Wall clock time and date at job start Wed Apr 1 2020 00:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42901 * 109.46857 * 2 1 4 4 C 1.42907 * 113.99899 * 180.35293 * 3 2 1 5 5 H 1.09000 * 109.47141 * 341.96792 * 4 3 2 6 6 C 1.52999 * 109.46880 * 101.96450 * 4 3 2 7 7 C 1.53000 * 109.47404 * 294.53543 * 6 4 3 8 8 C 1.50698 * 109.47120 * 221.96628 * 4 3 2 9 9 O 1.21277 * 120.00393 * 344.81637 * 8 4 3 10 10 N 1.34776 * 119.99732 * 164.82610 * 8 4 3 11 11 C 1.46931 * 120.63202 * 5.11655 * 10 8 4 12 12 C 1.53190 * 108.77777 * 126.37114 * 11 10 8 13 13 C 1.53032 * 109.31482 * 54.63309 * 12 11 10 14 14 C 1.53045 * 109.53956 * 298.63374 * 13 12 11 15 15 H 1.08999 * 109.49942 * 301.41833 * 14 13 12 16 16 N 1.46897 * 109.50130 * 181.34548 * 14 13 12 17 17 C 1.46909 * 110.99720 * 85.00246 * 16 14 13 18 18 C 1.50693 * 109.46852 * 180.02562 * 17 16 14 19 19 O 1.21285 * 120.00537 * 0.02562 * 18 17 16 20 20 N 1.34780 * 119.99755 * 179.97438 * 18 17 16 21 21 C 1.37099 * 120.00073 * 180.02562 * 20 18 17 22 22 H 1.07996 * 120.00140 * 359.97438 * 21 20 18 23 23 C 1.38950 * 119.99754 * 180.02562 * 21 20 18 24 24 N 1.31409 * 120.00195 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99914 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47295 * 59.99525 * 25 23 21 27 27 H 1.48494 * 109.47443 * 179.97438 * 25 23 21 28 28 H 1.48506 * 109.47272 * 299.99792 * 25 23 21 29 29 C 1.46921 * 120.62891 * 184.83326 * 10 8 4 30 30 H 1.08997 * 109.46863 * 59.99821 * 1 2 3 31 31 H 1.08998 * 109.46987 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46719 * 299.99800 * 1 2 3 33 33 H 1.08994 * 109.47081 * 240.00364 * 2 1 3 34 34 H 1.08999 * 109.47336 * 120.00406 * 2 1 3 35 35 H 1.08998 * 109.47233 * 174.53251 * 6 4 3 36 36 H 1.09004 * 109.47047 * 54.53192 * 6 4 3 37 37 H 1.09004 * 109.47205 * 61.26991 * 7 6 4 38 38 H 1.08995 * 109.47721 * 181.27147 * 7 6 4 39 39 H 1.09000 * 109.46724 * 301.27349 * 7 6 4 40 40 H 1.08999 * 109.58125 * 246.15515 * 11 10 8 41 41 H 1.09004 * 109.58393 * 6.43347 * 11 10 8 42 42 H 1.08999 * 109.49489 * 174.58829 * 12 11 10 43 43 H 1.08999 * 109.49460 * 294.68184 * 12 11 10 44 44 H 1.09000 * 109.46408 * 58.65495 * 13 12 11 45 45 H 1.09001 * 109.46106 * 178.61505 * 13 12 11 46 46 H 1.00906 * 111.00286 * 321.05300 * 16 14 13 47 47 H 1.09000 * 109.46766 * 300.00437 * 17 16 14 48 48 H 1.08995 * 109.46867 * 60.00066 * 17 16 14 49 49 H 0.97000 * 119.99997 * 0.02562 * 20 18 17 50 50 H 0.97004 * 119.99929 * 180.02562 * 24 23 21 51 51 H 1.09000 * 109.58765 * 353.41749 * 29 10 8 52 52 H 1.09007 * 109.58713 * 113.84559 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 -0.0080 5 1 3.8721 0.5141 0.3056 6 6 3.9074 1.8015 -1.4213 7 6 3.5987 0.6332 -2.3597 8 6 3.8537 2.5510 0.9418 9 8 3.0370 3.3483 1.3520 10 7 5.1396 2.6407 1.3354 11 6 6.1616 1.7541 0.7624 12 6 7.3079 2.6111 0.2164 13 6 7.8242 3.5314 1.3247 14 6 6.6996 4.4635 1.7815 15 1 6.3442 5.0479 0.9328 16 7 7.2049 5.3681 2.8227 17 6 7.8530 6.5449 2.2284 18 6 8.3580 7.4473 3.3245 19 8 8.1947 7.1402 4.4864 20 7 8.9922 8.5953 3.0137 21 6 9.4522 9.4160 4.0109 22 1 9.3060 9.1430 5.0455 23 6 10.1055 10.5997 3.6904 24 7 10.2830 10.9322 2.4315 25 14 10.7316 11.7184 5.0490 26 1 11.7137 10.9812 5.8841 27 1 11.3873 12.9076 4.4483 28 1 9.5920 12.1554 5.8950 29 6 5.5472 3.6312 2.3412 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5137 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 4.9821 1.9830 -1.4085 36 1 3.3921 2.6955 -1.7725 37 1 2.5220 0.4662 -2.3900 38 1 3.9584 0.8670 -3.3617 39 1 4.0957 -0.2661 -1.9959 40 1 6.5409 1.0862 1.5357 41 1 5.7245 1.1669 -0.0453 42 1 8.1157 1.9635 -0.1246 43 1 6.9468 3.2130 -0.6175 44 1 8.1622 2.9296 2.1684 45 1 8.6563 4.1248 0.9458 46 1 7.8339 4.8855 3.4469 47 1 8.6897 6.2242 1.6078 48 1 7.1322 7.0857 1.6152 49 1 9.1232 8.8407 2.0845 50 1 10.7394 11.7584 2.2078 51 1 4.7058 4.2841 2.5731 52 1 5.8756 3.1194 3.2459 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207574602.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:52:39 Heat of formation + Delta-G solvation = -120.726473 kcal Electronic energy + Delta-G solvation = -30397.158415 eV Core-core repulsion = 26203.535153 eV Total energy + Delta-G solvation = -4193.623262 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.77746 -38.91017 -38.17508 -37.40768 -35.30606 -34.04670 -33.74913 -32.33459 -31.42971 -31.23635 -30.26465 -27.78275 -26.24680 -25.32869 -24.00703 -23.15809 -22.53555 -22.34498 -21.03755 -19.56439 -19.05488 -17.88223 -17.81950 -17.18823 -16.42864 -16.08744 -15.92626 -15.40478 -15.15921 -15.05233 -14.53305 -14.51046 -14.43406 -14.13952 -13.95583 -13.81497 -13.70913 -13.23651 -13.17570 -12.88446 -12.79199 -12.61574 -12.55877 -12.28770 -12.11472 -11.93161 -11.75499 -11.61023 -11.51395 -11.41741 -11.27810 -11.22601 -11.05210 -11.01155 -10.78697 -10.43129 -10.23360 -10.19988 -9.55300 -9.48847 -8.91876 -8.43024 -8.04529 -7.94610 -6.40428 -3.81253 2.38978 2.47161 3.21367 3.26916 3.31466 3.40572 3.91792 4.09118 4.09877 4.28219 4.35922 4.42287 4.55927 4.58392 4.63419 4.66029 4.74467 4.80296 4.92976 4.95345 5.01761 5.06262 5.15479 5.18292 5.19171 5.27243 5.28570 5.34581 5.43174 5.51320 5.53595 5.59425 5.63504 5.67552 5.73610 5.78372 5.79220 5.83792 5.97770 6.04999 6.10733 6.21411 6.31171 6.73001 7.15053 7.21559 7.56298 7.64296 8.00437 8.07270 8.62446 9.18991 9.55370 10.06874 10.77215 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.024612 B = 0.001842 C = 0.001802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.382400 B =15195.631976 C =15532.253631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.050 3.950 3 O -0.354 6.354 4 C 0.077 3.923 5 H 0.084 0.916 6 C -0.143 4.143 7 C -0.154 4.154 8 C 0.511 3.489 9 O -0.514 6.514 10 N -0.610 5.610 11 C 0.098 3.902 12 C -0.130 4.130 13 C -0.153 4.153 14 C 0.076 3.924 15 H 0.080 0.920 16 N -0.660 5.660 17 C 0.053 3.947 18 C 0.441 3.559 19 O -0.583 6.583 20 N -0.563 5.563 21 C -0.300 4.300 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.931 3.069 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.273 1.273 29 C 0.124 3.876 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.054 0.946 34 H 0.048 0.952 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.054 0.946 40 H 0.071 0.929 41 H 0.086 0.914 42 H 0.077 0.923 43 H 0.069 0.931 44 H 0.068 0.932 45 H 0.069 0.931 46 H 0.351 0.649 47 H 0.044 0.956 48 H 0.086 0.914 49 H 0.392 0.608 50 H 0.272 0.728 51 H 0.101 0.899 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.270 -26.069 -12.656 30.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.026 4.026 3 O -0.272 6.272 4 C 0.016 3.984 5 H 0.102 0.898 6 C -0.180 4.180 7 C -0.211 4.211 8 C 0.297 3.703 9 O -0.387 6.387 10 N -0.347 5.347 11 C -0.025 4.025 12 C -0.169 4.169 13 C -0.193 4.193 14 C -0.035 4.035 15 H 0.098 0.902 16 N -0.292 5.292 17 C -0.080 4.080 18 C 0.226 3.774 19 O -0.467 6.467 20 N -0.200 5.200 21 C -0.429 4.429 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.543 5.543 25 Si 0.758 3.242 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 C 0.002 3.998 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.100 0.900 36 H 0.099 0.901 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.073 0.927 40 H 0.090 0.910 41 H 0.104 0.896 42 H 0.095 0.905 43 H 0.088 0.912 44 H 0.087 0.913 45 H 0.087 0.913 46 H 0.171 0.829 47 H 0.062 0.938 48 H 0.104 0.896 49 H 0.225 0.775 50 H 0.082 0.918 51 H 0.119 0.881 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.490 -25.167 -11.614 30.005 hybrid contribution 1.633 0.153 -0.363 1.680 sum -9.858 -25.014 -11.978 29.434 Atomic orbital electron populations 1.21730 0.93372 1.02215 1.03528 1.22735 0.96105 0.83643 1.00166 1.88069 1.18176 1.26239 1.94755 1.21965 0.83844 0.97610 0.95013 0.89843 1.22057 1.01965 1.00745 0.93269 1.21840 1.02306 0.97458 0.99473 1.20560 0.81984 0.86125 0.81636 1.90739 1.51054 1.41493 1.55453 1.48071 1.07069 1.36953 1.42557 1.21929 0.89375 0.92560 0.98594 1.21866 0.97678 0.98686 0.98686 1.22340 0.99298 0.98666 0.98969 1.21810 0.94154 0.92934 0.94621 0.90153 1.59985 1.43751 1.07945 1.17519 1.21686 0.97683 0.92282 0.96301 1.19793 0.83986 0.83898 0.89724 1.90523 1.61182 1.74718 1.20273 1.41853 1.50171 1.18261 1.09716 1.19660 1.33007 1.00249 0.90029 0.87958 1.25261 0.97547 0.97887 0.97240 1.69605 1.42881 1.25224 1.16630 0.85911 0.79040 0.78964 0.80257 1.19941 1.20991 1.19866 1.21457 0.98532 0.90366 0.89474 0.91717 0.91035 0.91576 0.92790 0.93381 0.89989 0.90063 0.91904 0.91874 0.92688 0.91023 0.89572 0.90469 0.91241 0.91291 0.91260 0.82880 0.93818 0.89583 0.77471 0.91835 0.88060 0.91120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 10.28 37.16 0.38 -0.60 16 2 C 0.05 0.36 6.03 37.16 0.22 0.58 16 3 O -0.35 -3.85 9.32 -54.67 -0.51 -4.36 16 4 C 0.08 0.70 1.82 -27.88 -0.05 0.65 16 5 H 0.08 0.54 6.89 -51.93 -0.36 0.18 16 6 C -0.14 -1.02 5.19 -26.73 -0.14 -1.16 16 7 C -0.15 -0.79 9.01 37.16 0.33 -0.45 16 8 C 0.51 6.39 7.01 -10.99 -0.08 6.31 16 9 O -0.51 -8.95 15.98 -13.87 -0.22 -9.17 16 10 N -0.61 -6.38 2.98 -173.02 -0.52 -6.89 16 11 C 0.10 0.66 5.59 -3.71 -0.02 0.64 16 12 C -0.13 -0.91 6.08 -26.62 -0.16 -1.07 16 13 C -0.15 -1.46 5.14 -26.69 -0.14 -1.60 16 14 C 0.08 0.94 2.60 -67.81 -0.18 0.77 16 15 H 0.08 1.06 7.80 -51.93 -0.41 0.65 16 16 N -0.66 -10.59 5.88 -108.09 -0.64 -11.23 16 17 C 0.05 0.94 5.97 -4.97 -0.03 0.91 16 18 C 0.44 10.49 7.82 -10.99 -0.09 10.40 16 19 O -0.58 -15.96 15.78 5.55 0.09 -15.87 16 20 N -0.56 -14.41 5.29 -10.97 -0.06 -14.47 16 21 C -0.30 -8.45 9.68 -14.93 -0.14 -8.59 16 22 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -24.69 13.05 55.50 0.72 -23.97 16 25 Si 0.93 21.25 29.55 -169.99 -5.02 16.22 16 26 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 27 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 28 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 29 C 0.12 1.55 6.02 -3.93 -0.02 1.53 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.05 0.29 6.01 -51.93 -0.31 -0.03 16 34 H 0.05 0.31 8.13 -51.93 -0.42 -0.11 16 35 H 0.08 0.48 6.03 -51.93 -0.31 0.17 16 36 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.36 6.37 -51.93 -0.33 0.03 16 38 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 39 H 0.05 0.21 8.14 -51.93 -0.42 -0.22 16 40 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.09 0.41 4.40 -51.93 -0.23 0.18 16 42 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.07 0.70 7.43 -51.93 -0.39 0.32 16 46 H 0.35 5.69 8.18 -39.29 -0.32 5.36 16 47 H 0.04 0.68 7.42 -51.93 -0.39 0.30 16 48 H 0.09 1.45 8.06 -51.93 -0.42 1.04 16 49 H 0.39 9.57 7.90 -40.82 -0.32 9.25 16 50 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 51 H 0.10 1.57 7.00 -51.93 -0.36 1.21 16 52 H 0.07 0.84 8.14 -51.92 -0.42 0.42 16 LS Contribution 409.52 15.07 6.17 6.17 Total: -1.00 -34.84 409.52 -8.91 -43.75 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: -8.73 Total: 10.99 kcal Atomic # 6 Polarization: 9.03 SS G_CDS: -0.20 Total: 8.83 kcal Atomic # 7 Polarization: -56.08 SS G_CDS: -0.48 Total: -56.56 kcal Atomic # 8 Polarization: -28.76 SS G_CDS: -0.64 Total: -29.40 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -34.84 -8.91 -43.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207574602.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.975 kcal (2) G-P(sol) polarization free energy of solvation -34.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds