Wall clock time and date at job start Wed Apr 1 2020 00:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52994 * 109.47332 * 2 1 4 4 H 1.09002 * 109.47574 * 305.00648 * 3 2 1 5 5 C 1.53007 * 109.46910 * 65.00436 * 3 2 1 6 6 C 1.50696 * 109.47530 * 184.99983 * 3 2 1 7 7 O 1.21284 * 119.99783 * 0.02562 * 6 3 2 8 8 N 1.34776 * 120.00407 * 180.02562 * 6 3 2 9 9 C 1.47503 * 118.75472 * 359.73420 * 8 6 3 10 10 C 1.53580 * 111.02517 * 221.91079 * 9 8 6 11 11 C 1.51533 * 109.58138 * 39.97969 * 10 9 8 12 12 O 1.42159 * 108.76227 * 268.60454 * 11 10 9 13 13 C 1.38012 * 119.43626 * 87.21796 * 12 11 10 14 14 H 1.08996 * 109.47519 * 56.57691 * 13 12 11 15 15 C 1.53007 * 109.46380 * 176.57251 * 13 12 11 16 16 N 1.46905 * 109.46851 * 300.00471 * 15 13 12 17 17 C 1.46896 * 110.99841 * 180.02562 * 16 15 13 18 18 C 1.50700 * 109.47184 * 180.02562 * 17 16 15 19 19 O 1.21292 * 119.99880 * 0.02562 * 18 17 16 20 20 N 1.34776 * 120.00061 * 180.02562 * 18 17 16 21 21 C 1.37094 * 119.99871 * 180.02562 * 20 18 17 22 22 H 1.07994 * 120.00247 * 359.97438 * 21 20 18 23 23 C 1.38950 * 120.00168 * 180.02562 * 21 20 18 24 24 N 1.31417 * 119.99541 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00241 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47260 * 59.99684 * 25 23 21 27 27 H 1.48507 * 109.46868 * 179.97438 * 25 23 21 28 28 H 1.48494 * 109.46904 * 299.99023 * 25 23 21 29 29 C 1.45126 * 118.75873 * 180.02562 * 8 6 3 30 30 H 1.09000 * 109.47063 * 299.99620 * 1 2 3 31 31 H 1.09000 * 109.47539 * 59.99456 * 1 2 3 32 32 H 1.09000 * 109.47547 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47063 * 240.00380 * 2 1 3 34 34 H 1.09000 * 109.47539 * 120.00544 * 2 1 3 35 35 H 1.08994 * 109.47430 * 59.99650 * 5 3 2 36 36 H 1.08997 * 109.47058 * 180.02562 * 5 3 2 37 37 H 1.08999 * 109.46976 * 299.99767 * 5 3 2 38 38 H 1.09003 * 109.17000 * 342.30841 * 9 8 6 39 39 H 1.08998 * 109.17054 * 101.51267 * 9 8 6 40 40 H 1.09001 * 109.45592 * 279.94004 * 10 9 8 41 41 H 1.09007 * 109.45012 * 160.01140 * 10 9 8 42 42 H 1.08998 * 109.59144 * 148.81979 * 11 10 9 43 43 H 1.09000 * 109.59362 * 28.38379 * 11 10 9 44 44 H 1.08997 * 109.47515 * 60.00820 * 15 13 12 45 45 H 1.09007 * 109.46799 * 180.02562 * 15 13 12 46 46 H 1.00897 * 110.99555 * 56.05412 * 16 15 13 47 47 H 1.09002 * 109.47382 * 300.00619 * 17 16 15 48 48 H 1.08998 * 109.47208 * 60.00469 * 17 16 15 49 49 H 0.97000 * 120.00138 * 0.02562 * 20 18 17 50 50 H 0.97007 * 119.99479 * 180.02562 * 24 23 21 51 51 H 1.09002 * 109.46065 * 210.44579 * 29 8 6 52 52 H 1.09000 * 109.45925 * 330.40850 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 1.6353 2.1264 1.3075 6 6 3.5418 1.4443 -0.1238 7 8 4.1449 0.3951 -0.2046 8 7 4.2149 2.6117 -0.1448 9 6 3.4535 3.8716 -0.0507 10 6 4.0041 4.9223 -1.0261 11 6 4.3660 4.2568 -2.3384 12 8 5.7296 3.8580 -2.2882 13 6 6.0568 2.6253 -1.7609 14 1 5.5208 1.8450 -2.3013 15 6 7.5635 2.3964 -1.8964 16 7 7.9393 2.4374 -3.3160 17 6 9.3823 2.2204 -3.4850 18 6 9.7294 2.2699 -4.9506 19 8 8.8603 2.4670 -5.7734 20 7 11.0056 2.0951 -5.3472 21 6 11.3214 2.1406 -6.6805 22 1 10.5476 2.3161 -7.4130 23 6 12.6371 1.9598 -7.0894 24 7 13.5786 1.7458 -6.1980 25 14 13.0673 2.0211 -8.9061 26 1 12.6997 3.3501 -9.4574 27 1 14.5260 1.8012 -9.0770 28 1 12.3186 0.9613 -9.6281 29 6 5.6608 2.5820 -0.2655 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 2.0698 1.5874 2.1492 36 1 1.9982 3.1542 1.3073 37 1 0.5490 2.1252 1.3971 38 1 2.4077 3.6763 -0.2879 39 1 3.5229 4.2566 0.9667 40 1 4.8925 5.3858 -0.5970 41 1 3.2464 5.6857 -1.2030 42 1 4.2212 4.9611 -3.1576 43 1 3.7347 3.3813 -2.4906 44 1 8.0996 3.1765 -1.3559 45 1 7.8220 1.4226 -1.4803 46 1 7.6518 3.3061 -3.7411 47 1 9.9313 2.9990 -2.9554 48 1 9.6530 1.2454 -3.0799 49 1 11.7006 1.9371 -4.6892 50 1 14.4972 1.6199 -6.4834 51 1 6.0859 3.4446 0.2478 52 1 6.0441 1.6664 0.1849 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199886031.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:36:27 Heat of formation + Delta-G solvation = -140.627104 kcal Electronic energy + Delta-G solvation = -30584.110485 eV Core-core repulsion = 26389.624267 eV Total energy + Delta-G solvation = -4194.486218 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.87884 -40.24380 -39.83993 -37.13339 -36.54130 -36.32491 -35.83195 -33.85554 -33.25530 -31.33943 -30.47608 -28.53388 -27.46794 -26.75425 -25.90387 -24.64866 -23.05259 -22.28489 -21.84802 -21.09766 -19.96586 -19.91847 -18.40002 -18.16190 -17.75879 -17.38197 -17.17181 -16.85003 -16.40310 -16.23570 -15.89672 -15.84317 -15.57196 -15.10407 -15.00113 -14.84260 -14.71769 -14.37893 -14.18676 -13.87534 -13.60728 -13.48908 -13.39937 -13.15863 -13.03975 -12.88372 -12.78402 -12.69997 -12.59927 -12.44373 -12.41381 -12.31523 -12.12395 -11.98281 -11.72243 -11.62256 -11.51833 -11.48865 -10.71299 -10.59441 -10.37689 -10.03123 -9.66657 -9.35039 -8.47274 -5.96441 1.39425 1.40855 1.52344 1.54823 1.91348 2.03333 2.28833 2.65410 2.89146 3.19437 3.40929 3.47824 3.75974 3.80475 3.90754 3.94498 3.96662 4.04145 4.15804 4.24600 4.30169 4.31448 4.41398 4.44650 4.47498 4.50292 4.53532 4.58830 4.63792 4.70002 4.71803 4.74732 4.78105 4.94223 4.95217 5.02089 5.09987 5.11647 5.16884 5.20362 5.36092 5.39601 5.46515 5.53970 5.85710 6.07558 6.25851 6.37974 6.59108 6.65284 7.11094 7.11496 7.54257 8.09965 8.69911 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.021814 B = 0.001887 C = 0.001841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.263432 B =14831.476183 C =15204.007161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.107 4.107 3 C -0.106 4.106 4 H 0.115 0.885 5 C -0.153 4.153 6 C 0.502 3.498 7 O -0.584 6.584 8 N -0.608 5.608 9 C 0.096 3.904 10 C -0.159 4.159 11 C 0.067 3.933 12 O -0.400 6.400 13 C 0.107 3.893 14 H 0.025 0.975 15 C 0.074 3.926 16 N -0.684 5.684 17 C 0.065 3.935 18 C 0.437 3.563 19 O -0.624 6.624 20 N -0.572 5.572 21 C -0.337 4.337 22 H 0.078 0.922 23 C -0.014 4.014 24 N -0.920 5.920 25 Si 0.995 3.005 26 H -0.271 1.271 27 H -0.269 1.269 28 H -0.273 1.273 29 C 0.088 3.912 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.043 0.957 34 H 0.053 0.947 35 H 0.049 0.951 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.111 0.889 39 H 0.094 0.906 40 H 0.077 0.923 41 H 0.118 0.882 42 H 0.098 0.902 43 H 0.041 0.959 44 H 0.054 0.946 45 H 0.090 0.910 46 H 0.349 0.651 47 H 0.069 0.931 48 H 0.104 0.896 49 H 0.397 0.603 50 H 0.278 0.722 51 H 0.103 0.897 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.563 6.759 20.960 33.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.145 4.145 3 C -0.127 4.127 4 H 0.133 0.867 5 C -0.210 4.210 6 C 0.291 3.709 7 O -0.464 6.464 8 N -0.340 5.340 9 C -0.025 4.025 10 C -0.197 4.197 11 C -0.008 4.008 12 O -0.319 6.319 13 C 0.047 3.953 14 H 0.043 0.957 15 C -0.055 4.055 16 N -0.317 5.317 17 C -0.068 4.068 18 C 0.224 3.776 19 O -0.511 6.511 20 N -0.209 5.209 21 C -0.466 4.466 22 H 0.096 0.904 23 C -0.213 4.213 24 N -0.560 5.560 25 Si 0.819 3.181 26 H -0.196 1.196 27 H -0.193 1.193 28 H -0.198 1.198 29 C -0.036 4.036 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.106 0.894 37 H 0.109 0.891 38 H 0.129 0.871 39 H 0.112 0.888 40 H 0.096 0.904 41 H 0.137 0.863 42 H 0.116 0.884 43 H 0.059 0.941 44 H 0.073 0.927 45 H 0.108 0.892 46 H 0.168 0.832 47 H 0.087 0.913 48 H 0.122 0.878 49 H 0.231 0.769 50 H 0.088 0.912 51 H 0.121 0.879 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -25.633 5.798 20.210 33.153 hybrid contribution 1.226 0.147 -0.419 1.304 sum -24.407 5.945 19.790 31.980 Atomic orbital electron populations 1.21803 0.93239 1.02385 1.02984 1.21317 0.97181 0.94380 1.01591 1.21404 0.89162 0.99500 1.02613 0.86740 1.22142 1.03753 1.01370 0.93709 1.21585 0.91697 0.82954 0.74622 1.90699 1.71433 1.33019 1.51225 1.48028 1.06514 1.07192 1.72230 1.22580 0.96514 0.82364 1.01040 1.22481 1.03630 0.98741 0.94881 1.22375 0.81115 0.98523 0.98837 1.86217 1.27917 1.35132 1.82645 1.21770 0.95058 0.85344 0.93179 0.95678 1.21975 0.93083 1.02070 0.88402 1.60011 1.13629 1.43202 1.14808 1.21546 0.89787 1.03399 0.92020 1.20854 0.82517 0.82408 0.91789 1.90485 1.48730 1.55756 1.56128 1.41911 1.07589 1.63317 1.08063 1.19643 0.94133 1.48541 0.84285 0.90391 1.26081 0.94648 0.96112 1.04501 1.69676 1.01992 1.48596 1.35761 0.84959 0.77460 0.78931 0.76783 1.19584 1.19295 1.19820 1.22165 0.81120 1.04156 0.96186 0.90761 0.91870 0.92569 0.93805 0.92792 0.93198 0.89432 0.89089 0.87082 0.88788 0.90419 0.86335 0.88425 0.94087 0.92747 0.89177 0.83232 0.91272 0.87839 0.76903 0.91235 0.87885 0.90271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.67 71.98 0.70 -0.73 16 2 C -0.11 -1.69 4.75 30.59 0.15 -1.54 16 3 C -0.11 -1.37 1.90 -11.54 -0.02 -1.39 16 4 H 0.11 1.06 7.40 -2.39 -0.02 1.04 16 5 C -0.15 -1.05 8.46 71.98 0.61 -0.44 16 6 C 0.50 10.59 7.04 87.66 0.62 11.21 16 7 O -0.58 -18.27 15.35 -3.04 -0.05 -18.31 16 8 N -0.61 -10.21 2.19 -818.06 -1.79 -12.00 16 9 C 0.10 0.77 4.47 86.38 0.39 1.15 16 10 C -0.16 -1.47 5.78 30.31 0.18 -1.30 16 11 C 0.07 1.17 6.37 71.50 0.46 1.62 16 12 O -0.40 -9.97 8.80 -117.82 -1.04 -11.01 16 13 C 0.11 2.77 2.91 31.19 0.09 2.86 16 14 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 15 C 0.07 2.03 5.42 86.30 0.47 2.49 16 16 N -0.68 -24.83 6.13 -517.91 -3.17 -28.00 16 17 C 0.06 2.43 6.17 85.56 0.53 2.96 16 18 C 0.44 22.18 7.82 87.66 0.69 22.86 16 19 O -0.62 -36.87 15.78 -3.07 -0.05 -36.91 16 20 N -0.57 -30.70 5.29 -306.99 -1.62 -32.32 16 21 C -0.34 -19.81 9.68 84.04 0.81 -19.00 16 22 H 0.08 4.88 7.16 -2.91 -0.02 4.86 16 23 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 24 N -0.92 -50.77 13.05 21.66 0.28 -50.48 16 25 Si 1.00 44.02 29.55 68.60 2.03 46.05 16 26 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 27 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 28 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 29 C 0.09 1.78 4.86 87.24 0.42 2.20 16 30 H 0.07 0.47 6.56 -2.39 -0.02 0.46 16 31 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.04 0.92 7.95 -2.39 -0.02 0.90 16 34 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.05 0.48 8.14 -2.39 -0.02 0.47 16 36 H 0.09 0.29 4.62 -2.39 -0.01 0.28 16 37 H 0.09 0.30 6.57 -2.39 -0.02 0.28 16 38 H 0.11 0.44 4.95 -2.39 -0.01 0.43 16 39 H 0.09 0.40 7.56 -2.39 -0.02 0.38 16 40 H 0.08 0.85 8.01 -2.39 -0.02 0.83 16 41 H 0.12 0.42 8.14 -2.38 -0.02 0.41 16 42 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.04 0.78 7.40 -2.39 -0.02 0.76 16 44 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.09 2.35 8.14 -2.38 -0.02 2.33 16 46 H 0.35 13.60 7.82 -89.70 -0.70 12.90 16 47 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 48 H 0.10 3.53 8.14 -2.39 -0.02 3.51 16 49 H 0.40 20.13 7.90 -92.71 -0.73 19.40 16 50 H 0.28 14.36 8.31 -92.70 -0.77 13.59 16 51 H 0.10 1.64 8.11 -2.39 -0.02 1.62 16 52 H 0.08 1.84 7.28 -2.39 -0.02 1.83 16 Total: -1.00 -79.53 405.43 0.63 -78.90 By element: Atomic # 1 Polarization: 41.90 SS G_CDS: -0.50 Total: 41.40 kcal Atomic # 6 Polarization: 16.16 SS G_CDS: 6.54 Total: 22.70 kcal Atomic # 7 Polarization: -116.50 SS G_CDS: -6.31 Total: -122.81 kcal Atomic # 8 Polarization: -65.10 SS G_CDS: -1.13 Total: -66.24 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -79.53 0.63 -78.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199886031.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.729 kcal (2) G-P(sol) polarization free energy of solvation -79.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds