Wall clock time and date at job start Wed Apr 1 2020 00:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42899 * 109.47336 * 2 1 4 4 C 1.42902 * 113.99960 * 178.89902 * 3 2 1 5 5 H 1.09001 * 109.46803 * 19.40280 * 4 3 2 6 6 C 1.52998 * 109.47068 * 259.40129 * 4 3 2 7 7 C 1.53002 * 109.47018 * 65.49864 * 6 4 3 8 8 C 1.50699 * 109.46677 * 139.40226 * 4 3 2 9 9 O 1.21275 * 120.00571 * 4.99853 * 8 4 3 10 10 N 1.34780 * 119.99637 * 184.99840 * 8 4 3 11 11 C 1.46925 * 120.63221 * 0.02562 * 10 8 4 12 12 C 1.53196 * 108.77699 * 126.40767 * 11 10 8 13 13 C 1.53042 * 109.31034 * 54.63714 * 12 11 10 14 14 C 1.53039 * 109.53636 * 298.63075 * 13 12 11 15 15 H 1.08997 * 109.49893 * 301.41705 * 14 13 12 16 16 N 1.46904 * 109.52427 * 181.33411 * 14 13 12 17 17 C 1.46890 * 110.99956 * 85.14516 * 16 14 13 18 18 C 1.50699 * 109.47211 * 180.02562 * 17 16 14 19 19 O 1.21295 * 119.99875 * 0.02562 * 18 17 16 20 20 N 1.34779 * 120.00125 * 180.02562 * 18 17 16 21 21 C 1.37102 * 120.00014 * 180.02562 * 20 18 17 22 22 H 1.07999 * 120.00106 * 359.97438 * 21 20 18 23 23 C 1.38952 * 119.99941 * 179.97438 * 21 20 18 24 24 N 1.31408 * 119.99861 * 179.97438 * 23 21 20 25 25 Si 1.86801 * 119.99981 * 359.97438 * 23 21 20 26 26 H 1.48493 * 109.47083 * 90.00039 * 25 23 21 27 27 H 1.48497 * 109.46986 * 210.00418 * 25 23 21 28 28 H 1.48503 * 109.46948 * 329.99763 * 25 23 21 29 29 C 1.46921 * 120.63123 * 180.02562 * 10 8 4 30 30 H 1.09003 * 109.46695 * 59.99696 * 1 2 3 31 31 H 1.08995 * 109.47126 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47184 * 299.99605 * 1 2 3 33 33 H 1.09005 * 109.46560 * 240.00091 * 2 1 3 34 34 H 1.08999 * 109.47091 * 120.00599 * 2 1 3 35 35 H 1.09006 * 109.46720 * 185.49295 * 6 4 3 36 36 H 1.08992 * 109.47500 * 305.49776 * 6 4 3 37 37 H 1.08997 * 109.47381 * 297.87652 * 7 6 4 38 38 H 1.09003 * 109.46913 * 57.88218 * 7 6 4 39 39 H 1.09003 * 109.46861 * 177.87441 * 7 6 4 40 40 H 1.09007 * 109.58794 * 6.62191 * 11 10 8 41 41 H 1.08998 * 109.70296 * 246.26635 * 11 10 8 42 42 H 1.09006 * 109.49520 * 174.58639 * 12 11 10 43 43 H 1.08998 * 109.49947 * 294.68541 * 12 11 10 44 44 H 1.08999 * 109.46136 * 58.65351 * 13 12 11 45 45 H 1.08994 * 109.46012 * 178.61101 * 13 12 11 46 46 H 1.00903 * 110.99474 * 321.19446 * 16 14 13 47 47 H 1.09000 * 109.47493 * 300.00135 * 17 16 14 48 48 H 1.08998 * 109.47305 * 60.00197 * 17 16 14 49 49 H 0.96996 * 119.99915 * 359.97438 * 20 18 17 50 50 H 0.96995 * 120.00160 * 180.02562 * 24 23 21 51 51 H 1.09004 * 109.58732 * 353.37374 * 29 10 8 52 52 H 1.09000 * 109.59055 * 113.80348 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4307 1.4601 0.0251 5 1 3.8754 0.5203 -0.3023 6 6 3.8924 1.7739 1.4496 7 6 3.5751 0.5872 2.3617 8 6 3.8630 2.5693 -0.8990 9 8 3.0310 3.2600 -1.4481 10 7 5.1743 2.7936 -1.1151 11 6 6.1939 1.9650 -0.4576 12 6 7.1341 1.3992 -1.5267 13 6 7.7016 2.5495 -2.3616 14 6 6.5580 3.2847 -3.0642 15 1 6.0106 2.5859 -3.6968 16 7 7.1056 4.3688 -3.8906 17 6 7.5086 3.8708 -5.2125 18 6 8.0648 5.0083 -6.0297 19 8 8.1203 6.1241 -5.5571 20 7 8.5003 4.7859 -7.2856 21 6 9.0068 5.8207 -8.0288 22 1 9.0563 6.8142 -7.6081 23 6 9.4563 5.5913 -9.3235 24 7 9.9413 6.5833 -10.0360 25 14 9.3714 3.8729 -10.0509 26 1 8.0672 3.6897 -10.7370 27 1 10.4746 3.6943 -11.0288 28 1 9.5050 2.8686 -8.9652 29 6 5.6113 3.8715 -2.0128 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8932 -0.5139 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 4.9671 1.9562 1.4513 36 1 3.3729 2.6605 1.8129 37 1 2.4971 0.4284 2.3896 38 1 4.0643 -0.3077 1.9770 39 1 3.9379 0.7954 3.3682 40 1 5.7111 1.1455 0.0750 41 1 6.7636 2.5724 0.2456 42 1 7.9510 0.8616 -1.0452 43 1 6.5813 0.7183 -2.1739 44 1 8.2332 3.2431 -1.7102 45 1 8.3900 2.1518 -3.1072 46 1 7.8765 4.8240 -3.4252 47 1 8.2721 3.1019 -5.0939 48 1 6.6424 3.4473 -5.7208 49 1 8.4562 3.8936 -7.6633 50 1 10.2548 6.4233 -10.9399 51 1 4.7440 4.3101 -2.5064 52 1 6.1330 4.6368 -1.4381 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207574601.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:52:34 Heat of formation + Delta-G solvation = -140.242972 kcal Electronic energy + Delta-G solvation = -30451.673397 eV Core-core repulsion = 26257.203836 eV Total energy + Delta-G solvation = -4194.469561 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.64097 -40.39277 -39.43935 -38.44543 -36.53330 -35.89571 -34.56837 -33.76675 -33.12072 -31.97549 -31.36670 -28.69656 -27.77566 -26.20394 -25.44432 -23.71803 -23.44713 -22.91901 -21.79265 -21.34277 -20.51383 -20.05510 -18.52634 -18.07833 -17.65045 -17.09197 -17.03521 -16.75697 -16.53048 -16.13974 -15.87357 -15.44755 -15.35415 -15.14618 -15.02872 -14.77544 -14.70049 -14.59814 -14.19346 -13.98373 -13.95300 -13.51837 -13.41941 -13.29148 -13.21861 -13.15064 -12.95105 -12.82885 -12.44807 -12.42380 -12.29102 -12.13613 -12.04828 -11.98768 -11.88410 -11.70181 -11.60148 -11.53005 -10.94027 -10.50353 -10.32656 -10.26493 -9.79708 -9.28135 -8.42413 -6.03605 1.28634 1.35122 1.43571 1.48831 1.65681 1.93061 2.22063 2.67457 2.83236 3.13490 3.38101 3.40688 3.74753 3.77592 3.84428 3.86867 3.98196 4.09844 4.13104 4.17421 4.26300 4.29633 4.30053 4.37796 4.47660 4.48330 4.52068 4.53806 4.61125 4.77878 4.79291 4.80723 4.87430 4.88598 5.01460 5.06432 5.07648 5.15272 5.18455 5.27399 5.31716 5.39317 5.41409 5.52028 5.88669 6.01278 6.10316 6.35974 6.38690 6.58053 6.86331 7.10343 7.37664 7.94141 8.75210 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.019751 B = 0.001977 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.328220 B =14156.808951 C =14558.103964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.043 3.957 3 O -0.389 6.389 4 C 0.081 3.919 5 H 0.117 0.883 6 C -0.141 4.141 7 C -0.151 4.151 8 C 0.501 3.499 9 O -0.579 6.579 10 N -0.602 5.602 11 C 0.092 3.908 12 C -0.124 4.124 13 C -0.149 4.149 14 C 0.084 3.916 15 H 0.077 0.923 16 N -0.683 5.683 17 C 0.067 3.933 18 C 0.448 3.552 19 O -0.614 6.614 20 N -0.590 5.590 21 C -0.330 4.330 22 H 0.055 0.945 23 C -0.016 4.016 24 N -0.934 5.934 25 Si 0.966 3.034 26 H -0.260 1.260 27 H -0.274 1.274 28 H -0.229 1.229 29 C 0.127 3.873 30 H 0.045 0.955 31 H 0.095 0.905 32 H 0.059 0.941 33 H 0.054 0.946 34 H 0.080 0.920 35 H 0.103 0.897 36 H 0.056 0.944 37 H 0.053 0.947 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.114 0.886 41 H 0.091 0.909 42 H 0.107 0.893 43 H 0.069 0.931 44 H 0.073 0.927 45 H 0.071 0.929 46 H 0.350 0.650 47 H 0.083 0.917 48 H 0.106 0.894 49 H 0.390 0.610 50 H 0.279 0.721 51 H 0.061 0.939 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.597 -26.504 26.688 38.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.032 4.032 3 O -0.308 6.308 4 C 0.019 3.981 5 H 0.134 0.866 6 C -0.179 4.179 7 C -0.208 4.208 8 C 0.289 3.711 9 O -0.458 6.458 10 N -0.336 5.336 11 C -0.029 4.029 12 C -0.163 4.163 13 C -0.188 4.188 14 C -0.026 4.026 15 H 0.095 0.905 16 N -0.316 5.316 17 C -0.065 4.065 18 C 0.236 3.764 19 O -0.498 6.498 20 N -0.232 5.232 21 C -0.459 4.459 22 H 0.073 0.927 23 C -0.215 4.215 24 N -0.574 5.574 25 Si 0.786 3.214 26 H -0.184 1.184 27 H -0.199 1.199 28 H -0.152 1.152 29 C 0.003 3.997 30 H 0.065 0.935 31 H 0.114 0.886 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.098 0.902 35 H 0.121 0.879 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.095 0.905 39 H 0.090 0.910 40 H 0.132 0.868 41 H 0.109 0.891 42 H 0.125 0.875 43 H 0.087 0.913 44 H 0.092 0.908 45 H 0.090 0.910 46 H 0.169 0.831 47 H 0.101 0.899 48 H 0.124 0.876 49 H 0.225 0.775 50 H 0.089 0.911 51 H 0.080 0.920 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.666 -24.930 26.314 37.785 hybrid contribution 0.928 -0.283 -1.064 1.440 sum -9.738 -25.214 25.250 36.988 Atomic orbital electron populations 1.21774 0.93420 1.03434 1.02315 1.22961 0.96236 0.82405 1.01617 1.88033 1.19335 1.28535 1.94922 1.22072 0.83491 0.97177 0.95314 0.86585 1.22139 1.02975 1.00652 0.92101 1.21845 1.02069 0.97194 0.99695 1.21389 0.82066 0.85650 0.81947 1.90709 1.52813 1.50485 1.51772 1.48129 1.05409 1.34113 1.45970 1.22351 0.89707 0.95350 0.95521 1.21886 0.99788 0.97141 0.97495 1.22283 0.97552 0.98814 1.00161 1.21842 0.95772 0.91407 0.93602 0.90470 1.59898 1.39933 1.28957 1.02778 1.21599 1.01075 0.93562 0.90301 1.20970 0.81938 0.90917 0.82617 1.90550 1.60205 1.27073 1.72007 1.42019 1.57577 1.10171 1.13398 1.19008 1.39446 0.90714 0.96711 0.92724 1.26144 0.95677 1.03848 0.95817 1.69803 1.41909 1.34404 1.11297 0.85352 0.79265 0.77235 0.79583 1.18414 1.19852 1.15232 1.21316 0.98058 0.89102 0.91191 0.93549 0.88599 0.92149 0.92783 0.90245 0.87894 0.92561 0.92764 0.90511 0.90956 0.86786 0.89124 0.87485 0.91266 0.90801 0.91014 0.83052 0.89942 0.87556 0.77459 0.91116 0.92008 0.90845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 10.28 71.98 0.74 -1.11 16 2 C 0.04 0.55 6.03 71.98 0.43 0.98 16 3 O -0.39 -8.09 9.30 -129.99 -1.21 -9.30 16 4 C 0.08 1.25 1.85 29.85 0.06 1.30 16 5 H 0.12 1.02 6.98 -2.39 -0.02 1.01 16 6 C -0.14 -1.47 5.17 30.59 0.16 -1.31 16 7 C -0.15 -0.87 8.94 71.98 0.64 -0.22 16 8 C 0.50 12.02 7.12 87.66 0.62 12.65 16 9 O -0.58 -20.91 15.92 15.98 0.25 -20.66 16 10 N -0.60 -11.14 2.97 -818.94 -2.43 -13.58 16 11 C 0.09 0.77 4.89 86.36 0.42 1.19 16 12 C -0.12 -0.99 6.08 30.67 0.19 -0.80 16 13 C -0.15 -2.09 5.14 30.62 0.16 -1.94 16 14 C 0.08 1.82 2.62 44.98 0.12 1.94 16 15 H 0.08 1.72 7.80 -2.39 -0.02 1.70 16 16 N -0.68 -20.29 5.88 -495.23 -2.91 -23.20 16 17 C 0.07 2.06 5.97 85.56 0.51 2.57 16 18 C 0.45 20.46 7.82 87.66 0.69 21.15 16 19 O -0.61 -34.59 15.78 -3.07 -0.05 -34.64 16 20 N -0.59 -28.09 5.09 -306.98 -1.56 -29.66 16 21 C -0.33 -19.54 10.16 84.04 0.85 -18.68 16 22 H 0.05 3.86 7.39 -2.91 -0.02 3.84 16 23 C -0.02 -0.91 5.50 84.93 0.47 -0.44 16 24 N -0.93 -56.75 13.96 21.66 0.30 -56.45 16 25 Si 0.97 38.93 27.74 68.60 1.90 40.83 16 26 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 27 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 28 H -0.23 -7.66 6.52 99.48 0.65 -7.01 16 29 C 0.13 3.04 6.04 86.36 0.52 3.57 16 30 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.05 0.60 8.13 -2.38 -0.02 0.58 16 34 H 0.08 0.58 5.87 -2.39 -0.01 0.56 16 35 H 0.10 0.64 5.44 -2.38 -0.01 0.62 16 36 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.05 0.43 6.35 -2.39 -0.02 0.41 16 38 H 0.08 0.14 8.14 -2.39 -0.02 0.12 16 39 H 0.07 0.31 8.14 -2.39 -0.02 0.29 16 40 H 0.11 0.37 4.75 -2.38 -0.01 0.36 16 41 H 0.09 0.55 8.13 -2.39 -0.02 0.53 16 42 H 0.11 0.35 8.14 -2.38 -0.02 0.33 16 43 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 44 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 45 H 0.07 1.01 7.44 -2.39 -0.02 0.99 16 46 H 0.35 10.69 8.18 -89.69 -0.73 9.95 16 47 H 0.08 1.97 7.43 -2.39 -0.02 1.96 16 48 H 0.11 2.93 8.06 -2.39 -0.02 2.91 16 49 H 0.39 15.28 5.76 -92.71 -0.53 14.75 16 50 H 0.28 15.48 8.31 -92.71 -0.77 14.71 16 51 H 0.06 1.99 7.01 -2.38 -0.02 1.97 16 52 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -89.03 405.41 0.48 -88.55 By element: Atomic # 1 Polarization: 37.66 SS G_CDS: -0.39 Total: 37.27 kcal Atomic # 6 Polarization: 14.25 SS G_CDS: 6.58 Total: 20.83 kcal Atomic # 7 Polarization: -116.27 SS G_CDS: -6.61 Total: -122.88 kcal Atomic # 8 Polarization: -63.60 SS G_CDS: -1.00 Total: -64.60 kcal Atomic # 14 Polarization: 38.93 SS G_CDS: 1.90 Total: 40.83 kcal Total: -89.03 0.48 -88.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207574601.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.691 kcal (2) G-P(sol) polarization free energy of solvation -89.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds