Wall clock time and date at job start Wed Apr 1 2020 00:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52994 * 109.47332 * 2 1 4 4 H 1.09002 * 109.47574 * 305.00648 * 3 2 1 5 5 C 1.53007 * 109.46910 * 65.00436 * 3 2 1 6 6 C 1.50696 * 109.47530 * 184.99983 * 3 2 1 7 7 O 1.21284 * 119.99783 * 0.02562 * 6 3 2 8 8 N 1.34776 * 120.00407 * 180.02562 * 6 3 2 9 9 C 1.47503 * 118.75472 * 359.73420 * 8 6 3 10 10 C 1.53580 * 111.02517 * 221.91079 * 9 8 6 11 11 C 1.51533 * 109.58138 * 39.97969 * 10 9 8 12 12 O 1.42159 * 108.76227 * 268.60454 * 11 10 9 13 13 C 1.38012 * 119.43626 * 87.21796 * 12 11 10 14 14 H 1.08996 * 109.47519 * 56.57691 * 13 12 11 15 15 C 1.53007 * 109.46380 * 176.57251 * 13 12 11 16 16 N 1.46905 * 109.46851 * 300.00471 * 15 13 12 17 17 C 1.46896 * 110.99841 * 180.02562 * 16 15 13 18 18 C 1.50700 * 109.47184 * 180.02562 * 17 16 15 19 19 O 1.21292 * 119.99880 * 0.02562 * 18 17 16 20 20 N 1.34776 * 120.00061 * 180.02562 * 18 17 16 21 21 C 1.37094 * 119.99871 * 180.02562 * 20 18 17 22 22 H 1.07994 * 120.00247 * 359.97438 * 21 20 18 23 23 C 1.38950 * 120.00168 * 180.02562 * 21 20 18 24 24 N 1.31417 * 119.99541 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00241 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47260 * 59.99684 * 25 23 21 27 27 H 1.48507 * 109.46868 * 179.97438 * 25 23 21 28 28 H 1.48494 * 109.46904 * 299.99023 * 25 23 21 29 29 C 1.45126 * 118.75873 * 180.02562 * 8 6 3 30 30 H 1.09000 * 109.47063 * 299.99620 * 1 2 3 31 31 H 1.09000 * 109.47539 * 59.99456 * 1 2 3 32 32 H 1.09000 * 109.47547 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47063 * 240.00380 * 2 1 3 34 34 H 1.09000 * 109.47539 * 120.00544 * 2 1 3 35 35 H 1.08994 * 109.47430 * 59.99650 * 5 3 2 36 36 H 1.08997 * 109.47058 * 180.02562 * 5 3 2 37 37 H 1.08999 * 109.46976 * 299.99767 * 5 3 2 38 38 H 1.09003 * 109.17000 * 342.30841 * 9 8 6 39 39 H 1.08998 * 109.17054 * 101.51267 * 9 8 6 40 40 H 1.09001 * 109.45592 * 279.94004 * 10 9 8 41 41 H 1.09007 * 109.45012 * 160.01140 * 10 9 8 42 42 H 1.08998 * 109.59144 * 148.81979 * 11 10 9 43 43 H 1.09000 * 109.59362 * 28.38379 * 11 10 9 44 44 H 1.08997 * 109.47515 * 60.00820 * 15 13 12 45 45 H 1.09007 * 109.46799 * 180.02562 * 15 13 12 46 46 H 1.00897 * 110.99555 * 56.05412 * 16 15 13 47 47 H 1.09002 * 109.47382 * 300.00619 * 17 16 15 48 48 H 1.08998 * 109.47208 * 60.00469 * 17 16 15 49 49 H 0.97000 * 120.00138 * 0.02562 * 20 18 17 50 50 H 0.97007 * 119.99479 * 180.02562 * 24 23 21 51 51 H 1.09002 * 109.46065 * 210.44579 * 29 8 6 52 52 H 1.09000 * 109.45925 * 330.40850 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 1.6353 2.1264 1.3075 6 6 3.5418 1.4443 -0.1238 7 8 4.1449 0.3951 -0.2046 8 7 4.2149 2.6117 -0.1448 9 6 3.4535 3.8716 -0.0507 10 6 4.0041 4.9223 -1.0261 11 6 4.3660 4.2568 -2.3384 12 8 5.7296 3.8580 -2.2882 13 6 6.0568 2.6253 -1.7609 14 1 5.5208 1.8450 -2.3013 15 6 7.5635 2.3964 -1.8964 16 7 7.9393 2.4374 -3.3160 17 6 9.3823 2.2204 -3.4850 18 6 9.7294 2.2699 -4.9506 19 8 8.8603 2.4670 -5.7734 20 7 11.0056 2.0951 -5.3472 21 6 11.3214 2.1406 -6.6805 22 1 10.5476 2.3161 -7.4130 23 6 12.6371 1.9598 -7.0894 24 7 13.5786 1.7458 -6.1980 25 14 13.0673 2.0211 -8.9061 26 1 12.6997 3.3501 -9.4574 27 1 14.5260 1.8012 -9.0770 28 1 12.3186 0.9613 -9.6281 29 6 5.6608 2.5820 -0.2655 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 2.0698 1.5874 2.1492 36 1 1.9982 3.1542 1.3073 37 1 0.5490 2.1252 1.3971 38 1 2.4077 3.6763 -0.2879 39 1 3.5229 4.2566 0.9667 40 1 4.8925 5.3858 -0.5970 41 1 3.2464 5.6857 -1.2030 42 1 4.2212 4.9611 -3.1576 43 1 3.7347 3.3813 -2.4906 44 1 8.0996 3.1765 -1.3559 45 1 7.8220 1.4226 -1.4803 46 1 7.6518 3.3061 -3.7411 47 1 9.9313 2.9990 -2.9554 48 1 9.6530 1.2454 -3.0799 49 1 11.7006 1.9371 -4.6892 50 1 14.4972 1.6199 -6.4834 51 1 6.0859 3.4446 0.2478 52 1 6.0441 1.6664 0.1849 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199886031.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:36:28 Heat of formation + Delta-G solvation = -114.885479 kcal Electronic energy + Delta-G solvation = -30582.994245 eV Core-core repulsion = 26389.624267 eV Total energy + Delta-G solvation = -4193.369978 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.10552 -39.09700 -38.14075 -36.18602 -35.80203 -35.20797 -33.82763 -32.92383 -31.15518 -30.69108 -29.55518 -27.33510 -26.63721 -25.72426 -24.65460 -23.36314 -22.21848 -21.45056 -21.15796 -19.28377 -19.16433 -17.83065 -17.67116 -17.06245 -16.71597 -16.42431 -15.94981 -15.55570 -15.30107 -14.94214 -14.88345 -14.43313 -14.29381 -14.18119 -14.00000 -13.74105 -13.48806 -13.35683 -13.19525 -13.00008 -12.65927 -12.53205 -12.35483 -12.10958 -11.95910 -11.82906 -11.78817 -11.55203 -11.50855 -11.41293 -11.27236 -11.19007 -11.04042 -10.96703 -10.66205 -10.39794 -10.15719 -9.91217 -9.77639 -9.44007 -8.88308 -8.36619 -7.95268 -7.88446 -6.35755 -3.76277 2.33192 2.59995 3.24569 3.29428 3.34298 3.51950 3.98673 4.01633 4.13101 4.26925 4.31872 4.38675 4.45535 4.53031 4.70287 4.77433 4.92504 4.98153 4.99279 5.07102 5.08561 5.12775 5.15699 5.21415 5.22496 5.26290 5.32100 5.34167 5.42264 5.47253 5.53743 5.55848 5.61362 5.70168 5.71806 5.83799 5.85059 5.89256 5.97079 6.00064 6.07347 6.25861 6.34605 6.96362 7.30433 7.53745 7.60726 7.83648 7.88581 8.12868 8.68389 9.24097 9.61235 10.13383 10.82073 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.021814 B = 0.001887 C = 0.001841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.263432 B =14831.476183 C =15204.007161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.106 4.106 3 C -0.111 4.111 4 H 0.096 0.904 5 C -0.158 4.158 6 C 0.511 3.489 7 O -0.530 6.530 8 N -0.610 5.610 9 C 0.102 3.898 10 C -0.170 4.170 11 C 0.078 3.922 12 O -0.381 6.381 13 C 0.096 3.904 14 H 0.063 0.937 15 C 0.073 3.927 16 N -0.665 5.665 17 C 0.050 3.950 18 C 0.443 3.557 19 O -0.582 6.582 20 N -0.565 5.565 21 C -0.298 4.298 22 H 0.102 0.898 23 C 0.021 3.979 24 N -0.903 5.903 25 Si 0.931 3.069 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.274 1.274 29 C 0.080 3.920 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.060 0.940 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.090 0.910 39 H 0.070 0.930 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.092 0.908 43 H 0.050 0.950 44 H 0.034 0.966 45 H 0.085 0.915 46 H 0.357 0.643 47 H 0.043 0.957 48 H 0.085 0.915 49 H 0.392 0.608 50 H 0.271 0.729 51 H 0.082 0.918 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.404 4.946 19.535 31.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.144 4.144 3 C -0.132 4.132 4 H 0.114 0.886 5 C -0.216 4.216 6 C 0.299 3.701 7 O -0.406 6.406 8 N -0.344 5.344 9 C -0.020 4.020 10 C -0.208 4.208 11 C 0.001 3.999 12 O -0.300 6.300 13 C 0.036 3.964 14 H 0.081 0.919 15 C -0.057 4.057 16 N -0.299 5.299 17 C -0.082 4.082 18 C 0.228 3.772 19 O -0.466 6.466 20 N -0.202 5.202 21 C -0.428 4.428 22 H 0.120 0.880 23 C -0.180 4.180 24 N -0.545 5.545 25 Si 0.758 3.242 26 H -0.200 1.200 27 H -0.210 1.210 28 H -0.199 1.199 29 C -0.044 4.044 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.108 0.892 39 H 0.088 0.912 40 H 0.100 0.900 41 H 0.106 0.894 42 H 0.110 0.890 43 H 0.068 0.932 44 H 0.052 0.948 45 H 0.103 0.897 46 H 0.178 0.822 47 H 0.061 0.939 48 H 0.104 0.896 49 H 0.225 0.775 50 H 0.081 0.919 51 H 0.100 0.900 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -24.467 3.954 18.740 31.072 hybrid contribution 0.892 0.695 0.031 1.132 sum -23.575 4.649 18.771 30.492 Atomic orbital electron populations 1.21839 0.95402 1.02028 1.01779 1.21345 0.95393 0.93993 1.03659 1.21356 0.91858 0.99602 1.00432 0.88603 1.22139 1.02495 1.01031 0.95896 1.20858 0.90196 0.83352 0.75707 1.90727 1.70159 1.31019 1.48666 1.47896 1.06955 1.06181 1.73362 1.22242 0.95973 0.84089 0.99717 1.22553 1.02875 0.98394 0.96985 1.22117 0.82786 0.98544 0.96437 1.86256 1.25802 1.35701 1.82200 1.22017 0.96264 0.86170 0.91941 0.91944 1.21892 0.92025 1.01086 0.90718 1.60027 1.14340 1.43471 1.12046 1.21674 0.88673 1.01495 0.96390 1.19820 0.83558 0.84363 0.89460 1.90521 1.47706 1.54256 1.54112 1.41851 1.06812 1.62934 1.08608 1.19655 0.93808 1.45957 0.83373 0.88009 1.25259 0.95347 0.97362 1.00068 1.69614 1.01587 1.49225 1.34031 0.85913 0.77075 0.78976 0.82206 1.19963 1.21021 1.19914 1.22352 0.79842 1.04020 0.98147 0.92498 0.92688 0.92370 0.90982 0.91308 0.92054 0.91182 0.91117 0.89223 0.91221 0.89970 0.89424 0.88952 0.93187 0.94758 0.89658 0.82238 0.93891 0.89646 0.77462 0.91895 0.89969 0.88814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.67 37.15 0.36 -0.49 16 2 C -0.11 -0.83 4.75 -26.74 -0.13 -0.95 16 3 C -0.11 -0.79 1.90 -91.77 -0.17 -0.96 16 4 H 0.10 0.56 7.40 -51.93 -0.38 0.17 16 5 C -0.16 -0.77 8.46 37.16 0.31 -0.46 16 6 C 0.51 5.38 7.04 -10.99 -0.08 5.30 16 7 O -0.53 -7.79 15.35 5.55 0.09 -7.70 16 8 N -0.61 -5.47 2.19 -172.50 -0.38 -5.84 16 9 C 0.10 0.58 4.47 -3.19 -0.01 0.56 16 10 C -0.17 -1.04 5.78 -27.17 -0.16 -1.20 16 11 C 0.08 0.71 6.37 36.42 0.23 0.95 16 12 O -0.38 -4.78 8.80 -26.52 -0.23 -5.02 16 13 C 0.10 1.22 2.91 -25.80 -0.08 1.15 16 14 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 15 C 0.07 1.01 5.42 -3.82 -0.02 0.99 16 16 N -0.67 -11.95 6.13 -115.05 -0.70 -12.65 16 17 C 0.05 0.95 6.17 -4.98 -0.03 0.92 16 18 C 0.44 11.00 7.82 -10.99 -0.09 10.91 16 19 O -0.58 -16.58 15.78 5.55 0.09 -16.50 16 20 N -0.57 -14.87 5.29 -10.97 -0.06 -14.93 16 21 C -0.30 -8.58 9.68 -14.93 -0.14 -8.72 16 22 H 0.10 3.06 7.16 -52.49 -0.38 2.68 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 24 N -0.90 -25.13 13.05 55.50 0.72 -24.40 16 25 Si 0.93 21.57 29.55 -169.99 -5.02 16.54 16 26 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 27 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 28 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 29 C 0.08 0.83 4.86 -3.86 -0.02 0.81 16 30 H 0.06 0.26 6.56 -51.93 -0.34 -0.08 16 31 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.69 7.95 -51.93 -0.41 0.28 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.07 0.26 4.62 -51.93 -0.24 0.02 16 37 H 0.07 0.25 6.57 -51.93 -0.34 -0.09 16 38 H 0.09 0.36 4.95 -51.93 -0.26 0.11 16 39 H 0.07 0.31 7.56 -51.93 -0.39 -0.08 16 40 H 0.08 0.58 8.01 -51.93 -0.42 0.16 16 41 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 42 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.05 0.48 7.40 -51.93 -0.38 0.10 16 44 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.09 1.12 8.14 -51.92 -0.42 0.70 16 46 H 0.36 6.82 7.82 -39.29 -0.31 6.51 16 47 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 49 H 0.39 9.83 7.90 -40.82 -0.32 9.51 16 50 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 51 H 0.08 0.74 8.11 -51.93 -0.42 0.31 16 52 H 0.09 1.06 7.28 -51.93 -0.38 0.69 16 LS Contribution 405.43 15.07 6.11 6.11 Total: -1.00 -34.81 405.43 -8.27 -43.08 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: -8.76 Total: 12.04 kcal Atomic # 6 Polarization: 9.40 SS G_CDS: -0.12 Total: 9.28 kcal Atomic # 7 Polarization: -57.41 SS G_CDS: -0.42 Total: -57.83 kcal Atomic # 8 Polarization: -29.16 SS G_CDS: -0.06 Total: -29.22 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.81 -8.27 -43.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199886031.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.809 kcal (2) G-P(sol) polarization free energy of solvation -34.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds