Wall clock time and date at job start Wed Apr 1 2020 00:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47167 * 2 1 4 4 H 1.09006 * 109.46761 * 55.00501 * 3 2 1 5 5 C 1.53004 * 109.47275 * 174.99980 * 3 2 1 6 6 O 1.42893 * 109.47625 * 295.00681 * 3 2 1 7 7 C 1.42905 * 114.00625 * 149.99958 * 6 3 2 8 8 C 1.50696 * 109.47182 * 180.02562 * 7 6 3 9 9 O 1.21279 * 120.00579 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99457 * 179.97438 * 8 7 6 11 11 C 1.46924 * 120.63392 * 0.02562 * 10 8 7 12 12 C 1.53197 * 108.77377 * 233.60790 * 11 10 8 13 13 C 1.53045 * 109.31293 * 305.36377 * 12 11 10 14 14 C 1.53040 * 109.53586 * 61.36283 * 13 12 11 15 15 H 1.09008 * 109.49839 * 58.62059 * 14 13 12 16 16 N 1.46901 * 109.49323 * 178.68312 * 14 13 12 17 17 C 1.46905 * 110.99870 * 204.93589 * 16 14 13 18 18 C 1.50697 * 109.47066 * 180.02562 * 17 16 14 19 19 O 1.21297 * 120.00124 * 0.02562 * 18 17 16 20 20 N 1.34773 * 120.00196 * 180.02562 * 18 17 16 21 21 C 1.37100 * 120.00290 * 180.02562 * 20 18 17 22 22 H 1.07990 * 119.99768 * 359.97438 * 21 20 18 23 23 C 1.38956 * 119.99812 * 180.02562 * 21 20 18 24 24 N 1.31408 * 119.99864 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99403 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47078 * 60.00286 * 25 23 21 27 27 H 1.48505 * 109.46585 * 180.02562 * 25 23 21 28 28 H 1.48495 * 109.47705 * 299.99905 * 25 23 21 29 29 C 1.46936 * 120.59960 * 180.02562 * 10 8 7 30 30 H 1.09000 * 109.47246 * 299.99187 * 1 2 3 31 31 H 1.08995 * 109.47818 * 59.99254 * 1 2 3 32 32 H 1.09003 * 109.47173 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46769 * 240.00578 * 2 1 3 34 34 H 1.09003 * 109.47213 * 120.00807 * 2 1 3 35 35 H 1.09005 * 109.46331 * 60.00295 * 5 3 2 36 36 H 1.08996 * 109.46965 * 180.02562 * 5 3 2 37 37 H 1.08995 * 109.47179 * 300.00473 * 5 3 2 38 38 H 1.08997 * 109.46637 * 59.99586 * 7 6 3 39 39 H 1.09002 * 109.46486 * 300.00261 * 7 6 3 40 40 H 1.08998 * 109.59099 * 113.82100 * 11 10 8 41 41 H 1.09005 * 109.58545 * 353.39210 * 11 10 8 42 42 H 1.08994 * 109.49740 * 185.40740 * 12 11 10 43 43 H 1.09001 * 109.52160 * 65.32805 * 12 11 10 44 44 H 1.08992 * 109.45513 * 301.34420 * 13 12 11 45 45 H 1.08995 * 109.44362 * 181.37579 * 13 12 11 46 46 H 1.00901 * 111.00067 * 328.88764 * 16 14 13 47 47 H 1.09001 * 109.46798 * 300.00327 * 17 16 14 48 48 H 1.08998 * 109.46961 * 60.00043 * 17 16 14 49 49 H 0.97009 * 119.99629 * 359.97438 * 20 18 17 50 50 H 0.97004 * 119.99642 * 179.97438 * 24 23 21 51 51 H 1.08991 * 109.61830 * 6.62398 * 29 10 8 52 52 H 1.08995 * 109.56168 * 246.19285 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9814 0.8419 5 6 3.5648 1.4443 0.1257 6 8 1.6619 2.0814 -1.2209 7 6 1.4558 3.4904 -1.1001 8 6 1.0625 4.0572 -2.4398 9 8 0.9683 3.3268 -3.4034 10 7 0.8154 5.3760 -2.5672 11 6 0.9258 6.2737 -1.4093 12 6 -0.3836 7.0557 -1.2650 13 6 -0.6965 7.7665 -2.5837 14 6 -0.8734 6.7291 -3.6949 15 1 -1.6789 6.0446 -3.4287 16 7 -1.2047 7.4105 -4.9534 17 6 -1.9394 6.5164 -5.8584 18 6 -2.2606 7.2482 -7.1360 19 8 -1.9115 8.4011 -7.2788 20 7 -2.9359 6.6219 -8.1199 21 6 -3.2277 7.2875 -9.2825 22 1 -2.9168 8.3139 -9.4096 23 6 -3.9243 6.6418 -10.2967 24 7 -4.3030 5.3930 -10.1417 25 14 -4.3224 7.5491 -11.8802 26 1 -3.0610 7.9840 -12.5320 27 1 -5.0667 6.6458 -12.7943 28 1 -5.1566 8.7385 -11.5731 29 6 0.4304 5.9428 -3.8670 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8898 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8932 -0.5138 -0.8900 34 1 1.8933 -0.5140 0.8899 35 1 3.9994 0.9052 -0.7162 36 1 3.9281 2.4719 0.1262 37 1 3.8532 0.9569 1.0570 38 1 2.3768 3.9644 -0.7607 39 1 0.6618 3.6808 -0.3780 40 1 1.7514 6.9685 -1.5630 41 1 1.1023 5.6870 -0.5077 42 1 -0.2808 7.7935 -0.4694 43 1 -1.1935 6.3682 -1.0212 44 1 0.1249 8.4358 -2.8392 45 1 -1.6150 8.3433 -2.4759 46 1 -1.7256 8.2571 -4.7800 47 1 -1.3261 5.6440 -6.0842 48 1 -2.8650 6.1960 -5.3803 49 1 -3.2148 5.6998 -8.0059 50 1 -4.7896 4.9424 -10.8496 51 1 0.2796 5.1383 -4.5868 52 1 1.2158 6.6103 -4.2211 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207848416.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:45:28 Heat of formation + Delta-G solvation = -150.680387 kcal Electronic energy + Delta-G solvation = -30049.214624 eV Core-core repulsion = 25854.292462 eV Total energy + Delta-G solvation = -4194.922161 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.39422 -40.23961 -39.47030 -38.55274 -36.43113 -35.79549 -34.73178 -33.45940 -33.22155 -31.44503 -30.75527 -29.21263 -27.76542 -26.12922 -25.83651 -24.50646 -23.25465 -21.95442 -21.88520 -21.09103 -20.11436 -19.90843 -18.46906 -17.97077 -17.70319 -17.21101 -17.04518 -16.66243 -16.44397 -16.11946 -15.72629 -15.63451 -15.41840 -15.26249 -15.09748 -14.72439 -14.64623 -14.32927 -14.17325 -14.04189 -13.77140 -13.62499 -13.57545 -13.49418 -13.21473 -12.94206 -12.91517 -12.58036 -12.47557 -12.45230 -12.25629 -12.13999 -11.95605 -11.94723 -11.87285 -11.52737 -11.49138 -11.44952 -10.80941 -10.57942 -10.39665 -10.05595 -9.80820 -9.41113 -8.48708 -5.98516 1.38452 1.39978 1.50917 1.51935 1.65182 2.00041 2.27206 2.77606 2.93344 3.17690 3.43642 3.48546 3.78225 3.87925 3.91735 3.99258 4.06754 4.10529 4.15824 4.20842 4.23662 4.27405 4.28878 4.37221 4.43593 4.47763 4.53920 4.65031 4.68246 4.72892 4.76783 4.82858 4.85915 4.95722 5.05438 5.07934 5.10817 5.13205 5.22228 5.30220 5.31784 5.38229 5.42673 5.43700 5.85258 6.04054 6.17123 6.35281 6.41176 6.55614 7.08516 7.11507 7.51386 8.05628 8.68604 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.014154 B = 0.002018 C = 0.001833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.758777 B =13872.387386 C =15268.473806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C 0.078 3.922 4 H 0.087 0.913 5 C -0.174 4.174 6 O -0.392 6.392 7 C 0.052 3.948 8 C 0.503 3.497 9 O -0.580 6.580 10 N -0.606 5.606 11 C 0.097 3.903 12 C -0.125 4.125 13 C -0.119 4.119 14 C 0.081 3.919 15 H 0.041 0.959 16 N -0.671 5.671 17 C 0.066 3.934 18 C 0.440 3.560 19 O -0.619 6.619 20 N -0.573 5.573 21 C -0.335 4.335 22 H 0.082 0.918 23 C -0.016 4.016 24 N -0.922 5.922 25 Si 0.997 3.003 26 H -0.271 1.271 27 H -0.271 1.271 28 H -0.269 1.269 29 C 0.126 3.874 30 H 0.066 0.934 31 H 0.035 0.965 32 H 0.058 0.942 33 H 0.052 0.948 34 H 0.100 0.900 35 H 0.047 0.953 36 H 0.063 0.937 37 H 0.087 0.913 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.089 0.911 41 H 0.116 0.884 42 H 0.112 0.888 43 H 0.066 0.934 44 H 0.077 0.923 45 H 0.073 0.927 46 H 0.353 0.647 47 H 0.089 0.911 48 H 0.064 0.936 49 H 0.395 0.605 50 H 0.278 0.722 51 H 0.056 0.944 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.871 -5.182 31.156 33.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C 0.021 3.979 4 H 0.105 0.895 5 C -0.232 4.232 6 O -0.312 6.312 7 C -0.028 4.028 8 C 0.292 3.708 9 O -0.459 6.459 10 N -0.340 5.340 11 C -0.024 4.024 12 C -0.163 4.163 13 C -0.157 4.157 14 C -0.030 4.030 15 H 0.059 0.941 16 N -0.305 5.305 17 C -0.067 4.067 18 C 0.227 3.773 19 O -0.505 6.505 20 N -0.210 5.210 21 C -0.465 4.465 22 H 0.100 0.900 23 C -0.216 4.216 24 N -0.563 5.563 25 Si 0.820 3.180 26 H -0.197 1.197 27 H -0.195 1.195 28 H -0.194 1.194 29 C 0.002 3.998 30 H 0.085 0.915 31 H 0.054 0.946 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.118 0.882 35 H 0.066 0.934 36 H 0.082 0.918 37 H 0.106 0.894 38 H 0.127 0.873 39 H 0.127 0.873 40 H 0.107 0.893 41 H 0.134 0.866 42 H 0.131 0.869 43 H 0.085 0.915 44 H 0.096 0.904 45 H 0.092 0.908 46 H 0.174 0.826 47 H 0.107 0.893 48 H 0.081 0.919 49 H 0.228 0.772 50 H 0.087 0.913 51 H 0.074 0.926 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 12.534 -5.171 29.977 32.901 hybrid contribution -1.336 -0.213 -0.940 1.647 sum 11.198 -5.384 29.038 31.584 Atomic orbital electron populations 1.21724 0.95722 1.01890 1.01552 1.21682 0.96358 0.94929 1.02994 1.22457 0.95119 0.94156 0.86176 0.89533 1.22306 0.95140 1.02872 1.02869 1.88058 1.89804 1.19023 1.34303 1.22382 1.03550 0.83577 0.93243 1.21124 0.76593 0.81796 0.91250 1.90729 1.53165 1.59583 1.42470 1.48164 1.67797 1.06890 1.11194 1.22210 0.99118 0.93481 0.87583 1.21908 0.97188 1.00110 0.97119 1.21723 1.03352 0.96977 0.93629 1.21855 0.95922 0.96103 0.89095 0.94106 1.59908 1.49921 1.07458 1.13237 1.21544 0.97953 0.95804 0.91406 1.20711 0.82175 0.87796 0.86628 1.90478 1.58007 1.19607 1.82426 1.41961 1.49845 1.14699 1.14519 1.19674 1.35029 0.98258 0.93529 0.89988 1.26141 0.96183 0.96657 1.02603 1.69687 1.39011 1.11555 1.36005 0.84926 0.78523 0.77853 0.76649 1.19666 1.19508 1.19364 1.21392 0.96722 0.96863 0.84825 0.91490 0.94598 0.92271 0.92900 0.88205 0.93429 0.91762 0.89446 0.87348 0.87263 0.89260 0.86587 0.86940 0.91483 0.90390 0.90796 0.82624 0.89306 0.91855 0.77168 0.91253 0.92573 0.90706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.81 71.98 0.71 -1.46 16 2 C -0.12 -1.59 5.64 30.59 0.17 -1.42 16 3 C 0.08 0.98 2.72 30.59 0.08 1.06 16 4 H 0.09 0.63 7.79 -2.38 -0.02 0.61 16 5 C -0.17 -1.78 9.53 71.98 0.69 -1.10 16 6 O -0.39 -8.29 9.06 -129.95 -1.18 -9.47 16 7 C 0.05 0.78 4.57 71.23 0.33 1.10 16 8 C 0.50 12.60 7.77 87.66 0.68 13.28 16 9 O -0.58 -21.83 15.91 16.01 0.25 -21.57 16 10 N -0.61 -12.30 2.97 -818.84 -2.43 -14.74 16 11 C 0.10 0.92 6.34 86.36 0.55 1.46 16 12 C -0.12 -1.16 6.08 30.67 0.19 -0.98 16 13 C -0.12 -1.94 5.17 30.62 0.16 -1.78 16 14 C 0.08 1.99 2.64 45.00 0.12 2.11 16 15 H 0.04 1.06 7.80 -2.38 -0.02 1.04 16 16 N -0.67 -21.90 5.93 -495.11 -2.94 -24.84 16 17 C 0.07 2.48 5.97 85.55 0.51 2.99 16 18 C 0.44 22.00 7.82 87.66 0.69 22.68 16 19 O -0.62 -35.10 15.78 -3.08 -0.05 -35.15 16 20 N -0.57 -31.02 5.29 -306.99 -1.62 -32.65 16 21 C -0.34 -19.71 9.68 84.04 0.81 -18.90 16 22 H 0.08 5.06 7.16 -2.92 -0.02 5.04 16 23 C -0.02 -0.90 5.50 84.93 0.47 -0.43 16 24 N -0.92 -51.81 13.05 21.66 0.28 -51.52 16 25 Si 1.00 44.14 29.55 68.60 2.03 46.17 16 26 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 27 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 28 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 29 C 0.13 3.37 5.90 86.37 0.51 3.88 16 30 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.03 0.72 7.82 -2.39 -0.02 0.70 16 32 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 36 H 0.06 0.55 7.87 -2.39 -0.02 0.54 16 37 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.11 0.92 7.67 -2.39 -0.02 0.91 16 39 H 0.11 0.92 7.64 -2.39 -0.02 0.90 16 40 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.12 0.33 5.93 -2.38 -0.01 0.32 16 42 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 43 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.07 1.16 8.10 -2.39 -0.02 1.14 16 46 H 0.35 11.50 8.04 -89.69 -0.72 10.78 16 47 H 0.09 3.35 7.56 -2.39 -0.02 3.33 16 48 H 0.06 2.16 8.06 -2.39 -0.02 2.14 16 49 H 0.39 20.62 7.90 -92.70 -0.73 19.89 16 50 H 0.28 14.63 8.31 -92.71 -0.77 13.86 16 51 H 0.06 1.93 6.48 -2.39 -0.02 1.91 16 52 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -82.01 417.69 0.46 -81.55 By element: Atomic # 1 Polarization: 40.25 SS G_CDS: -0.53 Total: 39.71 kcal Atomic # 6 Polarization: 15.86 SS G_CDS: 6.65 Total: 22.51 kcal Atomic # 7 Polarization: -117.03 SS G_CDS: -6.71 Total: -123.75 kcal Atomic # 8 Polarization: -65.22 SS G_CDS: -0.97 Total: -66.19 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -82.01 0.46 -81.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207848416.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.134 kcal (2) G-P(sol) polarization free energy of solvation -82.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds