Wall clock time and date at job start Wed Apr 1 2020 00:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47167 * 2 1 4 4 H 1.09006 * 109.46761 * 55.00501 * 3 2 1 5 5 C 1.53004 * 109.47275 * 174.99980 * 3 2 1 6 6 O 1.42893 * 109.47625 * 295.00681 * 3 2 1 7 7 C 1.42905 * 114.00625 * 149.99958 * 6 3 2 8 8 C 1.50696 * 109.47182 * 180.02562 * 7 6 3 9 9 O 1.21279 * 120.00579 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99457 * 179.97438 * 8 7 6 11 11 C 1.46924 * 120.63392 * 0.02562 * 10 8 7 12 12 C 1.53197 * 108.77377 * 233.60790 * 11 10 8 13 13 C 1.53045 * 109.31293 * 305.36377 * 12 11 10 14 14 C 1.53040 * 109.53586 * 61.36283 * 13 12 11 15 15 H 1.09008 * 109.49839 * 58.62059 * 14 13 12 16 16 N 1.46901 * 109.49323 * 178.68312 * 14 13 12 17 17 C 1.46905 * 110.99870 * 204.93589 * 16 14 13 18 18 C 1.50697 * 109.47066 * 180.02562 * 17 16 14 19 19 O 1.21297 * 120.00124 * 0.02562 * 18 17 16 20 20 N 1.34773 * 120.00196 * 180.02562 * 18 17 16 21 21 C 1.37100 * 120.00290 * 180.02562 * 20 18 17 22 22 H 1.07990 * 119.99768 * 359.97438 * 21 20 18 23 23 C 1.38956 * 119.99812 * 180.02562 * 21 20 18 24 24 N 1.31408 * 119.99864 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99403 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47078 * 60.00286 * 25 23 21 27 27 H 1.48505 * 109.46585 * 180.02562 * 25 23 21 28 28 H 1.48495 * 109.47705 * 299.99905 * 25 23 21 29 29 C 1.46936 * 120.59960 * 180.02562 * 10 8 7 30 30 H 1.09000 * 109.47246 * 299.99187 * 1 2 3 31 31 H 1.08995 * 109.47818 * 59.99254 * 1 2 3 32 32 H 1.09003 * 109.47173 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46769 * 240.00578 * 2 1 3 34 34 H 1.09003 * 109.47213 * 120.00807 * 2 1 3 35 35 H 1.09005 * 109.46331 * 60.00295 * 5 3 2 36 36 H 1.08996 * 109.46965 * 180.02562 * 5 3 2 37 37 H 1.08995 * 109.47179 * 300.00473 * 5 3 2 38 38 H 1.08997 * 109.46637 * 59.99586 * 7 6 3 39 39 H 1.09002 * 109.46486 * 300.00261 * 7 6 3 40 40 H 1.08998 * 109.59099 * 113.82100 * 11 10 8 41 41 H 1.09005 * 109.58545 * 353.39210 * 11 10 8 42 42 H 1.08994 * 109.49740 * 185.40740 * 12 11 10 43 43 H 1.09001 * 109.52160 * 65.32805 * 12 11 10 44 44 H 1.08992 * 109.45513 * 301.34420 * 13 12 11 45 45 H 1.08995 * 109.44362 * 181.37579 * 13 12 11 46 46 H 1.00901 * 111.00067 * 328.88764 * 16 14 13 47 47 H 1.09001 * 109.46798 * 300.00327 * 17 16 14 48 48 H 1.08998 * 109.46961 * 60.00043 * 17 16 14 49 49 H 0.97009 * 119.99629 * 359.97438 * 20 18 17 50 50 H 0.97004 * 119.99642 * 179.97438 * 24 23 21 51 51 H 1.08991 * 109.61830 * 6.62398 * 29 10 8 52 52 H 1.08995 * 109.56168 * 246.19285 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9814 0.8419 5 6 3.5648 1.4443 0.1257 6 8 1.6619 2.0814 -1.2209 7 6 1.4558 3.4904 -1.1001 8 6 1.0625 4.0572 -2.4398 9 8 0.9683 3.3268 -3.4034 10 7 0.8154 5.3760 -2.5672 11 6 0.9258 6.2737 -1.4093 12 6 -0.3836 7.0557 -1.2650 13 6 -0.6965 7.7665 -2.5837 14 6 -0.8734 6.7291 -3.6949 15 1 -1.6789 6.0446 -3.4287 16 7 -1.2047 7.4105 -4.9534 17 6 -1.9394 6.5164 -5.8584 18 6 -2.2606 7.2482 -7.1360 19 8 -1.9115 8.4011 -7.2788 20 7 -2.9359 6.6219 -8.1199 21 6 -3.2277 7.2875 -9.2825 22 1 -2.9168 8.3139 -9.4096 23 6 -3.9243 6.6418 -10.2967 24 7 -4.3030 5.3930 -10.1417 25 14 -4.3224 7.5491 -11.8802 26 1 -3.0610 7.9840 -12.5320 27 1 -5.0667 6.6458 -12.7943 28 1 -5.1566 8.7385 -11.5731 29 6 0.4304 5.9428 -3.8670 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8898 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8932 -0.5138 -0.8900 34 1 1.8933 -0.5140 0.8899 35 1 3.9994 0.9052 -0.7162 36 1 3.9281 2.4719 0.1262 37 1 3.8532 0.9569 1.0570 38 1 2.3768 3.9644 -0.7607 39 1 0.6618 3.6808 -0.3780 40 1 1.7514 6.9685 -1.5630 41 1 1.1023 5.6870 -0.5077 42 1 -0.2808 7.7935 -0.4694 43 1 -1.1935 6.3682 -1.0212 44 1 0.1249 8.4358 -2.8392 45 1 -1.6150 8.3433 -2.4759 46 1 -1.7256 8.2571 -4.7800 47 1 -1.3261 5.6440 -6.0842 48 1 -2.8650 6.1960 -5.3803 49 1 -3.2148 5.6998 -8.0059 50 1 -4.7896 4.9424 -10.8496 51 1 0.2796 5.1383 -4.5868 52 1 1.2158 6.6103 -4.2211 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207848416.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:45:29 Heat of formation + Delta-G solvation = -125.032794 kcal Electronic energy + Delta-G solvation = -30048.102461 eV Core-core repulsion = 25854.292462 eV Total energy + Delta-G solvation = -4193.809998 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.49842 -38.91263 -38.24866 -37.48468 -35.13824 -34.13371 -33.81577 -32.51325 -31.19937 -30.48728 -30.12978 -28.28829 -26.19949 -25.31389 -24.14573 -23.94073 -22.35574 -21.41140 -20.91937 -19.34910 -19.11357 -17.83911 -17.67491 -17.11114 -16.42458 -16.32306 -15.78913 -15.42761 -14.99997 -14.87087 -14.66158 -14.44372 -14.32284 -14.17080 -13.99535 -13.78336 -13.66605 -13.55370 -13.24523 -12.89752 -12.80497 -12.79377 -12.38283 -12.23238 -11.98795 -11.87436 -11.71849 -11.54277 -11.40668 -11.34844 -11.24731 -11.16431 -10.98632 -10.93297 -10.54947 -10.41256 -10.17650 -9.99381 -9.84604 -9.46508 -8.88944 -8.42180 -8.08372 -7.92513 -6.37622 -3.78645 2.41448 2.46051 3.22976 3.28463 3.32851 3.46044 3.94140 4.07092 4.19014 4.27453 4.42176 4.54964 4.55936 4.59461 4.65244 4.70680 4.72826 4.82980 4.92058 4.96544 5.06803 5.16197 5.17639 5.24195 5.24974 5.27967 5.29192 5.37095 5.50504 5.56560 5.60671 5.64915 5.72199 5.75860 5.79544 5.80650 5.84707 5.98301 6.02623 6.03572 6.11077 6.23179 6.33998 6.77663 7.16101 7.22942 7.58595 7.64354 8.01790 8.09694 8.64975 9.21250 9.58217 10.09471 10.80002 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.014154 B = 0.002018 C = 0.001833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.758777 B =13872.387386 C =15268.473806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C 0.083 3.917 4 H 0.061 0.939 5 C -0.177 4.177 6 O -0.354 6.354 7 C 0.047 3.953 8 C 0.514 3.486 9 O -0.513 6.513 10 N -0.612 5.612 11 C 0.105 3.895 12 C -0.132 4.132 13 C -0.122 4.122 14 C 0.075 3.925 15 H 0.046 0.954 16 N -0.661 5.661 17 C 0.049 3.951 18 C 0.441 3.559 19 O -0.584 6.584 20 N -0.563 5.563 21 C -0.300 4.300 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.901 5.901 25 Si 0.932 3.068 26 H -0.273 1.273 27 H -0.285 1.285 28 H -0.274 1.274 29 C 0.123 3.877 30 H 0.049 0.951 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.056 0.944 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.067 0.933 44 H 0.077 0.923 45 H 0.068 0.932 46 H 0.353 0.647 47 H 0.087 0.913 48 H 0.044 0.956 49 H 0.393 0.607 50 H 0.272 0.728 51 H 0.093 0.907 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.484 -5.852 27.974 30.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C 0.025 3.975 4 H 0.079 0.921 5 C -0.234 4.234 6 O -0.272 6.272 7 C -0.033 4.033 8 C 0.300 3.700 9 O -0.387 6.387 10 N -0.348 5.348 11 C -0.018 4.018 12 C -0.171 4.171 13 C -0.160 4.160 14 C -0.036 4.036 15 H 0.064 0.936 16 N -0.295 5.295 17 C -0.083 4.083 18 C 0.227 3.773 19 O -0.469 6.469 20 N -0.199 5.199 21 C -0.430 4.430 22 H 0.120 0.880 23 C -0.180 4.180 24 N -0.542 5.542 25 Si 0.759 3.241 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.200 1.200 29 C 0.000 4.000 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.093 0.907 41 H 0.099 0.901 42 H 0.098 0.902 43 H 0.086 0.914 44 H 0.095 0.905 45 H 0.087 0.913 46 H 0.174 0.826 47 H 0.105 0.895 48 H 0.062 0.938 49 H 0.226 0.774 50 H 0.082 0.918 51 H 0.112 0.888 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 12.141 -5.855 26.731 29.937 hybrid contribution -1.252 -0.006 -0.003 1.252 sum 10.889 -5.861 26.728 29.450 Atomic orbital electron populations 1.21748 0.95218 1.01843 1.02266 1.21626 0.96802 0.94531 1.02826 1.22241 0.94332 0.94302 0.86619 0.92125 1.22314 0.96023 1.02435 1.02659 1.88082 1.89341 1.17782 1.31985 1.22258 1.01136 0.84284 0.95632 1.20217 0.77742 0.81748 0.90278 1.90761 1.50078 1.57872 1.40021 1.48062 1.69075 1.06704 1.10996 1.21800 0.98478 0.93389 0.88141 1.21905 0.97408 0.99664 0.98120 1.21713 1.02937 0.97826 0.93562 1.21815 0.96761 0.95379 0.89645 0.93612 1.59943 1.50468 1.07519 1.11574 1.21756 0.96740 0.96269 0.93562 1.19769 0.83926 0.88068 0.85560 1.90516 1.57052 1.17885 1.81435 1.41865 1.49119 1.14601 1.14349 1.19651 1.33080 0.98494 0.91740 0.87963 1.25278 0.97084 0.95857 0.99785 1.69611 1.39103 1.10605 1.34892 0.85908 0.78676 0.78785 0.80771 1.19869 1.20994 1.19956 1.21639 0.96384 0.98196 0.83743 0.93149 0.91671 0.92605 0.90797 0.90693 0.91463 0.92495 0.91514 0.90531 0.90477 0.90706 0.90120 0.90224 0.91410 0.90457 0.91339 0.82601 0.89491 0.93808 0.77410 0.91808 0.88820 0.90256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.81 37.16 0.36 -0.79 16 2 C -0.12 -0.85 5.64 -26.74 -0.15 -1.00 16 3 C 0.08 0.61 2.72 -26.73 -0.07 0.54 16 4 H 0.06 0.34 7.79 -51.93 -0.40 -0.06 16 5 C -0.18 -1.09 9.53 37.16 0.35 -0.74 16 6 O -0.35 -3.87 9.06 -55.14 -0.50 -4.37 16 7 C 0.05 0.41 4.57 36.00 0.16 0.57 16 8 C 0.51 6.49 7.77 -10.99 -0.09 6.41 16 9 O -0.51 -9.10 15.91 -14.35 -0.23 -9.32 16 10 N -0.61 -6.55 2.97 -172.75 -0.51 -7.07 16 11 C 0.10 0.69 6.34 -3.71 -0.02 0.67 16 12 C -0.13 -0.87 6.08 -26.61 -0.16 -1.03 16 13 C -0.12 -1.13 5.17 -26.69 -0.14 -1.27 16 14 C 0.08 0.94 2.64 -67.58 -0.18 0.76 16 15 H 0.05 0.60 7.80 -51.92 -0.41 0.20 16 16 N -0.66 -10.66 5.93 -107.84 -0.64 -11.30 16 17 C 0.05 0.91 5.97 -4.97 -0.03 0.88 16 18 C 0.44 10.69 7.82 -10.99 -0.09 10.61 16 19 O -0.58 -16.06 15.78 5.54 0.09 -15.97 16 20 N -0.56 -14.71 5.29 -10.96 -0.06 -14.77 16 21 C -0.30 -8.56 9.68 -14.93 -0.14 -8.70 16 22 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -25.15 13.05 55.50 0.72 -24.42 16 25 Si 0.93 21.48 29.55 -169.99 -5.02 16.46 16 26 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 27 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 28 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 29 C 0.12 1.61 5.90 -3.69 -0.02 1.59 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.63 7.82 -51.93 -0.41 0.23 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.33 7.87 -51.93 -0.41 -0.08 16 37 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.08 0.48 7.67 -51.93 -0.40 0.08 16 39 H 0.08 0.49 7.64 -51.93 -0.40 0.09 16 40 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.08 0.33 5.93 -51.93 -0.31 0.03 16 42 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.07 0.62 8.10 -51.93 -0.42 0.19 16 46 H 0.35 5.74 8.04 -39.29 -0.32 5.42 16 47 H 0.09 1.57 7.56 -51.93 -0.39 1.18 16 48 H 0.04 0.74 8.06 -51.93 -0.42 0.32 16 49 H 0.39 9.90 7.90 -40.82 -0.32 9.58 16 50 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 51 H 0.09 1.49 6.48 -51.93 -0.34 1.15 16 52 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 417.69 15.07 6.29 6.29 Total: -1.00 -35.23 417.69 -9.26 -44.49 By element: Atomic # 1 Polarization: 20.10 SS G_CDS: -9.09 Total: 11.01 kcal Atomic # 6 Polarization: 9.29 SS G_CDS: -0.31 Total: 8.98 kcal Atomic # 7 Polarization: -57.07 SS G_CDS: -0.49 Total: -57.56 kcal Atomic # 8 Polarization: -29.03 SS G_CDS: -0.64 Total: -29.67 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -35.23 -9.26 -44.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207848416.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.544 kcal (2) G-P(sol) polarization free energy of solvation -35.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds