6 10.6396 3.3497 2.6242 19 8 9.9744 3.8133 3.5264 20 7 11.9745 3.2286 2.7649 21 6 12.5807 3.6307 3.9270 22 1 11.9886 4.0442 4.7299 23 6 13.9571 3.5062 4.0717 24 7 14.6778 3.0035 3.0946 25 14 14.7829 4.0535 5.6554 26 1 14.8297 2.9154 6.6081 27 1 16.1651 4.5096 5.3608 28 1 14.0106 5.1705 6.2560 29 6 5.6048 2.4232 -0.8923 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 2.0953 3.1133 1.3587 36 1 0.5507 2.2289 1.3431 37 1 1.9715 1.5246 2.1516 38 1 3.1967 3.6634 -2.1345 39 1 2.4182 3.6496 -0.5383 40 1 3.3981 5.8004 -0.6322 41 1 4.8626 5.1987 -1.4450 42 1 4.2362 4.0930 1.2621 43 1 4.8244 5.7733 1.1735 44 1 8.0143 1.6590 0.0461 45 1 8.2323 3.2902 -0.6320 46 1 8.3293 4.1091 1.6541 47 1 10.1599 1.8461 1.1882 48 1 10.3786 3.4772 0.5098 49 1 12.5065 2.8575 2.0436 50 1 15.6386 2.9170 3.1954 51 1 5.8950 1.3846 -1.0508 52 1 5.8742 3.0133 -1.7683 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199886030.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:36:22 Heat of formation + Delta-G solvation = -121.018739 kcal Electronic energy + Delta-G solvation = -30606.583377 eV Core-core repulsion = 26412.947441 eV Total energy + Delta-G solvation = -4193.635936 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.04951 -39.08047 -38.14161 -36.05314 -35.85333 -35.19386 -33.82631 -32.91120 -31.15562 -30.57497 -29.60400 -27.54679 -26.47753 -25.68747 -24.66982 -23.35990 -22.18854 -21.45185 -21.27748 -19.18329 -19.02632 -17.85241 -17.80025 -17.07534 -16.70728 -16.29167 -15.84583 -15.55332 -15.36452 -15.11471 -14.75569 -14.43629 -14.25903 -14.14899 -13.96752 -13.75024 -13.47272 -13.41145 -13.21837 -12.83023 -12.64973 -12.53623 -12.44241 -12.13196 -12.05529 -11.86308 -11.81503 -11.54739 -11.53388 -11.41917 -11.28859 -11.18930 -11.06985 -10.98634 -10.66196 -10.34989 -10.16219 -9.87999 -9.78258 -9.44907 -8.87553 -8.36672 -7.95475 -7.88527 -6.35843 -3.76309 2.32541 2.60719 3.22302 3.30214 3.36440 3.52019 3.98648 4.02316 4.13370 4.29136 4.31208 4.37383 4.50179 4.51788 4.71628 4.78449 4.95352 4.96817 5.00168 5.05944 5.07834 5.12159 5.17663 5.21518 5.22797 5.27516 5.32217 5.34466 5.42819 5.47014 5.55386 5.59820 5.61947 5.65310 5.70905 5.83039 5.86404 5.89739 5.94390 5.99203 6.07396 6.27155 6.34699 6.97032 7.30821 7.53597 7.60905 7.82407 7.89378 8.13075 8.68348 9.24198 9.61268 10.13367 10.82097 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.021122 B = 0.001906 C = 0.001860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.311202 B =14683.552713 C =15046.817201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.107 4.107 3 C -0.111 4.111 4 H 0.090 0.910 5 C -0.146 4.146 6 C 0.511 3.489 7 O -0.528 6.528 8 N -0.612 5.612 9 C 0.102 3.898 10 C -0.167 4.167 11 C 0.077 3.923 12 O -0.382 6.382 13 C 0.095 3.905 14 H 0.065 0.935 15 C 0.073 3.927 16 N -0.666 5.666 17 C 0.051 3.949 18 C 0.443 3.557 19 O -0.582 6.582 20 N -0.565 5.565 21 C -0.298 4.298 22 H 0.103 0.897 23 C 0.021 3.979 24 N -0.903 5.903 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.270 1.270 29 C 0.082 3.918 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.051 0.949 43 H 0.092 0.908 44 H 0.085 0.915 45 H 0.035 0.965 46 H 0.356 0.644 47 H 0.085 0.915 48 H 0.043 0.957 49 H 0.392 0.608 50 H 0.271 0.729 51 H 0.092 0.908 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.327 0.028 -14.155 31.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.145 4.145 3 C -0.132 4.132 4 H 0.109 0.891 5 C -0.203 4.203 6 C 0.299 3.701 7 O -0.403 6.403 8 N -0.346 5.346 9 C -0.020 4.020 10 C -0.205 4.205 11 C 0.001 3.999 12 O -0.301 6.301 13 C 0.035 3.965 14 H 0.083 0.917 15 C -0.057 4.057 16 N -0.299 5.299 17 C -0.082 4.082 18 C 0.228 3.772 19 O -0.466 6.466 20 N -0.202 5.202 21 C -0.427 4.427 22 H 0.120 0.880 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.757 3.243 26 H -0.204 1.204 27 H -0.210 1.210 28 H -0.195 1.195 29 C -0.042 4.042 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.105 0.895 40 H 0.105 0.895 41 H 0.100 0.900 42 H 0.069 0.931 43 H 0.110 0.890 44 H 0.104 0.896 45 H 0.053 0.947 46 H 0.177 0.823 47 H 0.104 0.896 48 H 0.061 0.939 49 H 0.225 0.775 50 H 0.081 0.919 51 H 0.111 0.889 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -28.188 -0.652 -13.035 31.063 hybrid contribution 0.863 0.598 -0.493 1.160 sum -27.325 -0.055 -13.528 30.490 Atomic orbital electron populations 1.21821 0.95283 1.02018 1.01851 1.21386 0.95618 0.94035 1.03496 1.21403 0.91805 0.99464 1.00577 0.89143 1.21838 1.02127 1.00411 0.95919 1.20859 0.90398 0.81986 0.76865 1.90731 1.67875 1.34981 1.46759 1.47930 1.08028 1.16353 1.62282 1.22139 0.94686 0.84697 1.00520 1.22568 1.01075 0.96930 0.99963 1.22124 0.83131 0.99564 0.95117 1.86260 1.28397 1.23210 1.92205 1.22028 0.95360 0.82148 0.96942 0.91713 1.21882 0.90805 1.01014 0.92019 1.60039 1.07786 1.29280 1.32822 1.21671 0.88268 1.01633 0.96642 1.19822 0.82998 0.85099 0.89268 1.90523 1.63672 1.49745 1.42646 1.41858 1.05377 1.55826 1.17169 1.19708 0.90545 1.38171 0.94311 0.87953 1.25257 0.96375 0.97446 0.98964 1.69611 1.07134 1.45446 1.32256 0.85853 0.78154 0.79019 0.81227 1.20432 1.20984 1.19462 1.22348 0.79452 1.03458 0.98965 0.92318 0.92803 0.92376 0.91729 0.90669 0.92224 0.91033 0.91486 0.91408 0.89492 0.89451 0.89992 0.93087 0.88987 0.89649 0.94691 0.82345 0.89634 0.93870 0.77467 0.91945 0.88949 0.89984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.67 37.16 0.36 -0.44 16 2 C -0.11 -0.80 4.87 -26.73 -0.13 -0.93 16 3 C -0.11 -0.79 1.85 -91.77 -0.17 -0.96 16 4 H 0.09 0.46 6.73 -51.93 -0.35 0.11 16 5 C -0.15 -0.91 8.41 37.16 0.31 -0.60 16 6 C 0.51 5.43 6.70 -10.99 -0.07 5.35 16 7 O -0.53 -7.84 15.71 5.56 0.09 -7.76 16 8 N -0.61 -5.57 2.18 -172.25 -0.38 -5.94 16 9 C 0.10 0.59 5.67 -3.00 -0.02 0.57 16 10 C -0.17 -1.03 5.79 -26.98 -0.16 -1.19 16 11 C 0.08 0.71 6.38 36.42 0.23 0.94 16 12 O -0.38 -4.79 8.98 -26.53 -0.24 -5.03 16 13 C 0.10 1.22 2.88 -25.78 -0.07 1.15 16 14 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 15 C 0.07 1.01 5.39 -3.82 -0.02 0.99 16 16 N -0.67 -12.00 6.12 -115.06 -0.70 -12.70 16 17 C 0.05 0.96 6.17 -4.98 -0.03 0.93 16 18 C 0.44 11.01 7.82 -10.99 -0.09 10.93 16 19 O -0.58 -16.61 15.78 5.54 0.09 -16.52 16 20 N -0.57 -14.89 5.29 -10.96 -0.06 -14.95 16 21 C -0.30 -8.57 9.68 -14.93 -0.14 -8.71 16 22 H 0.10 3.09 7.16 -52.49 -0.38 2.71 16 23 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 24 N -0.90 -25.14 13.05 55.50 0.72 -24.41 16 25 Si 0.93 21.58 29.55 -169.99 -5.02 16.56 16 26 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 27 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 28 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 29 C 0.08 0.85 4.82 -3.83 -0.02 0.83 16 30 H 0.06 0.28 6.71 -51.93 -0.35 -0.07 16 31 H 0.05 0.24 8.14 -51.93 -0.42 -0.19 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.69 8.02 -51.93 -0.42 0.27 16 35 H 0.06 0.35 6.93 -51.93 -0.36 -0.01 16 36 H 0.07 0.31 6.89 -51.93 -0.36 -0.04 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.09 0.37 4.73 -51.93 -0.25 0.13 16 40 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.08 0.58 8.01 -51.93 -0.42 0.16 16 42 H 0.05 0.49 7.24 -51.93 -0.38 0.12 16 43 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.36 6.81 7.99 -39.29 -0.31 6.50 16 47 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 48 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 49 H 0.39 9.84 7.90 -40.82 -0.32 9.52 16 50 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 51 H 0.09 1.05 7.35 -51.93 -0.38 0.67 16 52 H 0.08 0.73 8.11 -51.93 -0.42 0.31 16 LS Contribution 409.37 15.07 6.17 6.17 Total: -1.00 -34.88 409.37 -8.34 -43.22 By element: Atomic # 1 Polarization: 20.93 SS G_CDS: -8.89 Total: 12.04 kcal Atomic # 6 Polarization: 9.45 SS G_CDS: -0.11 Total: 9.34 kcal Atomic # 7 Polarization: -57.60 SS G_CDS: -0.41 Total: -58.01 kcal Atomic # 8 Polarization: -29.25 SS G_CDS: -0.06 Total: -29.31 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -34.88 -8.34 -43.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199886030.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.803 kcal (2) G-P(sol) polarization free energy of solvation -34.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds