Wall clock time and date at job start Wed Apr 1 2020 00:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47013 * 2 1 4 4 H 1.09000 * 109.46676 * 305.51649 * 3 2 1 5 5 O 1.42902 * 109.47021 * 65.51778 * 3 2 1 6 6 C 1.42902 * 113.99802 * 264.75173 * 5 3 2 7 7 C 1.50697 * 109.46893 * 185.51870 * 3 2 1 8 8 O 1.21285 * 119.99981 * 249.27384 * 7 3 2 9 9 N 1.34773 * 120.00525 * 69.28038 * 7 3 2 10 10 C 1.46924 * 120.62713 * 4.13308 * 9 7 3 11 11 C 1.52757 * 109.01166 * 233.58761 * 10 9 7 12 12 C 1.53050 * 109.38124 * 305.58956 * 11 10 9 13 13 C 1.52997 * 109.44915 * 181.25168 * 12 11 10 14 14 N 1.46899 * 109.47408 * 64.93816 * 13 12 11 15 15 C 1.46894 * 111.00522 * 180.02562 * 14 13 12 16 16 C 1.50701 * 109.47464 * 180.02562 * 15 14 13 17 17 O 1.21291 * 119.99822 * 359.97438 * 16 15 14 18 18 N 1.34777 * 120.00005 * 180.02562 * 16 15 14 19 19 C 1.37095 * 119.99860 * 179.97438 * 18 16 15 20 20 H 1.08006 * 120.00331 * 359.97438 * 19 18 16 21 21 C 1.38954 * 119.99999 * 180.02562 * 19 18 16 22 22 N 1.31407 * 119.99929 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99924 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47177 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47475 * 119.99647 * 23 21 19 26 26 H 1.48505 * 109.46739 * 239.99649 * 23 21 19 27 27 C 1.53039 * 109.53552 * 61.23646 * 12 11 10 28 28 C 1.46920 * 120.63568 * 184.41595 * 9 7 3 29 29 H 1.09003 * 109.47008 * 294.29021 * 1 2 3 30 30 H 1.08999 * 109.47413 * 54.29286 * 1 2 3 31 31 H 1.09002 * 109.46965 * 174.29495 * 1 2 3 32 32 H 1.08996 * 109.47112 * 120.00274 * 2 1 3 33 33 H 1.09005 * 109.47036 * 240.00032 * 2 1 3 34 34 H 1.09003 * 109.47019 * 185.25505 * 6 5 3 35 35 H 1.08994 * 109.47018 * 305.25631 * 6 5 3 36 36 H 1.08999 * 109.46891 * 65.25987 * 6 5 3 37 37 H 1.09003 * 109.58928 * 353.42252 * 10 9 7 38 38 H 1.09004 * 109.58808 * 113.84375 * 10 9 7 39 39 H 1.09004 * 109.56947 * 185.55573 * 11 10 9 40 40 H 1.08997 * 109.36377 * 65.49603 * 11 10 9 41 41 H 1.08993 * 109.45697 * 301.21582 * 12 11 10 42 42 H 1.08999 * 109.47347 * 184.93474 * 13 12 11 43 43 H 1.08998 * 109.47132 * 304.93880 * 13 12 11 44 44 H 1.00900 * 110.99873 * 56.04268 * 14 13 12 45 45 H 1.09003 * 109.46753 * 300.00215 * 15 14 13 46 46 H 1.09000 * 109.47196 * 59.99446 * 15 14 13 47 47 H 0.96998 * 120.00356 * 359.97438 * 18 16 15 48 48 H 0.97001 * 120.00323 * 180.02562 * 22 21 19 49 49 H 1.09005 * 109.49425 * 178.68150 * 27 12 11 50 50 H 1.08997 * 109.52323 * 58.60902 * 27 12 11 51 51 H 1.09000 * 109.59088 * 246.15955 * 28 9 7 52 52 H 1.09004 * 109.58499 * 6.43655 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5981 1.9840 -0.8365 5 8 1.6723 2.0777 1.2262 6 6 0.4604 2.8310 1.1499 7 6 3.5407 1.4447 -0.1366 8 8 4.2343 1.7856 0.7981 9 7 4.1123 1.0679 -1.2975 10 6 3.2857 0.7393 -2.4669 11 6 3.6736 -0.6475 -2.9766 12 6 5.1806 -0.6886 -3.2402 13 6 5.5660 -2.0672 -3.7803 14 7 4.9350 -2.2736 -5.0907 15 6 5.2829 -3.5904 -5.6411 16 6 4.6195 -3.7654 -6.9828 17 8 3.9247 -2.8804 -7.4358 18 7 4.7974 -4.9057 -7.6789 19 6 4.1934 -5.0651 -8.8993 20 1 3.5746 -4.2770 -9.3027 21 6 4.3763 -6.2409 -9.6168 22 7 5.1287 -7.1999 -9.1258 23 14 3.5539 -6.4577 -11.2799 24 1 2.7667 -5.2413 -11.6053 25 1 4.5911 -6.6698 -12.3212 26 1 2.6495 -7.6348 -11.2351 27 6 5.9357 -0.4226 -1.9359 28 6 5.5736 0.9721 -1.4161 29 1 -0.3633 0.4228 0.9367 30 1 -0.3634 0.5998 -0.8344 31 1 -0.3633 -1.0226 -0.1022 32 1 1.8933 -0.5139 0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 0.2995 3.3567 2.0911 35 1 0.5326 3.5542 0.3376 36 1 -0.3754 2.1568 0.9629 37 1 2.2333 0.7414 -2.1827 38 1 3.4555 1.4751 -3.2529 39 1 3.1366 -0.8601 -3.9011 40 1 3.4153 -1.3939 -2.2254 41 1 5.4419 0.0746 -3.9731 42 1 6.6493 -2.1265 -3.8854 43 1 5.2254 -2.8369 -3.0878 44 1 5.1842 -1.5359 -5.7323 45 1 6.3643 -3.6606 -5.7589 46 1 4.9402 -4.3704 -4.9613 47 1 5.3527 -5.6136 -7.3165 48 1 5.2567 -8.0206 -9.6267 49 1 7.0089 -0.4752 -2.1196 50 1 5.6566 -1.1711 -1.1943 51 1 5.9339 1.7273 -2.1146 52 1 6.0306 1.1304 -0.4392 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204710214.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:50:08 Heat of formation + Delta-G solvation = -122.290866 kcal Electronic energy + Delta-G solvation = -30226.991536 eV Core-core repulsion = 26033.300437 eV Total energy + Delta-G solvation = -4193.691099 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -40.81833 -38.80346 -38.24798 -37.54046 -35.60273 -34.06191 -33.78542 -32.65883 -31.36277 -31.21367 -29.04831 -27.99238 -26.27203 -25.46751 -23.98844 -23.51698 -22.65085 -22.00676 -20.87141 -19.45497 -19.09942 -17.97017 -17.84215 -17.10808 -16.22037 -16.14648 -15.88300 -15.59699 -15.21879 -14.89589 -14.69900 -14.68413 -14.37204 -14.35860 -13.90577 -13.74622 -13.66180 -13.45687 -13.23079 -12.87378 -12.86257 -12.65960 -12.40432 -12.25789 -12.12360 -11.83478 -11.75904 -11.59240 -11.53142 -11.46024 -11.16823 -11.08807 -10.92889 -10.69512 -10.62766 -10.36530 -10.24645 -10.22313 -9.62665 -9.54353 -8.91115 -8.48386 -8.07697 -7.98187 -6.44131 -3.84998 2.31436 2.47639 3.14328 3.25046 3.32050 3.50631 3.88527 4.05390 4.11620 4.27070 4.38436 4.45435 4.49731 4.62472 4.77460 4.79504 4.86432 4.89558 4.97146 5.01309 5.08632 5.12847 5.15572 5.23429 5.24051 5.26194 5.30235 5.43551 5.49922 5.51136 5.55957 5.64902 5.68831 5.73880 5.78447 5.80165 5.85264 5.87769 5.96482 6.07092 6.21935 6.26338 6.33310 6.66299 7.10529 7.18892 7.52999 7.63510 7.91623 8.04163 8.58728 9.15562 9.52107 10.03245 10.73650 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.019140 B = 0.001845 C = 0.001738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.559954 B =15171.465654 C =16107.770646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.145 4.145 3 C 0.074 3.926 4 H 0.086 0.914 5 O -0.358 6.358 6 C 0.021 3.979 7 C 0.515 3.485 8 O -0.525 6.525 9 N -0.609 5.609 10 C 0.097 3.903 11 C -0.124 4.124 12 C -0.083 4.083 13 C 0.063 3.937 14 N -0.667 5.667 15 C 0.051 3.949 16 C 0.441 3.559 17 O -0.584 6.584 18 N -0.564 5.564 19 C -0.299 4.299 20 H 0.104 0.896 21 C 0.021 3.979 22 N -0.901 5.901 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.281 1.281 27 C -0.129 4.129 28 C 0.114 3.886 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.042 0.958 36 H 0.052 0.948 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.098 0.902 40 H 0.065 0.935 41 H 0.073 0.927 42 H 0.027 0.973 43 H 0.070 0.930 44 H 0.348 0.652 45 H 0.042 0.958 46 H 0.085 0.915 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.076 0.924 50 H 0.068 0.932 51 H 0.068 0.932 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.870 15.263 18.318 24.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.183 4.183 3 C 0.013 3.987 4 H 0.103 0.897 5 O -0.276 6.276 6 C -0.076 4.076 7 C 0.302 3.698 8 O -0.400 6.400 9 N -0.344 5.344 10 C -0.025 4.025 11 C -0.162 4.162 12 C -0.102 4.102 13 C -0.066 4.066 14 N -0.300 5.300 15 C -0.082 4.082 16 C 0.226 3.774 17 O -0.468 6.468 18 N -0.201 5.201 19 C -0.429 4.429 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.543 5.543 23 Si 0.757 3.243 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.207 1.207 27 C -0.168 4.168 28 C -0.008 4.008 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.097 0.903 33 H 0.104 0.896 34 H 0.107 0.893 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.103 0.897 38 H 0.091 0.909 39 H 0.116 0.884 40 H 0.084 0.916 41 H 0.091 0.909 42 H 0.045 0.955 43 H 0.089 0.911 44 H 0.167 0.833 45 H 0.060 0.940 46 H 0.103 0.897 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.094 0.906 50 H 0.087 0.913 51 H 0.086 0.914 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.413 15.637 18.874 24.904 hybrid contribution 0.746 -0.609 -1.213 1.548 sum -3.667 15.027 17.661 23.478 Atomic orbital electron populations 1.21907 0.94643 1.02720 1.02032 1.22107 0.97254 0.94727 1.04235 1.22039 0.92296 0.95480 0.88923 0.89671 1.88030 1.41662 1.67165 1.30733 1.23090 0.86737 0.94980 1.02764 1.20472 0.90006 0.77133 0.82204 1.90700 1.64249 1.46468 1.38596 1.48101 1.07350 1.67562 1.11401 1.21935 0.95019 0.97984 0.87558 1.21850 0.96364 0.95181 1.02814 1.21110 0.95401 0.97348 0.96320 1.22003 0.95931 0.96735 0.91963 1.60060 1.62161 1.03705 1.04042 1.21660 0.97736 0.92523 0.96269 1.19819 0.86399 0.84308 0.86836 1.90515 1.42868 1.42416 1.71031 1.41879 1.44695 1.15260 1.18248 1.19752 1.26793 1.02120 0.94199 0.87861 1.25271 0.97333 0.95312 1.00092 1.69617 1.38562 1.06823 1.39281 0.85800 0.78821 0.78443 0.81274 1.19215 1.20775 1.20742 1.21953 1.00536 0.96820 0.97450 1.21583 0.79512 0.96994 1.02684 0.91930 0.92494 0.91704 0.90319 0.89623 0.89293 0.93895 0.92990 0.89654 0.90898 0.88403 0.91639 0.90872 0.95473 0.91127 0.83280 0.93984 0.89692 0.77470 0.91914 0.90586 0.91307 0.91397 0.89057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.97 8.79 37.16 0.33 -0.64 16 2 C -0.15 -1.13 5.20 -26.73 -0.14 -1.27 16 3 C 0.07 0.68 1.85 -27.88 -0.05 0.62 16 4 H 0.09 0.59 6.76 -51.93 -0.35 0.24 16 5 O -0.36 -3.85 9.78 -54.97 -0.54 -4.39 16 6 C 0.02 0.14 10.48 101.05 1.06 1.20 16 7 C 0.51 5.99 7.05 -10.99 -0.08 5.91 16 8 O -0.52 -8.24 15.96 -14.18 -0.23 -8.47 16 9 N -0.61 -5.74 2.98 -173.04 -0.52 -6.25 16 10 C 0.10 0.75 5.46 -3.94 -0.02 0.73 16 11 C -0.12 -1.11 5.10 -26.83 -0.14 -1.25 16 12 C -0.08 -0.75 2.29 -90.58 -0.21 -0.96 16 13 C 0.06 0.69 5.07 -3.83 -0.02 0.67 16 14 N -0.67 -9.80 5.55 -115.06 -0.64 -10.44 16 15 C 0.05 0.86 6.17 -4.98 -0.03 0.83 16 16 C 0.44 10.12 7.82 -10.98 -0.09 10.03 16 17 O -0.58 -15.38 15.78 5.55 0.09 -15.29 16 18 N -0.56 -14.07 5.29 -10.96 -0.06 -14.12 16 19 C -0.30 -8.24 9.68 -14.93 -0.14 -8.38 16 20 H 0.10 2.99 7.16 -52.48 -0.38 2.61 16 21 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 22 N -0.90 -24.29 13.05 55.50 0.72 -23.57 16 23 Si 0.93 20.79 29.55 -169.99 -5.02 15.76 16 24 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 25 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 26 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 27 C -0.13 -1.05 5.36 -26.61 -0.14 -1.20 16 28 C 0.11 1.02 6.42 -3.72 -0.02 1.00 16 29 H 0.06 0.39 6.12 -51.93 -0.32 0.07 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.09 0.62 5.34 -51.93 -0.28 0.34 16 34 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.04 0.24 7.97 -51.93 -0.41 -0.17 16 36 H 0.05 0.27 5.37 -51.93 -0.28 -0.01 16 37 H 0.09 0.54 4.60 -51.93 -0.24 0.30 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.10 1.05 7.72 -51.93 -0.40 0.64 16 40 H 0.06 0.60 7.55 -51.93 -0.39 0.21 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.03 0.29 8.14 -51.93 -0.42 -0.14 16 43 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.35 5.31 8.43 -39.29 -0.33 4.98 16 45 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 47 H 0.39 9.36 7.90 -40.82 -0.32 9.04 16 48 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 49 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 50 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 51 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 52 H 0.09 0.94 7.03 -51.93 -0.37 0.57 16 LS Contribution 407.62 15.07 6.14 6.14 Total: -1.00 -33.76 407.62 -8.53 -42.30 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: -8.70 Total: 10.56 kcal Atomic # 6 Polarization: 7.56 SS G_CDS: 0.21 Total: 7.77 kcal Atomic # 7 Polarization: -53.90 SS G_CDS: -0.49 Total: -54.38 kcal Atomic # 8 Polarization: -27.47 SS G_CDS: -0.68 Total: -28.15 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -33.76 -8.53 -42.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204710214.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.995 kcal (2) G-P(sol) polarization free energy of solvation -33.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds