Wall clock time and date at job start Wed Apr 1 2020 00:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42901 * 109.46857 * 2 1 4 4 C 1.42907 * 113.99899 * 180.35293 * 3 2 1 5 5 H 1.09000 * 109.47141 * 341.96792 * 4 3 2 6 6 C 1.52999 * 109.46880 * 101.96450 * 4 3 2 7 7 C 1.53000 * 109.47404 * 294.53543 * 6 4 3 8 8 C 1.50698 * 109.47120 * 221.96628 * 4 3 2 9 9 O 1.21277 * 120.00393 * 344.81637 * 8 4 3 10 10 N 1.34776 * 119.99732 * 164.82610 * 8 4 3 11 11 C 1.46931 * 120.63202 * 5.11655 * 10 8 4 12 12 C 1.53190 * 108.77777 * 126.37114 * 11 10 8 13 13 C 1.53032 * 109.31482 * 54.63309 * 12 11 10 14 14 C 1.53045 * 109.53956 * 298.63374 * 13 12 11 15 15 H 1.08999 * 109.49942 * 301.41833 * 14 13 12 16 16 N 1.46897 * 109.50130 * 181.34548 * 14 13 12 17 17 C 1.46909 * 110.99720 * 85.00246 * 16 14 13 18 18 C 1.50693 * 109.46852 * 180.02562 * 17 16 14 19 19 O 1.21285 * 120.00537 * 0.02562 * 18 17 16 20 20 N 1.34780 * 119.99755 * 179.97438 * 18 17 16 21 21 C 1.37099 * 120.00073 * 180.02562 * 20 18 17 22 22 H 1.07996 * 120.00140 * 359.97438 * 21 20 18 23 23 C 1.38950 * 119.99754 * 180.02562 * 21 20 18 24 24 N 1.31409 * 120.00195 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99914 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47295 * 59.99525 * 25 23 21 27 27 H 1.48494 * 109.47443 * 179.97438 * 25 23 21 28 28 H 1.48506 * 109.47272 * 299.99792 * 25 23 21 29 29 C 1.46921 * 120.62891 * 184.83326 * 10 8 4 30 30 H 1.08997 * 109.46863 * 59.99821 * 1 2 3 31 31 H 1.08998 * 109.46987 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46719 * 299.99800 * 1 2 3 33 33 H 1.08994 * 109.47081 * 240.00364 * 2 1 3 34 34 H 1.08999 * 109.47336 * 120.00406 * 2 1 3 35 35 H 1.08998 * 109.47233 * 174.53251 * 6 4 3 36 36 H 1.09004 * 109.47047 * 54.53192 * 6 4 3 37 37 H 1.09004 * 109.47205 * 61.26991 * 7 6 4 38 38 H 1.08995 * 109.47721 * 181.27147 * 7 6 4 39 39 H 1.09000 * 109.46724 * 301.27349 * 7 6 4 40 40 H 1.08999 * 109.58125 * 246.15515 * 11 10 8 41 41 H 1.09004 * 109.58393 * 6.43347 * 11 10 8 42 42 H 1.08999 * 109.49489 * 174.58829 * 12 11 10 43 43 H 1.08999 * 109.49460 * 294.68184 * 12 11 10 44 44 H 1.09000 * 109.46408 * 58.65495 * 13 12 11 45 45 H 1.09001 * 109.46106 * 178.61505 * 13 12 11 46 46 H 1.00906 * 111.00286 * 321.05300 * 16 14 13 47 47 H 1.09000 * 109.46766 * 300.00437 * 17 16 14 48 48 H 1.08995 * 109.46867 * 60.00066 * 17 16 14 49 49 H 0.97000 * 119.99997 * 0.02562 * 20 18 17 50 50 H 0.97004 * 119.99929 * 180.02562 * 24 23 21 51 51 H 1.09000 * 109.58765 * 353.41749 * 29 10 8 52 52 H 1.09007 * 109.58713 * 113.84559 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 -0.0080 5 1 3.8721 0.5141 0.3056 6 6 3.9074 1.8015 -1.4213 7 6 3.5987 0.6332 -2.3597 8 6 3.8537 2.5510 0.9418 9 8 3.0370 3.3483 1.3520 10 7 5.1396 2.6407 1.3354 11 6 6.1616 1.7541 0.7624 12 6 7.3079 2.6111 0.2164 13 6 7.8242 3.5314 1.3247 14 6 6.6996 4.4635 1.7815 15 1 6.3442 5.0479 0.9328 16 7 7.2049 5.3681 2.8227 17 6 7.8530 6.5449 2.2284 18 6 8.3580 7.4473 3.3245 19 8 8.1947 7.1402 4.4864 20 7 8.9922 8.5953 3.0137 21 6 9.4522 9.4160 4.0109 22 1 9.3060 9.1430 5.0455 23 6 10.1055 10.5997 3.6904 24 7 10.2830 10.9322 2.4315 25 14 10.7316 11.7184 5.0490 26 1 11.7137 10.9812 5.8841 27 1 11.3873 12.9076 4.4483 28 1 9.5920 12.1554 5.8950 29 6 5.5472 3.6312 2.3412 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5137 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 4.9821 1.9830 -1.4085 36 1 3.3921 2.6955 -1.7725 37 1 2.5220 0.4662 -2.3900 38 1 3.9584 0.8670 -3.3617 39 1 4.0957 -0.2661 -1.9959 40 1 6.5409 1.0862 1.5357 41 1 5.7245 1.1669 -0.0453 42 1 8.1157 1.9635 -0.1246 43 1 6.9468 3.2130 -0.6175 44 1 8.1622 2.9296 2.1684 45 1 8.6563 4.1248 0.9458 46 1 7.8339 4.8855 3.4469 47 1 8.6897 6.2242 1.6078 48 1 7.1322 7.0857 1.6152 49 1 9.1232 8.8407 2.0845 50 1 10.7394 11.7584 2.2078 51 1 4.7058 4.2841 2.5731 52 1 5.8756 3.1194 3.2459 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207574602.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:52:38 Heat of formation + Delta-G solvation = -146.352899 kcal Electronic energy + Delta-G solvation = -30398.269660 eV Core-core repulsion = 26203.535153 eV Total energy + Delta-G solvation = -4194.734508 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.64043 -40.27016 -39.42320 -38.44350 -36.49533 -35.84142 -34.56460 -33.32126 -33.12985 -31.96564 -31.34783 -28.64115 -27.70891 -26.23606 -25.61476 -23.72221 -23.36473 -22.91968 -21.96016 -21.19545 -20.17614 -19.85404 -18.60883 -18.05160 -17.69524 -17.06073 -16.82020 -16.80647 -16.40355 -16.15152 -15.99984 -15.56772 -15.45420 -15.18124 -15.09176 -14.79734 -14.62740 -14.51725 -13.97120 -13.91632 -13.60276 -13.44769 -13.36776 -13.31774 -13.22350 -13.13737 -12.90188 -12.80791 -12.44858 -12.42408 -12.30132 -12.13284 -12.12677 -12.04908 -11.91094 -11.69889 -11.66800 -11.51403 -10.96066 -10.41442 -10.33787 -10.03378 -9.79356 -9.28242 -8.47728 -5.96789 1.39053 1.41050 1.47054 1.52080 1.65775 2.02876 2.28474 2.74995 2.95144 3.19173 3.38319 3.49901 3.76055 3.77750 3.81398 3.89864 3.96946 4.10488 4.17592 4.24498 4.27630 4.29433 4.30311 4.40938 4.47365 4.50618 4.51450 4.55527 4.60159 4.74205 4.79095 4.81145 4.85193 4.88847 5.01736 5.05403 5.06969 5.15192 5.18673 5.27541 5.31131 5.39407 5.39705 5.41186 5.86544 6.06553 6.09892 6.37156 6.39648 6.58288 7.09558 7.10824 7.53950 8.09204 8.69358 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.024612 B = 0.001842 C = 0.001802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.382400 B =15195.631976 C =15532.253631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.043 3.957 3 O -0.390 6.390 4 C 0.082 3.918 5 H 0.118 0.882 6 C -0.138 4.138 7 C -0.150 4.150 8 C 0.501 3.499 9 O -0.578 6.578 10 N -0.603 5.603 11 C 0.092 3.908 12 C -0.125 4.125 13 C -0.148 4.148 14 C 0.083 3.917 15 H 0.071 0.929 16 N -0.679 5.679 17 C 0.070 3.930 18 C 0.437 3.563 19 O -0.623 6.623 20 N -0.572 5.572 21 C -0.336 4.336 22 H 0.079 0.921 23 C -0.013 4.013 24 N -0.919 5.919 25 Si 0.994 3.006 26 H -0.270 1.270 27 H -0.269 1.269 28 H -0.274 1.274 29 C 0.128 3.872 30 H 0.058 0.942 31 H 0.096 0.904 32 H 0.046 0.954 33 H 0.079 0.921 34 H 0.056 0.944 35 H 0.099 0.901 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.091 0.909 41 H 0.114 0.886 42 H 0.108 0.892 43 H 0.067 0.933 44 H 0.076 0.924 45 H 0.067 0.933 46 H 0.350 0.650 47 H 0.073 0.927 48 H 0.095 0.905 49 H 0.396 0.604 50 H 0.278 0.722 51 H 0.061 0.939 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.830 -28.583 -14.400 33.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.033 4.033 3 O -0.309 6.309 4 C 0.021 3.979 5 H 0.135 0.865 6 C -0.176 4.176 7 C -0.207 4.207 8 C 0.289 3.711 9 O -0.457 6.457 10 N -0.337 5.337 11 C -0.029 4.029 12 C -0.163 4.163 13 C -0.187 4.187 14 C -0.028 4.028 15 H 0.089 0.911 16 N -0.311 5.311 17 C -0.062 4.062 18 C 0.225 3.775 19 O -0.509 6.509 20 N -0.209 5.209 21 C -0.466 4.466 22 H 0.097 0.903 23 C -0.212 4.212 24 N -0.560 5.560 25 Si 0.817 3.183 26 H -0.195 1.195 27 H -0.194 1.194 28 H -0.199 1.199 29 C 0.004 3.996 30 H 0.077 0.923 31 H 0.115 0.885 32 H 0.065 0.935 33 H 0.097 0.903 34 H 0.074 0.926 35 H 0.117 0.883 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.089 0.911 39 H 0.097 0.903 40 H 0.109 0.891 41 H 0.132 0.868 42 H 0.126 0.874 43 H 0.085 0.915 44 H 0.095 0.905 45 H 0.086 0.914 46 H 0.169 0.831 47 H 0.090 0.910 48 H 0.113 0.887 49 H 0.230 0.770 50 H 0.087 0.913 51 H 0.080 0.920 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.021 -27.724 -13.410 32.386 hybrid contribution 1.145 0.895 0.190 1.466 sum -8.875 -26.829 -13.220 31.198 Atomic orbital electron populations 1.21775 0.93396 1.03455 1.02304 1.22971 0.96248 0.82360 1.01684 1.88045 1.19295 1.28605 1.94909 1.22089 0.83506 0.97378 0.94968 0.86465 1.22053 1.02496 1.00683 0.92368 1.21829 1.02155 0.97316 0.99362 1.21428 0.81906 0.86277 0.81449 1.90705 1.52926 1.44098 1.57979 1.48160 1.07498 1.36516 1.41576 1.22295 0.88393 0.92216 0.99976 1.21872 0.98481 0.98553 0.97412 1.22267 0.97699 0.98515 1.00223 1.21763 0.95048 0.92819 0.93125 0.91118 1.59914 1.43655 1.08460 1.19076 1.21492 0.98756 0.91847 0.94110 1.20839 0.82377 0.83680 0.90651 1.90489 1.62314 1.75548 1.22574 1.41920 1.50758 1.18791 1.09442 1.19645 1.35222 1.01939 0.89772 0.90301 1.26054 0.96995 0.98556 0.99644 1.69666 1.42743 1.25720 1.17888 0.84977 0.78407 0.77332 0.77543 1.19502 1.19386 1.19935 1.21224 0.97068 0.90629 0.90647 0.92257 0.88528 0.93493 0.90324 0.92568 0.88320 0.92740 0.92674 0.91067 0.90345 0.89086 0.86812 0.87365 0.91452 0.90545 0.91444 0.83054 0.90970 0.88705 0.76974 0.91254 0.92020 0.90506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 10.28 71.98 0.74 -1.13 16 2 C 0.04 0.55 6.03 71.98 0.43 0.98 16 3 O -0.39 -8.33 9.32 -130.40 -1.22 -9.55 16 4 C 0.08 1.35 1.82 29.85 0.05 1.40 16 5 H 0.12 1.08 6.89 -2.39 -0.02 1.06 16 6 C -0.14 -1.69 5.19 30.59 0.16 -1.53 16 7 C -0.15 -1.05 9.01 71.98 0.65 -0.40 16 8 C 0.50 12.60 7.01 87.66 0.61 13.22 16 9 O -0.58 -21.54 15.98 15.56 0.25 -21.29 16 10 N -0.60 -12.01 2.98 -819.72 -2.44 -14.45 16 11 C 0.09 0.90 5.59 86.36 0.48 1.38 16 12 C -0.12 -1.26 6.08 30.67 0.19 -1.07 16 13 C -0.15 -2.45 5.14 30.62 0.16 -2.29 16 14 C 0.08 2.02 2.60 44.85 0.12 2.13 16 15 H 0.07 1.85 7.80 -2.39 -0.02 1.84 16 16 N -0.68 -21.92 5.88 -495.90 -2.92 -24.83 16 17 C 0.07 2.47 5.97 85.55 0.51 2.98 16 18 C 0.44 21.25 7.82 87.65 0.69 21.93 16 19 O -0.62 -35.22 15.78 -3.05 -0.05 -35.26 16 20 N -0.57 -29.89 5.29 -306.99 -1.62 -31.51 16 21 C -0.34 -19.41 9.68 84.04 0.81 -18.59 16 22 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 23 C -0.01 -0.68 5.50 84.93 0.47 -0.22 16 24 N -0.92 -50.07 13.05 21.66 0.28 -49.79 16 25 Si 0.99 43.45 29.55 68.60 2.03 45.47 16 26 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 27 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 28 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 29 C 0.13 3.26 6.02 86.22 0.52 3.78 16 30 H 0.06 0.77 8.14 -2.39 -0.02 0.76 16 31 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.08 0.60 6.01 -2.39 -0.01 0.58 16 34 H 0.06 0.61 8.13 -2.39 -0.02 0.59 16 35 H 0.10 0.83 6.03 -2.39 -0.01 0.82 16 36 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 37 H 0.05 0.49 6.37 -2.38 -0.02 0.48 16 38 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 39 H 0.08 0.21 8.14 -2.39 -0.02 0.19 16 40 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.11 0.53 4.40 -2.38 -0.01 0.52 16 42 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 43 H 0.07 0.75 8.14 -2.39 -0.02 0.74 16 44 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.07 1.18 7.43 -2.39 -0.02 1.16 16 46 H 0.35 11.37 8.18 -89.69 -0.73 10.63 16 47 H 0.07 2.15 7.42 -2.39 -0.02 2.13 16 48 H 0.09 3.19 8.06 -2.39 -0.02 3.17 16 49 H 0.40 19.63 7.90 -92.71 -0.73 18.90 16 50 H 0.28 14.18 8.31 -92.71 -0.77 13.41 16 51 H 0.06 2.07 7.00 -2.39 -0.02 2.06 16 52 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 Total: -1.00 -80.77 409.52 0.38 -80.40 By element: Atomic # 1 Polarization: 38.77 SS G_CDS: -0.53 Total: 38.24 kcal Atomic # 6 Polarization: 15.99 SS G_CDS: 6.59 Total: 22.58 kcal Atomic # 7 Polarization: -113.88 SS G_CDS: -6.70 Total: -120.58 kcal Atomic # 8 Polarization: -65.09 SS G_CDS: -1.01 Total: -66.11 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Total: -80.77 0.38 -80.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207574602.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.958 kcal (2) G-P(sol) polarization free energy of solvation -80.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds