Wall clock time and date at job start Wed Apr 1 2020 00:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47013 * 2 1 4 4 H 1.09000 * 109.46676 * 305.51649 * 3 2 1 5 5 O 1.42902 * 109.47021 * 65.51778 * 3 2 1 6 6 C 1.42902 * 113.99802 * 264.75173 * 5 3 2 7 7 C 1.50697 * 109.46893 * 185.51870 * 3 2 1 8 8 O 1.21285 * 119.99981 * 249.27384 * 7 3 2 9 9 N 1.34773 * 120.00525 * 69.28038 * 7 3 2 10 10 C 1.46924 * 120.62713 * 4.13308 * 9 7 3 11 11 C 1.52757 * 109.01166 * 233.58761 * 10 9 7 12 12 C 1.53050 * 109.38124 * 305.58956 * 11 10 9 13 13 C 1.52997 * 109.44915 * 181.25168 * 12 11 10 14 14 N 1.46899 * 109.47408 * 64.93816 * 13 12 11 15 15 C 1.46894 * 111.00522 * 180.02562 * 14 13 12 16 16 C 1.50701 * 109.47464 * 180.02562 * 15 14 13 17 17 O 1.21291 * 119.99822 * 359.97438 * 16 15 14 18 18 N 1.34777 * 120.00005 * 180.02562 * 16 15 14 19 19 C 1.37095 * 119.99860 * 179.97438 * 18 16 15 20 20 H 1.08006 * 120.00331 * 359.97438 * 19 18 16 21 21 C 1.38954 * 119.99999 * 180.02562 * 19 18 16 22 22 N 1.31407 * 119.99929 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99924 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47177 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47475 * 119.99647 * 23 21 19 26 26 H 1.48505 * 109.46739 * 239.99649 * 23 21 19 27 27 C 1.53039 * 109.53552 * 61.23646 * 12 11 10 28 28 C 1.46920 * 120.63568 * 184.41595 * 9 7 3 29 29 H 1.09003 * 109.47008 * 294.29021 * 1 2 3 30 30 H 1.08999 * 109.47413 * 54.29286 * 1 2 3 31 31 H 1.09002 * 109.46965 * 174.29495 * 1 2 3 32 32 H 1.08996 * 109.47112 * 120.00274 * 2 1 3 33 33 H 1.09005 * 109.47036 * 240.00032 * 2 1 3 34 34 H 1.09003 * 109.47019 * 185.25505 * 6 5 3 35 35 H 1.08994 * 109.47018 * 305.25631 * 6 5 3 36 36 H 1.08999 * 109.46891 * 65.25987 * 6 5 3 37 37 H 1.09003 * 109.58928 * 353.42252 * 10 9 7 38 38 H 1.09004 * 109.58808 * 113.84375 * 10 9 7 39 39 H 1.09004 * 109.56947 * 185.55573 * 11 10 9 40 40 H 1.08997 * 109.36377 * 65.49603 * 11 10 9 41 41 H 1.08993 * 109.45697 * 301.21582 * 12 11 10 42 42 H 1.08999 * 109.47347 * 184.93474 * 13 12 11 43 43 H 1.08998 * 109.47132 * 304.93880 * 13 12 11 44 44 H 1.00900 * 110.99873 * 56.04268 * 14 13 12 45 45 H 1.09003 * 109.46753 * 300.00215 * 15 14 13 46 46 H 1.09000 * 109.47196 * 59.99446 * 15 14 13 47 47 H 0.96998 * 120.00356 * 359.97438 * 18 16 15 48 48 H 0.97001 * 120.00323 * 180.02562 * 22 21 19 49 49 H 1.09005 * 109.49425 * 178.68150 * 27 12 11 50 50 H 1.08997 * 109.52323 * 58.60902 * 27 12 11 51 51 H 1.09000 * 109.59088 * 246.15955 * 28 9 7 52 52 H 1.09004 * 109.58499 * 6.43655 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5981 1.9840 -0.8365 5 8 1.6723 2.0777 1.2262 6 6 0.4604 2.8310 1.1499 7 6 3.5407 1.4447 -0.1366 8 8 4.2343 1.7856 0.7981 9 7 4.1123 1.0679 -1.2975 10 6 3.2857 0.7393 -2.4669 11 6 3.6736 -0.6475 -2.9766 12 6 5.1806 -0.6886 -3.2402 13 6 5.5660 -2.0672 -3.7803 14 7 4.9350 -2.2736 -5.0907 15 6 5.2829 -3.5904 -5.6411 16 6 4.6195 -3.7654 -6.9828 17 8 3.9247 -2.8804 -7.4358 18 7 4.7974 -4.9057 -7.6789 19 6 4.1934 -5.0651 -8.8993 20 1 3.5746 -4.2770 -9.3027 21 6 4.3763 -6.2409 -9.6168 22 7 5.1287 -7.1999 -9.1258 23 14 3.5539 -6.4577 -11.2799 24 1 2.7667 -5.2413 -11.6053 25 1 4.5911 -6.6698 -12.3212 26 1 2.6495 -7.6348 -11.2351 27 6 5.9357 -0.4226 -1.9359 28 6 5.5736 0.9721 -1.4161 29 1 -0.3633 0.4228 0.9367 30 1 -0.3634 0.5998 -0.8344 31 1 -0.3633 -1.0226 -0.1022 32 1 1.8933 -0.5139 0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 0.2995 3.3567 2.0911 35 1 0.5326 3.5542 0.3376 36 1 -0.3754 2.1568 0.9629 37 1 2.2333 0.7414 -2.1827 38 1 3.4555 1.4751 -3.2529 39 1 3.1366 -0.8601 -3.9011 40 1 3.4153 -1.3939 -2.2254 41 1 5.4419 0.0746 -3.9731 42 1 6.6493 -2.1265 -3.8854 43 1 5.2254 -2.8369 -3.0878 44 1 5.1842 -1.5359 -5.7323 45 1 6.3643 -3.6606 -5.7589 46 1 4.9402 -4.3704 -4.9613 47 1 5.3527 -5.6136 -7.3165 48 1 5.2567 -8.0206 -9.6267 49 1 7.0089 -0.4752 -2.1196 50 1 5.6566 -1.1711 -1.1943 51 1 5.9339 1.7273 -2.1146 52 1 6.0306 1.1304 -0.4392 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204710214.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:50:07 Heat of formation + Delta-G solvation = -146.163293 kcal Electronic energy + Delta-G solvation = -30228.026722 eV Core-core repulsion = 26033.300437 eV Total energy + Delta-G solvation = -4194.726286 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.61068 -40.15957 -39.39436 -38.44640 -36.73773 -35.85593 -34.63199 -33.59726 -33.19341 -32.04785 -29.81670 -29.03335 -27.35281 -26.50866 -25.39475 -24.23666 -23.48458 -22.73813 -21.69292 -21.03116 -20.07561 -19.83053 -18.67188 -17.84784 -17.73932 -16.98106 -16.87582 -16.62225 -16.46470 -16.02009 -15.96252 -15.55387 -15.41631 -15.35370 -15.21517 -14.98155 -14.51151 -14.28677 -14.09888 -14.00236 -13.81667 -13.48610 -13.42572 -13.25326 -13.11956 -12.93050 -12.90328 -12.75115 -12.66514 -12.39127 -12.30530 -12.14494 -12.10522 -11.81633 -11.70285 -11.50559 -11.45801 -11.39957 -10.92617 -10.38253 -10.31652 -9.99891 -9.70378 -9.25539 -8.45627 -5.94116 1.37651 1.43066 1.46122 1.57057 1.75035 2.07496 2.30111 2.87231 2.95617 3.22081 3.40099 3.55875 3.74401 3.80185 3.82332 3.89008 4.01880 4.15678 4.25514 4.32183 4.34700 4.39246 4.43024 4.49076 4.51429 4.53338 4.56762 4.58427 4.68625 4.73327 4.78650 4.81439 4.83561 4.91032 4.99027 5.02951 5.05140 5.11241 5.15161 5.31348 5.35619 5.42481 5.49942 5.58835 5.91893 6.04521 6.13673 6.34072 6.47203 6.61551 7.07772 7.14199 7.58458 8.13305 8.71978 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.019140 B = 0.001845 C = 0.001738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.559954 B =15171.465654 C =16107.770646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.140 4.140 3 C 0.076 3.924 4 H 0.110 0.890 5 O -0.391 6.391 6 C 0.014 3.986 7 C 0.508 3.492 8 O -0.576 6.576 9 N -0.603 5.603 10 C 0.099 3.901 11 C -0.119 4.119 12 C -0.077 4.077 13 C 0.067 3.933 14 N -0.676 5.676 15 C 0.065 3.935 16 C 0.439 3.561 17 O -0.621 6.621 18 N -0.575 5.575 19 C -0.332 4.332 20 H 0.080 0.920 21 C -0.015 4.015 22 N -0.921 5.921 23 Si 0.993 3.007 24 H -0.272 1.272 25 H -0.272 1.272 26 H -0.272 1.272 27 C -0.118 4.118 28 C 0.111 3.889 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.054 0.946 36 H 0.067 0.933 37 H 0.102 0.898 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.062 0.938 41 H 0.077 0.923 42 H 0.039 0.961 43 H 0.072 0.928 44 H 0.344 0.656 45 H 0.063 0.937 46 H 0.101 0.899 47 H 0.396 0.604 48 H 0.277 0.723 49 H 0.090 0.910 50 H 0.062 0.938 51 H 0.081 0.919 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.317 15.339 17.919 23.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.178 4.178 3 C 0.015 3.985 4 H 0.128 0.872 5 O -0.310 6.310 6 C -0.082 4.082 7 C 0.296 3.704 8 O -0.455 6.455 9 N -0.337 5.337 10 C -0.023 4.023 11 C -0.157 4.157 12 C -0.096 4.096 13 C -0.062 4.062 14 N -0.308 5.308 15 C -0.067 4.067 16 C 0.227 3.773 17 O -0.507 6.507 18 N -0.213 5.213 19 C -0.461 4.461 20 H 0.098 0.902 21 C -0.214 4.214 22 N -0.562 5.562 23 Si 0.817 3.183 24 H -0.197 1.197 25 H -0.197 1.197 26 H -0.197 1.197 27 C -0.157 4.157 28 C -0.011 4.011 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.109 0.891 34 H 0.113 0.887 35 H 0.072 0.928 36 H 0.086 0.914 37 H 0.120 0.880 38 H 0.103 0.897 39 H 0.102 0.898 40 H 0.081 0.919 41 H 0.095 0.905 42 H 0.057 0.943 43 H 0.091 0.909 44 H 0.163 0.837 45 H 0.081 0.919 46 H 0.119 0.881 47 H 0.230 0.770 48 H 0.086 0.914 49 H 0.108 0.892 50 H 0.080 0.920 51 H 0.099 0.901 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.853 15.695 18.472 24.721 hybrid contribution 0.897 -0.592 -1.055 1.505 sum -3.957 15.104 17.418 23.391 Atomic orbital electron populations 1.21901 0.93181 1.03278 1.02677 1.22068 0.98450 0.93728 1.03571 1.22131 0.90585 0.96435 0.89393 0.87215 1.87992 1.43367 1.67829 1.31765 1.23291 0.85872 0.95328 1.03660 1.21039 0.91093 0.76334 0.81937 1.90669 1.65501 1.49013 1.40309 1.48188 1.07773 1.66371 1.11325 1.22041 0.95652 0.97506 0.87075 1.21766 0.96152 0.95827 1.01984 1.21062 0.95544 0.96377 0.96640 1.22052 0.96368 0.97835 0.89946 1.60058 1.63138 1.02469 1.05160 1.21512 0.98161 0.94299 0.92772 1.20895 0.85246 0.82867 0.88330 1.90484 1.44358 1.43420 1.72457 1.41961 1.45109 1.16183 1.18027 1.19707 1.28104 1.02362 0.95952 0.90209 1.26043 0.97575 0.94611 1.03202 1.69676 1.38949 1.07127 1.40492 0.84872 0.78057 0.78235 0.77184 1.19668 1.19710 1.19732 1.21855 1.01252 0.95980 0.96582 1.21639 0.79350 0.97900 1.02189 0.91976 0.90961 0.91389 0.92198 0.89064 0.88724 0.92780 0.91419 0.88036 0.89712 0.89833 0.91926 0.90478 0.94325 0.90930 0.83716 0.91900 0.88101 0.77048 0.91369 0.89176 0.91961 0.90082 0.90679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 8.79 71.98 0.63 -0.99 16 2 C -0.14 -2.04 5.20 30.59 0.16 -1.88 16 3 C 0.08 1.30 1.85 29.85 0.06 1.36 16 4 H 0.11 1.28 6.76 -2.39 -0.02 1.27 16 5 O -0.39 -8.24 9.78 -130.11 -1.27 -9.51 16 6 C 0.01 0.17 10.48 113.37 1.19 1.36 16 7 C 0.51 11.69 7.05 87.66 0.62 12.31 16 8 O -0.58 -18.64 15.96 15.83 0.25 -18.39 16 9 N -0.60 -10.73 2.98 -819.76 -2.44 -13.17 16 10 C 0.10 1.33 5.46 86.22 0.47 1.80 16 11 C -0.12 -1.93 5.10 30.53 0.16 -1.78 16 12 C -0.08 -1.24 2.29 -10.76 -0.02 -1.27 16 13 C 0.07 1.31 5.07 86.30 0.44 1.75 16 14 N -0.68 -18.74 5.55 -517.95 -2.88 -21.61 16 15 C 0.07 2.09 6.17 85.56 0.53 2.61 16 16 C 0.44 20.10 7.82 87.66 0.69 20.78 16 17 O -0.62 -33.03 15.78 -3.06 -0.05 -33.08 16 18 N -0.58 -28.88 5.29 -306.98 -1.62 -30.50 16 19 C -0.33 -18.52 9.68 84.04 0.81 -17.71 16 20 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 21 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 22 N -0.92 -49.17 13.05 21.66 0.28 -48.89 16 23 Si 0.99 42.29 29.55 68.60 2.03 44.32 16 24 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 25 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 26 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 27 C -0.12 -1.73 5.36 30.67 0.16 -1.56 16 28 C 0.11 1.88 6.42 86.36 0.55 2.44 16 29 H 0.06 0.67 6.12 -2.39 -0.01 0.65 16 30 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.09 1.19 5.34 -2.38 -0.01 1.18 16 34 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.05 0.52 7.97 -2.39 -0.02 0.50 16 36 H 0.07 0.58 5.37 -2.39 -0.01 0.57 16 37 H 0.10 1.04 4.60 -2.39 -0.01 1.03 16 38 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.08 1.66 7.72 -2.38 -0.02 1.64 16 40 H 0.06 1.06 7.55 -2.39 -0.02 1.04 16 41 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.34 10.06 8.43 -89.69 -0.76 9.30 16 45 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 46 H 0.10 2.95 8.14 -2.39 -0.02 2.94 16 47 H 0.40 18.91 7.90 -92.71 -0.73 18.18 16 48 H 0.28 13.81 8.31 -92.71 -0.77 13.04 16 49 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 50 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 51 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 52 H 0.07 1.56 7.03 -2.39 -0.02 1.54 16 Total: -1.00 -74.24 407.62 0.66 -73.59 By element: Atomic # 1 Polarization: 38.89 SS G_CDS: -0.55 Total: 38.34 kcal Atomic # 6 Polarization: 12.00 SS G_CDS: 6.91 Total: 18.90 kcal Atomic # 7 Polarization: -107.52 SS G_CDS: -6.66 Total: -114.17 kcal Atomic # 8 Polarization: -59.91 SS G_CDS: -1.07 Total: -60.97 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Total: -74.24 0.66 -73.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204710214.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.577 kcal (2) G-P(sol) polarization free energy of solvation -74.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds