Wall clock time and date at job start Wed Apr 1 2020 00:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47086 * 2 1 4 4 H 1.09001 * 109.47375 * 305.00215 * 3 2 1 5 5 C 1.52996 * 109.46975 * 65.00585 * 3 2 1 6 6 C 1.50703 * 109.47084 * 185.00257 * 3 2 1 7 7 O 1.21278 * 119.99985 * 0.02562 * 6 3 2 8 8 N 1.34779 * 119.99944 * 180.02562 * 6 3 2 9 9 C 1.46499 * 119.99872 * 180.02562 * 8 6 3 10 10 C 1.50701 * 109.46992 * 179.97438 * 9 8 6 11 11 O 1.21280 * 119.99781 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99795 * 179.97438 * 10 9 8 13 13 C 1.47501 * 118.75871 * 359.74091 * 12 10 9 14 14 C 1.53205 * 111.23671 * 221.50676 * 13 12 10 15 15 C 1.51543 * 109.43054 * 40.26227 * 14 13 12 16 16 O 1.42156 * 108.76368 * 268.50985 * 15 14 13 17 17 C 1.38013 * 119.43944 * 87.21501 * 16 15 14 18 18 H 1.09005 * 109.47013 * 56.57655 * 17 16 15 19 19 C 1.52998 * 109.46344 * 176.56800 * 17 16 15 20 20 N 1.46500 * 109.47407 * 300.00919 * 19 17 16 21 21 C 1.36937 * 120.00002 * 179.97438 * 20 19 17 22 22 H 1.07999 * 119.99827 * 0.02562 * 21 20 19 23 23 C 1.38811 * 119.99983 * 180.02562 * 21 20 19 24 24 N 1.31617 * 120.00116 * 180.02562 * 23 21 20 25 25 Si 1.86802 * 120.00047 * 0.02562 * 23 21 20 26 26 H 1.48503 * 109.47163 * 89.99589 * 25 23 21 27 27 H 1.48497 * 109.47014 * 209.99950 * 25 23 21 28 28 H 1.48506 * 109.46864 * 329.99928 * 25 23 21 29 29 C 1.45120 * 118.75163 * 180.02562 * 12 10 9 30 30 H 1.09001 * 109.47332 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46950 * 299.99500 * 1 2 3 32 32 H 1.08994 * 109.47556 * 59.99826 * 1 2 3 33 33 H 1.09000 * 109.46501 * 240.00211 * 2 1 3 34 34 H 1.09004 * 109.47208 * 120.00628 * 2 1 3 35 35 H 1.09004 * 109.47368 * 299.99783 * 5 3 2 36 36 H 1.09001 * 109.47372 * 59.99628 * 5 3 2 37 37 H 1.09004 * 109.47108 * 179.97438 * 5 3 2 38 38 H 0.97000 * 119.99708 * 359.97438 * 8 6 3 39 39 H 1.09002 * 109.47391 * 59.99686 * 9 8 6 40 40 H 1.09001 * 109.46813 * 299.99742 * 9 8 6 41 41 H 1.09011 * 109.16339 * 342.01877 * 13 12 10 42 42 H 1.08994 * 109.17313 * 101.22453 * 13 12 10 43 43 H 1.08998 * 109.60720 * 280.22763 * 14 13 12 44 44 H 1.08995 * 109.42757 * 160.18603 * 14 13 12 45 45 H 1.08998 * 109.58498 * 148.72139 * 15 14 13 46 46 H 1.09006 * 109.58366 * 28.28954 * 15 14 13 47 47 H 1.08998 * 109.47252 * 60.01868 * 19 17 16 48 48 H 1.09001 * 109.46929 * 180.02562 * 19 17 16 49 49 H 0.97000 * 119.99821 * 0.02562 * 20 19 17 50 50 H 0.97001 * 120.00078 * 180.02562 * 24 23 21 51 51 H 1.08996 * 109.45938 * 210.72668 * 29 12 10 52 52 H 1.09001 * 109.46454 * 330.70148 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 1.6353 2.1264 1.3074 6 6 3.5419 1.4443 -0.1239 7 8 4.1449 0.3952 -0.2047 8 7 4.2149 2.6118 -0.1449 9 6 5.6749 2.6136 -0.2659 10 6 6.1773 4.0344 -0.2657 11 8 5.3930 4.9548 -0.1732 12 7 7.4982 4.2821 -0.3675 13 6 8.4281 3.1419 -0.4717 14 6 9.6805 3.3675 0.3815 15 6 9.2852 4.0034 1.6990 16 8 9.3503 5.4169 1.5622 17 6 8.2511 6.1038 1.0882 18 1 7.3883 5.8883 1.7186 19 6 8.5389 7.6063 1.1139 20 7 8.8217 8.0259 2.4887 21 6 9.1101 9.3371 2.7588 22 1 9.1286 10.0618 1.9583 23 6 9.3786 9.7346 4.0614 24 7 9.6553 10.9949 4.3210 25 14 9.3473 8.4808 5.4458 26 1 10.7004 7.8913 5.6104 27 1 8.9410 9.1480 6.7087 28 1 8.3757 7.4064 5.1186 29 6 7.9522 5.6605 -0.3640 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8932 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 0.5490 2.1251 1.3971 36 1 2.0700 1.5873 2.1492 37 1 1.9991 3.1540 1.3076 38 1 3.7325 3.4509 -0.0806 39 1 5.9629 2.1268 -1.1977 40 1 6.1098 2.0739 0.5754 41 1 7.9235 2.2366 -0.1339 42 1 8.7263 3.0172 -1.5126 43 1 10.3695 4.0261 -0.1473 44 1 10.1667 2.4107 0.5717 45 1 9.9717 3.6799 2.4814 46 1 8.2682 3.7077 1.9569 47 1 9.4015 7.8218 0.4834 48 1 7.6707 8.1489 0.7400 49 1 8.8055 7.3749 3.2076 50 1 9.8433 11.2726 5.2312 51 1 8.8585 5.7457 -0.9634 52 1 7.1764 6.2995 -0.7858 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202088363.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:37:58 Heat of formation + Delta-G solvation = -104.221766 kcal Electronic energy + Delta-G solvation = -30843.749418 eV Core-core repulsion = 26650.841853 eV Total energy + Delta-G solvation = -4192.907565 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.05026 -40.13933 -38.72158 -35.94997 -35.87505 -34.96882 -34.72795 -32.98471 -31.20018 -30.67049 -29.62643 -28.03463 -26.70339 -25.67728 -24.97389 -22.63805 -21.90905 -21.83660 -21.08990 -20.35023 -19.41720 -18.08936 -17.68885 -17.09406 -16.82376 -16.61463 -16.42399 -16.01353 -15.75754 -15.30054 -14.95406 -14.64760 -14.35677 -14.16439 -14.06650 -13.89591 -13.66996 -13.47697 -13.18592 -12.90925 -12.86328 -12.63611 -12.52886 -12.47617 -12.20279 -12.07932 -12.00000 -11.92127 -11.53622 -11.26340 -11.23195 -11.08470 -10.99525 -10.82915 -10.44773 -10.19570 -10.13276 -10.05287 -9.60543 -9.55022 -9.54682 -8.86425 -8.80016 -7.17281 -5.71878 -3.06362 2.16030 2.29087 2.36902 2.94394 3.42775 3.47158 3.49328 3.76278 3.95066 4.25224 4.36163 4.42189 4.49628 4.53770 4.65073 4.75492 4.83055 4.86278 4.92996 4.97868 5.01863 5.08288 5.11838 5.17342 5.18470 5.28772 5.34825 5.41138 5.42825 5.47960 5.57783 5.57856 5.64944 5.67361 5.74710 5.82092 5.83805 5.90063 5.91916 5.95931 5.97549 6.25548 6.53179 6.64730 6.90342 7.11353 7.71769 7.79656 7.83756 8.03982 8.47094 9.26811 9.99332 10.20097 11.46505 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013495 B = 0.002423 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.300697 B =11554.260865 C =12585.069725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.105 4.105 3 C -0.109 4.109 4 H 0.099 0.901 5 C -0.149 4.149 6 C 0.520 3.480 7 O -0.542 6.542 8 N -0.719 5.719 9 C 0.100 3.900 10 C 0.502 3.498 11 O -0.528 6.528 12 N -0.603 5.603 13 C 0.101 3.899 14 C -0.167 4.167 15 C 0.071 3.929 16 O -0.371 6.371 17 C 0.084 3.916 18 H 0.051 0.949 19 C 0.171 3.829 20 N -0.749 5.749 21 C -0.241 4.241 22 H 0.090 0.910 23 C 0.003 3.997 24 N -0.935 5.935 25 Si 0.887 3.113 26 H -0.284 1.284 27 H -0.292 1.292 28 H -0.279 1.279 29 C 0.081 3.919 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.413 0.587 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.084 0.916 42 H 0.073 0.927 43 H 0.086 0.914 44 H 0.088 0.912 45 H 0.091 0.909 46 H 0.046 0.954 47 H 0.036 0.964 48 H 0.043 0.957 49 H 0.364 0.636 50 H 0.259 0.741 51 H 0.088 0.912 52 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.342 -24.973 -12.586 30.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.143 4.143 3 C -0.130 4.130 4 H 0.117 0.883 5 C -0.206 4.206 6 C 0.307 3.693 7 O -0.419 6.419 8 N -0.375 5.375 9 C -0.027 4.027 10 C 0.289 3.711 11 O -0.405 6.405 12 N -0.337 5.337 13 C -0.021 4.021 14 C -0.205 4.205 15 C -0.006 4.006 16 O -0.289 6.289 17 C 0.024 3.976 18 H 0.069 0.931 19 C 0.043 3.957 20 N -0.395 5.395 21 C -0.371 4.371 22 H 0.108 0.892 23 C -0.192 4.192 24 N -0.583 5.583 25 Si 0.718 3.282 26 H -0.210 1.210 27 H -0.219 1.219 28 H -0.205 1.205 29 C -0.043 4.043 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.251 0.749 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.102 0.898 42 H 0.091 0.909 43 H 0.104 0.896 44 H 0.107 0.893 45 H 0.109 0.891 46 H 0.064 0.936 47 H 0.054 0.946 48 H 0.061 0.939 49 H 0.197 0.803 50 H 0.069 0.931 51 H 0.106 0.894 52 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -12.098 -24.879 -12.603 30.400 hybrid contribution -0.247 -0.610 0.951 1.156 sum -12.344 -25.488 -11.652 30.624 Atomic orbital electron populations 1.21849 0.95344 1.01982 1.02007 1.21347 0.95480 0.93953 1.03508 1.21353 0.91083 0.99668 1.00946 0.88280 1.21863 1.02622 1.00524 0.95603 1.20762 0.90256 0.82994 0.75311 1.90697 1.70377 1.31390 1.49464 1.45809 1.06285 1.10165 1.75201 1.21132 0.82638 0.94524 1.04420 1.20594 0.82802 0.91091 0.76646 1.90734 1.54751 1.45916 1.49080 1.47887 1.05774 1.07584 1.72409 1.22025 0.91167 0.87985 1.00960 1.22440 0.97444 1.02845 0.97775 1.22164 1.00846 0.81427 0.96137 1.86433 1.39166 1.18443 1.84830 1.22331 0.88915 0.93967 0.92347 0.93127 1.20593 0.98800 0.87467 0.88844 1.42542 1.86223 1.07723 1.03006 1.19055 1.39406 0.84153 0.94485 0.89183 1.24651 1.01735 0.95862 0.96984 1.69705 1.54448 1.14571 1.19607 0.86499 0.77872 0.81208 0.82666 1.21042 1.21869 1.20496 1.22452 1.01518 0.81134 0.99146 0.92405 0.92319 0.92644 0.91129 0.91257 0.90913 0.91960 0.91832 0.74870 0.88386 0.88431 0.89755 0.90851 0.89582 0.89347 0.89135 0.93580 0.94649 0.93912 0.80272 0.93127 0.89351 0.88470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.67 37.16 0.36 -0.45 16 2 C -0.10 -0.74 4.75 -26.73 -0.13 -0.87 16 3 C -0.11 -0.77 2.72 -91.77 -0.25 -1.02 16 4 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 5 C -0.15 -0.93 8.84 37.16 0.33 -0.60 16 6 C 0.52 5.08 7.15 -10.98 -0.08 5.00 16 7 O -0.54 -6.94 15.92 5.56 0.09 -6.85 16 8 N -0.72 -6.67 5.42 -61.47 -0.33 -7.00 16 9 C 0.10 0.90 4.49 -5.19 -0.02 0.88 16 10 C 0.50 5.65 7.70 -10.98 -0.08 5.57 16 11 O -0.53 -7.69 15.10 5.56 0.08 -7.60 16 12 N -0.60 -6.29 2.20 -172.74 -0.38 -6.67 16 13 C 0.10 0.73 5.96 -3.39 -0.02 0.71 16 14 C -0.17 -1.35 5.78 -27.36 -0.16 -1.51 16 15 C 0.07 0.82 6.37 36.42 0.23 1.05 16 16 O -0.37 -5.95 9.18 -26.53 -0.24 -6.20 16 17 C 0.08 1.37 2.73 -25.81 -0.07 1.30 16 18 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 19 C 0.17 3.40 5.95 -4.04 -0.02 3.38 16 20 N -0.75 -18.69 5.29 -59.91 -0.32 -19.01 16 21 C -0.24 -7.04 10.47 -15.06 -0.16 -7.20 16 22 H 0.09 2.78 8.06 -52.49 -0.42 2.35 16 23 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 24 N -0.94 -29.96 13.97 55.49 0.78 -29.18 16 25 Si 0.89 22.98 27.74 -169.99 -4.71 18.27 16 26 H -0.28 -7.29 7.11 56.52 0.40 -6.89 16 27 H -0.29 -7.60 7.11 56.52 0.40 -7.19 16 28 H -0.28 -6.90 6.52 56.52 0.37 -6.53 16 29 C 0.08 1.02 4.86 -3.86 -0.02 1.00 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.28 6.57 -51.93 -0.34 -0.06 16 32 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.07 0.56 7.95 -51.93 -0.41 0.15 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.36 6.57 -51.93 -0.34 0.02 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.40 7.56 -51.93 -0.39 0.01 16 38 H 0.41 3.75 6.85 -40.82 -0.28 3.47 16 39 H 0.10 0.76 8.05 -51.93 -0.42 0.35 16 40 H 0.10 0.82 7.40 -51.93 -0.38 0.44 16 41 H 0.08 0.47 5.88 -51.92 -0.31 0.17 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.09 0.78 8.01 -51.93 -0.42 0.37 16 44 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 46 H 0.05 0.53 7.39 -51.93 -0.38 0.14 16 47 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 49 H 0.36 9.08 5.39 -40.82 -0.22 8.86 16 50 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 51 H 0.09 1.00 8.11 -51.93 -0.42 0.58 16 52 H 0.10 1.30 7.27 -51.93 -0.38 0.93 16 LS Contribution 407.46 15.07 6.14 6.14 Total: -1.00 -36.33 407.46 -8.03 -44.36 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -8.94 Total: 6.50 kcal Atomic # 6 Polarization: 7.43 SS G_CDS: -0.19 Total: 7.24 kcal Atomic # 7 Polarization: -61.61 SS G_CDS: -0.26 Total: -61.87 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: -0.07 Total: -20.65 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -4.71 Total: 18.27 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -36.33 -8.03 -44.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202088363.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.866 kcal (2) G-P(sol) polarization free energy of solvation -36.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds