Wall clock time and date at job start Wed Apr 1 2020 00:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47086 * 2 1 4 4 H 1.09001 * 109.47375 * 305.00215 * 3 2 1 5 5 C 1.52996 * 109.46975 * 65.00585 * 3 2 1 6 6 C 1.50703 * 109.47084 * 185.00257 * 3 2 1 7 7 O 1.21278 * 119.99985 * 0.02562 * 6 3 2 8 8 N 1.34779 * 119.99944 * 180.02562 * 6 3 2 9 9 C 1.46499 * 119.99872 * 180.02562 * 8 6 3 10 10 C 1.50701 * 109.46992 * 179.97438 * 9 8 6 11 11 O 1.21280 * 119.99781 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99795 * 179.97438 * 10 9 8 13 13 C 1.47501 * 118.75871 * 359.74091 * 12 10 9 14 14 C 1.53205 * 111.23671 * 221.50676 * 13 12 10 15 15 C 1.51543 * 109.43054 * 40.26227 * 14 13 12 16 16 O 1.42156 * 108.76368 * 268.50985 * 15 14 13 17 17 C 1.38013 * 119.43944 * 87.21501 * 16 15 14 18 18 H 1.09005 * 109.47013 * 56.57655 * 17 16 15 19 19 C 1.52998 * 109.46344 * 176.56800 * 17 16 15 20 20 N 1.46500 * 109.47407 * 300.00919 * 19 17 16 21 21 C 1.36937 * 120.00002 * 179.97438 * 20 19 17 22 22 H 1.07999 * 119.99827 * 0.02562 * 21 20 19 23 23 C 1.38811 * 119.99983 * 180.02562 * 21 20 19 24 24 N 1.31617 * 120.00116 * 180.02562 * 23 21 20 25 25 Si 1.86802 * 120.00047 * 0.02562 * 23 21 20 26 26 H 1.48503 * 109.47163 * 89.99589 * 25 23 21 27 27 H 1.48497 * 109.47014 * 209.99950 * 25 23 21 28 28 H 1.48506 * 109.46864 * 329.99928 * 25 23 21 29 29 C 1.45120 * 118.75163 * 180.02562 * 12 10 9 30 30 H 1.09001 * 109.47332 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46950 * 299.99500 * 1 2 3 32 32 H 1.08994 * 109.47556 * 59.99826 * 1 2 3 33 33 H 1.09000 * 109.46501 * 240.00211 * 2 1 3 34 34 H 1.09004 * 109.47208 * 120.00628 * 2 1 3 35 35 H 1.09004 * 109.47368 * 299.99783 * 5 3 2 36 36 H 1.09001 * 109.47372 * 59.99628 * 5 3 2 37 37 H 1.09004 * 109.47108 * 179.97438 * 5 3 2 38 38 H 0.97000 * 119.99708 * 359.97438 * 8 6 3 39 39 H 1.09002 * 109.47391 * 59.99686 * 9 8 6 40 40 H 1.09001 * 109.46813 * 299.99742 * 9 8 6 41 41 H 1.09011 * 109.16339 * 342.01877 * 13 12 10 42 42 H 1.08994 * 109.17313 * 101.22453 * 13 12 10 43 43 H 1.08998 * 109.60720 * 280.22763 * 14 13 12 44 44 H 1.08995 * 109.42757 * 160.18603 * 14 13 12 45 45 H 1.08998 * 109.58498 * 148.72139 * 15 14 13 46 46 H 1.09006 * 109.58366 * 28.28954 * 15 14 13 47 47 H 1.08998 * 109.47252 * 60.01868 * 19 17 16 48 48 H 1.09001 * 109.46929 * 180.02562 * 19 17 16 49 49 H 0.97000 * 119.99821 * 0.02562 * 20 19 17 50 50 H 0.97001 * 120.00078 * 180.02562 * 24 23 21 51 51 H 1.08996 * 109.45938 * 210.72668 * 29 12 10 52 52 H 1.09001 * 109.46454 * 330.70148 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 1.6353 2.1264 1.3074 6 6 3.5419 1.4443 -0.1239 7 8 4.1449 0.3952 -0.2047 8 7 4.2149 2.6118 -0.1449 9 6 5.6749 2.6136 -0.2659 10 6 6.1773 4.0344 -0.2657 11 8 5.3930 4.9548 -0.1732 12 7 7.4982 4.2821 -0.3675 13 6 8.4281 3.1419 -0.4717 14 6 9.6805 3.3675 0.3815 15 6 9.2852 4.0034 1.6990 16 8 9.3503 5.4169 1.5622 17 6 8.2511 6.1038 1.0882 18 1 7.3883 5.8883 1.7186 19 6 8.5389 7.6063 1.1139 20 7 8.8217 8.0259 2.4887 21 6 9.1101 9.3371 2.7588 22 1 9.1286 10.0618 1.9583 23 6 9.3786 9.7346 4.0614 24 7 9.6553 10.9949 4.3210 25 14 9.3473 8.4808 5.4458 26 1 10.7004 7.8913 5.6104 27 1 8.9410 9.1480 6.7087 28 1 8.3757 7.4064 5.1186 29 6 7.9522 5.6605 -0.3640 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8932 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 0.5490 2.1251 1.3971 36 1 2.0700 1.5873 2.1492 37 1 1.9991 3.1540 1.3076 38 1 3.7325 3.4509 -0.0806 39 1 5.9629 2.1268 -1.1977 40 1 6.1098 2.0739 0.5754 41 1 7.9235 2.2366 -0.1339 42 1 8.7263 3.0172 -1.5126 43 1 10.3695 4.0261 -0.1473 44 1 10.1667 2.4107 0.5717 45 1 9.9717 3.6799 2.4814 46 1 8.2682 3.7077 1.9569 47 1 9.4015 7.8218 0.4834 48 1 7.6707 8.1489 0.7400 49 1 8.8055 7.3749 3.2076 50 1 9.8433 11.2726 5.2312 51 1 8.8585 5.7457 -0.9634 52 1 7.1764 6.2995 -0.7858 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202088363.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:37:57 Heat of formation + Delta-G solvation = -130.681493 kcal Electronic energy + Delta-G solvation = -30844.896798 eV Core-core repulsion = 26650.841853 eV Total energy + Delta-G solvation = -4194.054944 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.93886 -40.95274 -39.76492 -37.09902 -36.45990 -36.38283 -35.67638 -34.36936 -33.02883 -31.39756 -30.58210 -29.13077 -27.53289 -26.62881 -25.99102 -24.16529 -22.99012 -22.58174 -22.38734 -21.03664 -20.21914 -19.81869 -18.83948 -18.00692 -17.81263 -17.53913 -17.29272 -16.96514 -16.61302 -16.39048 -16.18436 -15.84105 -15.45294 -15.17952 -14.97018 -14.87297 -14.80815 -14.46683 -14.35455 -14.02938 -13.86259 -13.76029 -13.59071 -13.46480 -13.22886 -12.98913 -12.86450 -12.63270 -12.58266 -12.54306 -12.40273 -12.15092 -12.05406 -11.84557 -11.73677 -11.59738 -11.52996 -11.11084 -11.03331 -10.88108 -10.61925 -10.30056 -9.76478 -9.32470 -8.04501 -5.37407 1.30433 1.34838 1.38468 1.45644 1.54250 1.58048 2.22388 2.46424 2.65646 3.18429 3.26928 3.45454 3.63785 3.79113 3.83554 3.90920 3.96102 4.00811 4.03781 4.12947 4.19207 4.25622 4.27173 4.39079 4.41774 4.46671 4.50992 4.61288 4.65717 4.70540 4.70949 4.81567 4.85698 4.93717 5.00811 5.04965 5.09033 5.10421 5.15235 5.15864 5.23148 5.35865 5.41222 5.49806 5.72105 6.08688 6.19060 6.38306 6.67552 6.86736 7.05095 7.09616 7.81071 8.00922 9.16808 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013495 B = 0.002423 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.300697 B =11554.260865 C =12585.069725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.103 4.103 3 C -0.106 4.106 4 H 0.117 0.883 5 C -0.146 4.146 6 C 0.518 3.482 7 O -0.575 6.575 8 N -0.718 5.718 9 C 0.104 3.896 10 C 0.501 3.499 11 O -0.567 6.567 12 N -0.601 5.601 13 C 0.096 3.904 14 C -0.158 4.158 15 C 0.061 3.939 16 O -0.398 6.398 17 C 0.100 3.900 18 H 0.030 0.970 19 C 0.164 3.836 20 N -0.753 5.753 21 C -0.235 4.235 22 H 0.060 0.940 23 C -0.063 4.063 24 N -0.981 5.981 25 Si 0.958 3.042 26 H -0.276 1.276 27 H -0.292 1.292 28 H -0.262 1.262 29 C 0.093 3.907 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.089 0.911 36 H 0.052 0.948 37 H 0.061 0.939 38 H 0.414 0.586 39 H 0.116 0.884 40 H 0.108 0.892 41 H 0.106 0.894 42 H 0.097 0.903 43 H 0.078 0.922 44 H 0.120 0.880 45 H 0.099 0.901 46 H 0.045 0.955 47 H 0.038 0.962 48 H 0.041 0.959 49 H 0.366 0.634 50 H 0.259 0.741 51 H 0.105 0.895 52 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.761 -28.007 -13.119 33.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.141 4.141 3 C -0.127 4.127 4 H 0.135 0.865 5 C -0.203 4.203 6 C 0.307 3.693 7 O -0.455 6.455 8 N -0.373 5.373 9 C -0.022 4.022 10 C 0.289 3.711 11 O -0.446 6.446 12 N -0.333 5.333 13 C -0.025 4.025 14 C -0.196 4.196 15 C -0.015 4.015 16 O -0.317 6.317 17 C 0.040 3.960 18 H 0.048 0.952 19 C 0.038 3.962 20 N -0.399 5.399 21 C -0.365 4.365 22 H 0.078 0.922 23 C -0.255 4.255 24 N -0.632 5.632 25 Si 0.785 3.215 26 H -0.203 1.203 27 H -0.219 1.219 28 H -0.187 1.187 29 C -0.031 4.031 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.107 0.893 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.253 0.747 39 H 0.134 0.866 40 H 0.126 0.874 41 H 0.124 0.876 42 H 0.116 0.884 43 H 0.097 0.903 44 H 0.138 0.862 45 H 0.117 0.883 46 H 0.063 0.937 47 H 0.056 0.944 48 H 0.059 0.941 49 H 0.199 0.801 50 H 0.067 0.933 51 H 0.123 0.877 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -12.511 -27.963 -13.177 33.348 hybrid contribution -0.080 0.346 1.043 1.102 sum -12.591 -27.617 -12.134 32.687 Atomic orbital electron populations 1.21827 0.93772 1.02461 1.02732 1.21314 0.96783 0.93695 1.02301 1.21402 0.89250 0.99986 1.02042 0.86541 1.21855 1.03638 1.00097 0.94722 1.21221 0.91274 0.82438 0.74405 1.90678 1.71214 1.32408 1.51166 1.45869 1.06567 1.10151 1.74720 1.21191 0.82521 0.92853 1.05682 1.20987 0.82740 0.91614 0.75710 1.90720 1.55808 1.47220 1.50870 1.47951 1.06159 1.07462 1.71682 1.22331 0.90422 0.87275 1.02439 1.22375 0.97731 1.03827 0.95641 1.22466 1.01230 0.79148 0.98606 1.86360 1.38903 1.21102 1.85299 1.21938 0.88102 0.91563 0.94387 0.95215 1.20755 0.98559 0.90667 0.86248 1.42559 1.86081 1.06083 1.05152 1.19064 1.38131 0.85526 0.93818 0.92172 1.25480 1.02238 0.97974 0.99813 1.69875 1.56273 1.16837 1.20184 0.85369 0.78426 0.78864 0.78829 1.20251 1.21869 1.18679 1.22150 1.01905 0.82495 0.96591 0.92124 0.91603 0.91853 0.92321 0.92526 0.89269 0.92849 0.91948 0.74731 0.86632 0.87447 0.87582 0.88449 0.90347 0.86195 0.88330 0.93673 0.94422 0.94080 0.80146 0.93257 0.87682 0.89559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.67 71.98 0.70 -0.62 16 2 C -0.10 -1.35 4.75 30.59 0.15 -1.20 16 3 C -0.11 -1.34 2.72 -11.54 -0.03 -1.37 16 4 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 5 C -0.15 -1.60 8.84 71.98 0.64 -0.97 16 6 C 0.52 9.49 7.15 87.66 0.63 10.12 16 7 O -0.58 -14.11 15.92 -3.02 -0.05 -14.16 16 8 N -0.72 -12.31 5.42 -466.78 -2.53 -14.84 16 9 C 0.10 1.64 4.49 85.63 0.38 2.03 16 10 C 0.50 10.49 7.70 87.66 0.67 11.16 16 11 O -0.57 -16.21 15.10 -3.03 -0.05 -16.25 16 12 N -0.60 -11.19 2.20 -818.80 -1.80 -13.00 16 13 C 0.10 1.03 5.96 86.26 0.51 1.55 16 14 C -0.16 -2.00 5.78 30.19 0.17 -1.82 16 15 C 0.06 1.27 6.37 71.50 0.46 1.72 16 16 O -0.40 -12.25 9.18 -117.84 -1.08 -13.34 16 17 C 0.10 3.20 2.73 31.19 0.09 3.28 16 18 H 0.03 1.07 8.14 -2.38 -0.02 1.05 16 19 C 0.16 6.61 5.95 86.38 0.51 7.12 16 20 N -0.75 -37.77 5.29 -343.46 -1.82 -39.58 16 21 C -0.23 -14.00 10.47 84.03 0.88 -13.12 16 22 H 0.06 3.87 8.06 -2.91 -0.02 3.85 16 23 C -0.06 -3.89 5.50 84.86 0.47 -3.42 16 24 N -0.98 -64.36 13.97 21.65 0.30 -64.06 16 25 Si 0.96 47.77 27.74 68.60 1.90 49.67 16 26 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 27 H -0.29 -14.49 7.11 99.48 0.71 -13.79 16 28 H -0.26 -12.16 6.52 99.48 0.65 -11.51 16 29 C 0.09 2.23 4.86 87.24 0.42 2.65 16 30 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.07 0.49 6.57 -2.39 -0.02 0.47 16 32 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.06 0.90 7.95 -2.39 -0.02 0.88 16 34 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.09 0.69 6.57 -2.39 -0.02 0.67 16 36 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.06 0.71 7.56 -2.38 -0.02 0.69 16 38 H 0.41 7.10 6.85 -92.71 -0.64 6.47 16 39 H 0.12 1.45 8.05 -2.39 -0.02 1.43 16 40 H 0.11 1.52 7.40 -2.39 -0.02 1.50 16 41 H 0.11 0.73 5.88 -2.38 -0.01 0.72 16 42 H 0.10 0.68 8.14 -2.39 -0.02 0.67 16 43 H 0.08 1.17 8.01 -2.39 -0.02 1.16 16 44 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 46 H 0.04 0.94 7.39 -2.38 -0.02 0.92 16 47 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 48 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 49 H 0.37 17.98 5.39 -92.71 -0.50 17.48 16 50 H 0.26 16.09 8.31 -92.71 -0.77 15.32 16 51 H 0.11 2.18 8.11 -2.39 -0.02 2.16 16 52 H 0.09 2.28 7.27 -2.39 -0.02 2.26 16 Total: -1.00 -80.69 407.46 1.25 -79.44 By element: Atomic # 1 Polarization: 29.28 SS G_CDS: -0.27 Total: 29.00 kcal Atomic # 6 Polarization: 10.48 SS G_CDS: 6.65 Total: 17.12 kcal Atomic # 7 Polarization: -125.63 SS G_CDS: -5.85 Total: -131.48 kcal Atomic # 8 Polarization: -42.58 SS G_CDS: -1.18 Total: -43.75 kcal Atomic # 14 Polarization: 47.77 SS G_CDS: 1.90 Total: 49.67 kcal Total: -80.69 1.25 -79.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202088363.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.246 kcal (2) G-P(sol) polarization free energy of solvation -80.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds