Wall clock time and date at job start Wed Apr 1 2020 00:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52991 * 109.47357 * 2 1 4 4 H 1.09005 * 109.47297 * 304.99771 * 3 2 1 5 5 C 1.53000 * 109.47214 * 64.99906 * 3 2 1 6 6 C 1.50705 * 109.47302 * 184.99852 * 3 2 1 7 7 O 1.21277 * 119.99523 * 332.75981 * 6 3 2 8 8 N 1.34770 * 120.00014 * 152.75391 * 6 3 2 9 9 C 1.47510 * 118.76083 * 4.98348 * 8 6 3 10 10 C 1.53945 * 110.82275 * 138.24757 * 9 8 6 11 11 C 1.51536 * 109.72960 * 320.30730 * 10 9 8 12 12 O 1.42164 * 108.76388 * 91.29214 * 11 10 9 13 13 C 1.38015 * 119.43587 * 272.78542 * 12 11 10 14 14 H 1.09004 * 109.46788 * 303.42228 * 13 12 11 15 15 C 1.53002 * 109.46860 * 183.43122 * 13 12 11 16 16 N 1.46901 * 109.47198 * 64.98277 * 15 13 12 17 17 C 1.46895 * 111.00124 * 179.97438 * 16 15 13 18 18 C 1.50699 * 109.47248 * 180.02562 * 17 16 15 19 19 O 1.21297 * 119.99918 * 0.02562 * 18 17 16 20 20 N 1.34774 * 120.00484 * 179.97438 * 18 17 16 21 21 C 1.37096 * 120.00396 * 179.97438 * 20 18 17 22 22 H 1.07996 * 120.00091 * 0.02562 * 21 20 18 23 23 C 1.38956 * 119.99924 * 180.02562 * 21 20 18 24 24 N 1.31407 * 120.00185 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99692 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47109 * 90.00232 * 25 23 21 27 27 H 1.48499 * 109.46908 * 210.00099 * 25 23 21 28 28 H 1.48495 * 109.47124 * 329.99703 * 25 23 21 29 29 C 1.45123 * 118.75828 * 185.24478 * 8 6 3 30 30 H 1.08994 * 109.47131 * 300.00522 * 1 2 3 31 31 H 1.09002 * 109.47025 * 59.99894 * 1 2 3 32 32 H 1.08998 * 109.47583 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.46874 * 239.99741 * 2 1 3 34 34 H 1.09002 * 109.46524 * 120.00276 * 2 1 3 35 35 H 1.09002 * 109.47476 * 173.48416 * 5 3 2 36 36 H 1.09002 * 109.46883 * 293.48319 * 5 3 2 37 37 H 1.09001 * 109.47145 * 53.48504 * 5 3 2 38 38 H 1.08993 * 109.16944 * 258.76838 * 9 8 6 39 39 H 1.09000 * 109.15981 * 17.97144 * 9 8 6 40 40 H 1.09001 * 109.46327 * 200.17991 * 10 9 8 41 41 H 1.08996 * 109.27741 * 80.32399 * 10 9 8 42 42 H 1.08994 * 109.59029 * 331.51062 * 11 10 9 43 43 H 1.08996 * 109.59004 * 211.07265 * 11 10 9 44 44 H 1.08991 * 109.47279 * 184.98565 * 15 13 12 45 45 H 1.09001 * 109.46794 * 304.98879 * 15 13 12 46 46 H 1.00905 * 111.00234 * 303.95867 * 16 15 13 47 47 H 1.09000 * 109.47180 * 300.00403 * 17 16 15 48 48 H 1.09003 * 109.47043 * 60.00822 * 17 16 15 49 49 H 0.96999 * 119.99335 * 0.02562 * 20 18 17 50 50 H 0.96994 * 120.00501 * 179.97438 * 24 23 21 51 51 H 1.09003 * 109.45565 * 29.31679 * 29 8 6 52 52 H 1.08997 * 109.46375 * 149.28962 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 1.6353 2.1265 1.3073 6 6 3.5420 1.4442 -0.1238 7 8 4.1846 0.4975 0.2782 8 7 4.1709 2.4977 -0.6813 9 6 3.3750 3.6807 -1.0594 10 6 4.1127 4.9790 -0.6851 11 6 4.7907 4.8126 0.6598 12 8 6.1142 4.3383 0.4492 13 6 6.3404 2.9804 0.3506 14 1 5.9674 2.4840 1.2465 15 6 7.8422 2.7223 0.2126 16 7 8.5264 3.1423 1.4428 17 6 9.9734 2.9083 1.3467 18 6 10.6396 3.3497 2.6242 19 8 9.9744 3.8133 3.5264 20 7 11.9745 3.2286 2.7649 21 6 12.5807 3.6307 3.9270 22 1 11.9886 4.0442 4.7299 23 6 13.9571 3.5062 4.0717 24 7 14.6778 3.0035 3.0946 25 14 14.7829 4.0535 5.6554 26 1 14.8297 2.9154 6.6081 27 1 16.1651 4.5096 5.3608 28 1 14.0106 5.1705 6.2560 29 6 5.6048 2.4232 -0.8923 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 2.0953 3.1133 1.3587 36 1 0.5507 2.2289 1.3431 37 1 1.9715 1.5246 2.1516 38 1 3.1967 3.6634 -2.1345 39 1 2.4182 3.6496 -0.5383 40 1 3.3981 5.8004 -0.6322 41 1 4.8626 5.1987 -1.4450 42 1 4.2362 4.0930 1.2621 43 1 4.8244 5.7733 1.1735 44 1 8.0143 1.6590 0.0461 45 1 8.2323 3.2902 -0.6320 46 1 8.3293 4.1091 1.6541 47 1 10.1599 1.8461 1.1882 48 1 10.3786 3.4772 0.5098 49 1 12.5065 2.8575 2.0436 50 1 15.6386 2.9170 3.1954 51 1 5.8950 1.3846 -1.0508 52 1 5.8742 3.0133 -1.7683 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199886030.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:36:21 Heat of formation + Delta-G solvation = -146.734115 kcal Electronic energy + Delta-G solvation = -30607.698479 eV Core-core repulsion = 26412.947441 eV Total energy + Delta-G solvation = -4194.751038 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.83773 -40.24121 -39.83561 -37.07702 -36.49415 -36.35822 -35.83398 -33.84595 -33.25920 -31.23973 -30.50102 -28.69357 -27.50264 -26.63724 -25.94213 -24.65012 -23.03406 -22.28865 -21.96480 -21.10589 -19.93292 -19.72150 -18.55579 -18.16783 -17.78746 -17.38928 -17.05052 -16.74455 -16.39571 -16.25484 -15.97308 -15.89612 -15.56351 -15.12773 -14.96157 -14.84590 -14.64450 -14.40584 -14.24035 -13.91547 -13.53509 -13.49649 -13.27150 -13.15808 -13.06992 -13.04178 -12.78930 -12.71677 -12.64754 -12.59595 -12.43087 -12.28177 -12.12275 -12.05634 -11.72883 -11.65368 -11.52670 -11.49190 -10.69410 -10.61015 -10.38184 -10.03322 -9.66514 -9.35891 -8.47698 -5.96804 1.37361 1.40722 1.53052 1.54131 1.91351 2.02895 2.28566 2.65240 2.88550 3.19055 3.40758 3.47503 3.76465 3.78131 3.89942 3.95224 3.97019 4.05288 4.15767 4.24654 4.29850 4.31692 4.41554 4.43616 4.46959 4.49208 4.53199 4.57635 4.63457 4.67366 4.70648 4.72180 4.79405 4.90901 4.95256 4.96987 5.09705 5.10293 5.17401 5.17723 5.34548 5.39568 5.44746 5.54748 5.85521 6.07421 6.25761 6.36353 6.58787 6.64512 7.10921 7.11670 7.53928 8.09681 8.69767 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.021122 B = 0.001906 C = 0.001860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.311202 B =14683.552713 C =15046.817201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.107 4.107 3 C -0.104 4.104 4 H 0.123 0.877 5 C -0.143 4.143 6 C 0.502 3.498 7 O -0.583 6.583 8 N -0.610 5.610 9 C 0.096 3.904 10 C -0.157 4.157 11 C 0.067 3.933 12 O -0.400 6.400 13 C 0.106 3.894 14 H 0.025 0.975 15 C 0.074 3.926 16 N -0.685 5.685 17 C 0.065 3.935 18 C 0.437 3.563 19 O -0.625 6.625 20 N -0.572 5.572 21 C -0.336 4.336 22 H 0.078 0.922 23 C -0.013 4.013 24 N -0.919 5.919 25 Si 0.995 3.005 26 H -0.271 1.271 27 H -0.268 1.268 28 H -0.273 1.273 29 C 0.089 3.911 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.056 0.944 33 H 0.053 0.947 34 H 0.047 0.953 35 H 0.064 0.936 36 H 0.098 0.902 37 H 0.041 0.959 38 H 0.092 0.908 39 H 0.107 0.893 40 H 0.118 0.882 41 H 0.078 0.922 42 H 0.041 0.959 43 H 0.098 0.902 44 H 0.091 0.909 45 H 0.055 0.945 46 H 0.348 0.652 47 H 0.104 0.896 48 H 0.070 0.930 49 H 0.397 0.603 50 H 0.278 0.722 51 H 0.078 0.922 52 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.811 1.257 -15.946 33.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.146 4.146 3 C -0.125 4.125 4 H 0.141 0.859 5 C -0.200 4.200 6 C 0.292 3.708 7 O -0.462 6.462 8 N -0.342 5.342 9 C -0.025 4.025 10 C -0.195 4.195 11 C -0.009 4.009 12 O -0.320 6.320 13 C 0.046 3.954 14 H 0.043 0.957 15 C -0.055 4.055 16 N -0.317 5.317 17 C -0.067 4.067 18 C 0.224 3.776 19 O -0.511 6.511 20 N -0.209 5.209 21 C -0.466 4.466 22 H 0.096 0.904 23 C -0.213 4.213 24 N -0.560 5.560 25 Si 0.819 3.181 26 H -0.197 1.197 27 H -0.193 1.193 28 H -0.198 1.198 29 C -0.035 4.035 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.083 0.917 36 H 0.116 0.884 37 H 0.061 0.939 38 H 0.110 0.890 39 H 0.125 0.875 40 H 0.136 0.864 41 H 0.096 0.904 42 H 0.059 0.941 43 H 0.116 0.884 44 H 0.109 0.891 45 H 0.073 0.927 46 H 0.166 0.834 47 H 0.122 0.878 48 H 0.088 0.912 49 H 0.231 0.769 50 H 0.088 0.912 51 H 0.096 0.904 52 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -29.687 0.589 -14.879 33.213 hybrid contribution 1.301 0.241 0.065 1.325 sum -28.386 0.830 -14.815 32.030 Atomic orbital electron populations 1.21786 0.93079 1.02459 1.03035 1.21361 0.97426 0.94079 1.01694 1.21458 0.89136 0.99672 1.02234 0.85881 1.21848 1.03799 0.99970 0.94419 1.21595 0.91898 0.81467 0.75856 1.90703 1.69227 1.37156 1.49137 1.48075 1.07634 1.17134 1.61363 1.22459 0.94788 0.82920 1.02307 1.22496 1.01380 0.98125 0.97476 1.22382 0.81937 0.99308 0.97258 1.86221 1.30618 1.22679 1.92437 1.21769 0.94768 0.82324 0.96537 0.95668 1.21967 0.91215 1.01513 0.90818 1.60026 1.07349 1.28765 1.35587 1.21543 0.88571 1.02804 0.93801 1.20858 0.82444 0.83576 0.90691 1.90487 1.64465 1.51393 1.44783 1.41914 1.06084 1.56095 1.16787 1.19678 0.91386 1.40409 0.95083 0.90421 1.26074 0.96258 0.96769 1.02209 1.69669 1.07715 1.45068 1.33566 0.84898 0.77455 0.78549 0.77233 1.19693 1.19277 1.19783 1.22172 0.80343 1.02740 0.98281 0.91505 0.91104 0.92444 0.92811 0.93373 0.91665 0.88363 0.93928 0.88962 0.87465 0.86368 0.90373 0.94085 0.88364 0.89088 0.92713 0.83360 0.87808 0.91234 0.76895 0.91228 0.90369 0.87794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.67 71.98 0.70 -0.56 16 2 C -0.11 -1.58 4.87 30.59 0.15 -1.43 16 3 C -0.10 -1.34 1.85 -11.54 -0.02 -1.36 16 4 H 0.12 0.79 6.73 -2.38 -0.02 0.77 16 5 C -0.14 -1.58 8.41 71.98 0.61 -0.98 16 6 C 0.50 10.68 6.70 87.66 0.59 11.26 16 7 O -0.58 -18.44 15.71 -3.02 -0.05 -18.48 16 8 N -0.61 -10.40 2.18 -817.26 -1.78 -12.18 16 9 C 0.10 0.80 5.67 86.51 0.49 1.29 16 10 C -0.16 -1.46 5.79 30.43 0.18 -1.29 16 11 C 0.07 1.16 6.38 71.50 0.46 1.62 16 12 O -0.40 -9.98 8.98 -117.86 -1.06 -11.04 16 13 C 0.11 2.78 2.88 31.21 0.09 2.87 16 14 H 0.03 0.85 8.14 -2.38 -0.02 0.83 16 15 C 0.07 2.04 5.39 86.30 0.46 2.51 16 16 N -0.68 -25.01 6.12 -517.94 -3.17 -28.18 16 17 C 0.07 2.45 6.17 85.56 0.53 2.98 16 18 C 0.44 22.24 7.82 87.66 0.69 22.92 16 19 O -0.62 -37.01 15.78 -3.08 -0.05 -37.06 16 20 N -0.57 -30.75 5.29 -306.98 -1.62 -32.37 16 21 C -0.34 -19.83 9.68 84.04 0.81 -19.01 16 22 H 0.08 4.89 7.16 -2.91 -0.02 4.87 16 23 C -0.01 -0.73 5.50 84.93 0.47 -0.27 16 24 N -0.92 -50.78 13.05 21.66 0.28 -50.50 16 25 Si 1.00 44.11 29.55 68.60 2.03 46.14 16 26 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 27 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 28 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 29 C 0.09 1.81 4.82 87.25 0.42 2.23 16 30 H 0.07 0.47 6.71 -2.39 -0.02 0.46 16 31 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 34 H 0.05 0.95 8.02 -2.39 -0.02 0.93 16 35 H 0.06 0.65 6.93 -2.39 -0.02 0.63 16 36 H 0.10 0.57 6.89 -2.39 -0.02 0.56 16 37 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 39 H 0.11 0.48 4.73 -2.39 -0.01 0.46 16 40 H 0.12 0.44 8.14 -2.39 -0.02 0.42 16 41 H 0.08 0.85 8.01 -2.39 -0.02 0.83 16 42 H 0.04 0.79 7.24 -2.39 -0.02 0.77 16 43 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 45 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 46 H 0.35 13.64 7.99 -89.69 -0.72 12.92 16 47 H 0.10 3.54 8.14 -2.39 -0.02 3.52 16 48 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 49 H 0.40 20.16 7.90 -92.71 -0.73 19.42 16 50 H 0.28 14.33 8.31 -92.71 -0.77 13.56 16 51 H 0.08 1.82 7.35 -2.39 -0.02 1.81 16 52 H 0.10 1.65 8.11 -2.39 -0.02 1.63 16 Total: -1.00 -79.82 409.37 0.67 -79.15 By element: Atomic # 1 Polarization: 42.27 SS G_CDS: -0.52 Total: 41.75 kcal Atomic # 6 Polarization: 16.17 SS G_CDS: 6.61 Total: 22.78 kcal Atomic # 7 Polarization: -116.94 SS G_CDS: -6.29 Total: -123.23 kcal Atomic # 8 Polarization: -65.43 SS G_CDS: -1.15 Total: -66.58 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -79.82 0.67 -79.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199886030.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.581 kcal (2) G-P(sol) polarization free energy of solvation -79.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds