Wall clock time and date at job start Wed Apr 1 2020 00:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42899 * 109.47336 * 2 1 4 4 C 1.42902 * 113.99960 * 178.89902 * 3 2 1 5 5 H 1.09001 * 109.46803 * 19.40280 * 4 3 2 6 6 C 1.52998 * 109.47068 * 259.40129 * 4 3 2 7 7 C 1.53002 * 109.47018 * 65.49864 * 6 4 3 8 8 C 1.50699 * 109.46677 * 139.40226 * 4 3 2 9 9 O 1.21275 * 120.00571 * 4.99853 * 8 4 3 10 10 N 1.34780 * 119.99637 * 184.99840 * 8 4 3 11 11 C 1.46925 * 120.63221 * 0.02562 * 10 8 4 12 12 C 1.53196 * 108.77699 * 126.40767 * 11 10 8 13 13 C 1.53042 * 109.31034 * 54.63714 * 12 11 10 14 14 C 1.53039 * 109.53636 * 298.63075 * 13 12 11 15 15 H 1.08997 * 109.49893 * 301.41705 * 14 13 12 16 16 N 1.46904 * 109.52427 * 181.33411 * 14 13 12 17 17 C 1.46890 * 110.99956 * 85.14516 * 16 14 13 18 18 C 1.50699 * 109.47211 * 180.02562 * 17 16 14 19 19 O 1.21295 * 119.99875 * 0.02562 * 18 17 16 20 20 N 1.34779 * 120.00125 * 180.02562 * 18 17 16 21 21 C 1.37102 * 120.00014 * 180.02562 * 20 18 17 22 22 H 1.07999 * 120.00106 * 359.97438 * 21 20 18 23 23 C 1.38952 * 119.99941 * 179.97438 * 21 20 18 24 24 N 1.31408 * 119.99861 * 179.97438 * 23 21 20 25 25 Si 1.86801 * 119.99981 * 359.97438 * 23 21 20 26 26 H 1.48493 * 109.47083 * 90.00039 * 25 23 21 27 27 H 1.48497 * 109.46986 * 210.00418 * 25 23 21 28 28 H 1.48503 * 109.46948 * 329.99763 * 25 23 21 29 29 C 1.46921 * 120.63123 * 180.02562 * 10 8 4 30 30 H 1.09003 * 109.46695 * 59.99696 * 1 2 3 31 31 H 1.08995 * 109.47126 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47184 * 299.99605 * 1 2 3 33 33 H 1.09005 * 109.46560 * 240.00091 * 2 1 3 34 34 H 1.08999 * 109.47091 * 120.00599 * 2 1 3 35 35 H 1.09006 * 109.46720 * 185.49295 * 6 4 3 36 36 H 1.08992 * 109.47500 * 305.49776 * 6 4 3 37 37 H 1.08997 * 109.47381 * 297.87652 * 7 6 4 38 38 H 1.09003 * 109.46913 * 57.88218 * 7 6 4 39 39 H 1.09003 * 109.46861 * 177.87441 * 7 6 4 40 40 H 1.09007 * 109.58794 * 6.62191 * 11 10 8 41 41 H 1.08998 * 109.70296 * 246.26635 * 11 10 8 42 42 H 1.09006 * 109.49520 * 174.58639 * 12 11 10 43 43 H 1.08998 * 109.49947 * 294.68541 * 12 11 10 44 44 H 1.08999 * 109.46136 * 58.65351 * 13 12 11 45 45 H 1.08994 * 109.46012 * 178.61101 * 13 12 11 46 46 H 1.00903 * 110.99474 * 321.19446 * 16 14 13 47 47 H 1.09000 * 109.47493 * 300.00135 * 17 16 14 48 48 H 1.08998 * 109.47305 * 60.00197 * 17 16 14 49 49 H 0.96996 * 119.99915 * 359.97438 * 20 18 17 50 50 H 0.96995 * 120.00160 * 180.02562 * 24 23 21 51 51 H 1.09004 * 109.58732 * 353.37374 * 29 10 8 52 52 H 1.09000 * 109.59055 * 113.80348 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4307 1.4601 0.0251 5 1 3.8754 0.5203 -0.3023 6 6 3.8924 1.7739 1.4496 7 6 3.5751 0.5872 2.3617 8 6 3.8630 2.5693 -0.8990 9 8 3.0310 3.2600 -1.4481 10 7 5.1743 2.7936 -1.1151 11 6 6.1939 1.9650 -0.4576 12 6 7.1341 1.3992 -1.5267 13 6 7.7016 2.5495 -2.3616 14 6 6.5580 3.2847 -3.0642 15 1 6.0106 2.5859 -3.6968 16 7 7.1056 4.3688 -3.8906 17 6 7.5086 3.8708 -5.2125 18 6 8.0648 5.0083 -6.0297 19 8 8.1203 6.1241 -5.5571 20 7 8.5003 4.7859 -7.2856 21 6 9.0068 5.8207 -8.0288 22 1 9.0563 6.8142 -7.6081 23 6 9.4563 5.5913 -9.3235 24 7 9.9413 6.5833 -10.0360 25 14 9.3714 3.8729 -10.0509 26 1 8.0672 3.6897 -10.7370 27 1 10.4746 3.6943 -11.0288 28 1 9.5050 2.8686 -8.9652 29 6 5.6113 3.8715 -2.0128 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8932 -0.5139 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 4.9671 1.9562 1.4513 36 1 3.3729 2.6605 1.8129 37 1 2.4971 0.4284 2.3896 38 1 4.0643 -0.3077 1.9770 39 1 3.9379 0.7954 3.3682 40 1 5.7111 1.1455 0.0750 41 1 6.7636 2.5724 0.2456 42 1 7.9510 0.8616 -1.0452 43 1 6.5813 0.7183 -2.1739 44 1 8.2332 3.2431 -1.7102 45 1 8.3900 2.1518 -3.1072 46 1 7.8765 4.8240 -3.4252 47 1 8.2721 3.1019 -5.0939 48 1 6.6424 3.4473 -5.7208 49 1 8.4562 3.8936 -7.6633 50 1 10.2548 6.4233 -10.9399 51 1 4.7440 4.3101 -2.5064 52 1 6.1330 4.6368 -1.4381 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207574601.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:52:35 Heat of formation + Delta-G solvation = -112.134294 kcal Electronic energy + Delta-G solvation = -30450.454513 eV Core-core repulsion = 26257.203836 eV Total energy + Delta-G solvation = -4193.250677 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.83020 -38.98638 -38.32519 -37.47931 -35.42887 -34.10525 -33.79008 -32.37752 -31.66954 -31.45670 -30.36860 -27.85142 -26.41409 -25.37855 -23.85482 -23.17018 -22.75936 -22.28791 -20.97952 -19.66965 -19.28321 -18.33797 -17.81356 -17.23232 -16.37076 -16.24598 -15.92711 -15.56839 -15.19030 -15.01745 -14.79986 -14.57125 -14.47882 -14.26118 -13.96700 -13.82432 -13.67411 -13.23428 -13.09082 -12.92783 -12.78601 -12.68259 -12.65331 -12.46592 -12.34031 -12.04543 -12.00379 -11.80376 -11.64119 -11.52211 -11.36231 -11.25693 -11.18087 -11.05368 -10.86738 -10.59991 -10.23926 -9.97586 -9.58662 -9.57281 -8.98181 -8.56614 -8.19423 -8.13614 -6.30842 -3.82246 2.36286 2.42583 3.01678 3.07045 3.14797 3.37397 3.73583 4.04608 4.06749 4.10620 4.31102 4.36219 4.47062 4.51281 4.55149 4.64228 4.72283 4.77964 4.80561 4.91231 4.94342 4.98760 5.02140 5.10339 5.16212 5.22138 5.25005 5.28650 5.41529 5.42496 5.52326 5.52406 5.56597 5.58778 5.63340 5.70390 5.74050 5.77554 5.81836 5.89647 6.00497 6.03282 6.19312 6.70638 7.04257 7.14021 7.53767 7.58393 7.96567 8.14713 8.59811 8.95183 9.42516 9.82600 10.82286 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.019751 B = 0.001977 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.328220 B =14156.808951 C =14558.103964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.050 3.950 3 O -0.354 6.354 4 C 0.077 3.923 5 H 0.085 0.915 6 C -0.146 4.146 7 C -0.154 4.154 8 C 0.511 3.489 9 O -0.514 6.514 10 N -0.610 5.610 11 C 0.099 3.901 12 C -0.131 4.131 13 C -0.154 4.154 14 C 0.076 3.924 15 H 0.080 0.920 16 N -0.660 5.660 17 C 0.050 3.950 18 C 0.450 3.550 19 O -0.564 6.564 20 N -0.591 5.591 21 C -0.305 4.305 22 H 0.120 0.880 23 C 0.041 3.959 24 N -0.881 5.881 25 Si 0.880 3.120 26 H -0.270 1.270 27 H -0.277 1.277 28 H -0.270 1.270 29 C 0.124 3.876 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.048 0.952 34 H 0.054 0.946 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.062 0.938 38 H 0.054 0.946 39 H 0.062 0.938 40 H 0.086 0.914 41 H 0.074 0.926 42 H 0.077 0.923 43 H 0.067 0.933 44 H 0.070 0.930 45 H 0.068 0.932 46 H 0.353 0.647 47 H 0.045 0.955 48 H 0.087 0.913 49 H 0.370 0.630 50 H 0.273 0.727 51 H 0.102 0.898 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.405 -20.995 25.035 34.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.027 4.027 3 O -0.272 6.272 4 C 0.015 3.985 5 H 0.103 0.897 6 C -0.184 4.184 7 C -0.212 4.212 8 C 0.297 3.703 9 O -0.388 6.388 10 N -0.346 5.346 11 C -0.023 4.023 12 C -0.170 4.170 13 C -0.193 4.193 14 C -0.035 4.035 15 H 0.098 0.902 16 N -0.292 5.292 17 C -0.082 4.082 18 C 0.235 3.765 19 O -0.445 6.445 20 N -0.230 5.230 21 C -0.433 4.433 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.521 5.521 25 Si 0.707 3.293 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.196 1.196 29 C 0.002 3.998 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.104 0.896 41 H 0.092 0.908 42 H 0.095 0.905 43 H 0.086 0.914 44 H 0.088 0.912 45 H 0.087 0.913 46 H 0.173 0.827 47 H 0.063 0.937 48 H 0.105 0.895 49 H 0.203 0.797 50 H 0.084 0.916 51 H 0.120 0.880 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.498 -19.370 24.612 33.364 hybrid contribution 1.198 -2.153 -0.626 2.542 sum -10.300 -21.523 23.986 33.833 Atomic orbital electron populations 1.21729 0.93363 1.02241 1.03515 1.22742 0.96116 0.83605 1.00197 1.88058 1.18098 1.26305 1.94742 1.21933 0.83947 0.97580 0.95027 0.89684 1.22140 1.02258 1.00621 0.93358 1.21854 1.02318 0.97373 0.99611 1.20540 0.82063 0.85436 0.82238 1.90743 1.50971 1.47959 1.49088 1.48052 1.05052 1.34632 1.46863 1.21970 0.90340 0.94813 0.95221 1.21889 0.99091 0.98172 0.97864 1.22344 0.98958 0.98153 0.99866 1.21897 0.94997 0.92467 0.94161 0.90188 1.59971 1.39827 1.26827 1.02573 1.21720 0.99713 0.96034 0.90780 1.19693 0.84010 0.89848 0.82914 1.90572 1.58800 1.24189 1.70971 1.42203 1.57266 1.10408 1.13127 1.19436 1.36995 0.91614 0.95294 0.86257 1.25044 0.97247 0.97769 0.96146 1.69619 1.40993 1.30913 1.10570 0.86666 0.78920 0.83981 0.79769 1.19579 1.20198 1.19587 1.21535 0.99564 0.88097 0.90604 0.91540 0.91021 0.91751 0.93355 0.92760 0.89804 0.90184 0.91893 0.92663 0.91902 0.89566 0.90754 0.90454 0.91386 0.91154 0.91348 0.82667 0.93714 0.89461 0.79718 0.91616 0.88017 0.90989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 10.28 37.16 0.38 -0.60 16 2 C 0.05 0.36 6.03 37.16 0.22 0.58 16 3 O -0.35 -3.77 9.30 -55.09 -0.51 -4.28 16 4 C 0.08 0.66 1.85 -27.88 -0.05 0.61 16 5 H 0.09 0.54 6.98 -51.93 -0.36 0.17 16 6 C -0.15 -0.93 5.17 -26.73 -0.14 -1.07 16 7 C -0.15 -0.71 8.94 37.16 0.33 -0.38 16 8 C 0.51 6.16 7.12 -10.98 -0.08 6.09 16 9 O -0.51 -8.74 15.92 -14.30 -0.23 -8.96 16 10 N -0.61 -6.04 2.97 -172.78 -0.51 -6.55 16 11 C 0.10 0.61 4.89 -3.71 -0.02 0.59 16 12 C -0.13 -0.83 6.08 -26.61 -0.16 -0.99 16 13 C -0.15 -1.35 5.14 -26.69 -0.14 -1.48 16 14 C 0.08 0.88 2.62 -67.60 -0.18 0.70 16 15 H 0.08 0.97 7.80 -51.93 -0.41 0.56 16 16 N -0.66 -10.00 5.88 -107.88 -0.63 -10.64 16 17 C 0.05 0.82 5.97 -4.98 -0.03 0.79 16 18 C 0.45 10.22 7.82 -10.98 -0.09 10.13 16 19 O -0.56 -15.18 15.78 5.54 0.09 -15.10 16 20 N -0.59 -14.12 5.09 -10.96 -0.06 -14.18 16 21 C -0.30 -8.67 10.16 -14.93 -0.15 -8.82 16 22 H 0.12 3.88 7.39 -52.49 -0.39 3.50 16 23 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 24 N -0.88 -25.86 13.96 55.50 0.77 -25.09 16 25 Si 0.88 19.43 27.74 -169.99 -4.71 14.72 16 26 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 27 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 28 H -0.27 -5.41 6.52 56.52 0.37 -5.04 16 29 C 0.12 1.48 6.04 -3.72 -0.02 1.46 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.05 0.32 8.13 -51.93 -0.42 -0.10 16 34 H 0.05 0.28 5.87 -51.93 -0.30 -0.02 16 35 H 0.08 0.41 5.44 -51.93 -0.28 0.13 16 36 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.33 6.35 -51.93 -0.33 0.00 16 38 H 0.05 0.19 8.14 -51.93 -0.42 -0.23 16 39 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 40 H 0.09 0.36 4.75 -51.93 -0.25 0.12 16 41 H 0.07 0.39 8.13 -51.93 -0.42 -0.03 16 42 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.07 0.63 7.44 -51.93 -0.39 0.24 16 46 H 0.35 5.43 8.18 -39.29 -0.32 5.11 16 47 H 0.04 0.63 7.43 -51.93 -0.39 0.24 16 48 H 0.09 1.32 8.06 -51.93 -0.42 0.90 16 49 H 0.37 7.76 5.76 -40.82 -0.24 7.52 16 50 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 51 H 0.10 1.52 7.01 -51.93 -0.36 1.15 16 52 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 405.41 15.07 6.11 6.11 Total: -1.00 -36.11 405.41 -8.57 -44.67 By element: Atomic # 1 Polarization: 19.31 SS G_CDS: -8.67 Total: 10.64 kcal Atomic # 6 Polarization: 8.86 SS G_CDS: -0.21 Total: 8.65 kcal Atomic # 7 Polarization: -56.02 SS G_CDS: -0.43 Total: -56.45 kcal Atomic # 8 Polarization: -27.69 SS G_CDS: -0.65 Total: -28.34 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -4.71 Total: 14.72 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -36.11 -8.57 -44.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207574601.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.462 kcal (2) G-P(sol) polarization free energy of solvation -36.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds