Wall clock time and date at job start Wed Apr 1 2020 00:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42907 * 109.47095 * 2 1 4 4 C 1.42895 * 113.99685 * 181.61115 * 3 2 1 5 5 H 1.08993 * 109.47680 * 355.97324 * 4 3 2 6 6 C 1.53001 * 109.46817 * 235.97064 * 4 3 2 7 7 C 1.52995 * 109.47152 * 65.69615 * 6 4 3 8 8 C 1.50703 * 109.46998 * 115.97592 * 4 3 2 9 9 O 1.21279 * 120.00208 * 4.99714 * 8 4 3 10 10 N 1.34776 * 119.99721 * 184.99533 * 8 4 3 11 11 C 1.47483 * 127.03613 * 0.02562 * 10 8 4 12 12 C 1.54014 * 107.08485 * 154.51410 * 11 10 8 13 13 H 1.08995 * 110.32275 * 120.19976 * 12 11 10 14 14 C 1.52994 * 110.32842 * 242.41656 * 12 11 10 15 15 C 1.54617 * 105.04063 * 1.30850 * 12 11 10 16 16 H 1.09000 * 110.73990 * 263.50933 * 15 12 11 17 17 N 1.46903 * 110.73791 * 140.36596 * 15 12 11 18 18 C 1.46900 * 111.00018 * 154.99722 * 17 15 12 19 19 C 1.50699 * 109.47020 * 179.97438 * 18 17 15 20 20 O 1.21298 * 120.00297 * 0.02562 * 19 18 17 21 21 N 1.34776 * 120.00201 * 180.02562 * 19 18 17 22 22 C 1.37091 * 120.00384 * 180.02562 * 21 19 18 23 23 H 1.08004 * 119.99861 * 359.97438 * 22 21 19 24 24 C 1.38951 * 120.00508 * 180.02562 * 22 21 19 25 25 N 1.31402 * 120.00393 * 179.97438 * 24 22 21 26 26 Si 1.86804 * 119.99640 * 359.97438 * 24 22 21 27 27 H 1.48505 * 109.47020 * 90.00220 * 26 24 22 28 28 H 1.48498 * 109.47296 * 210.00013 * 26 24 22 29 29 H 1.48503 * 109.46995 * 330.00410 * 26 24 22 30 30 C 1.48118 * 127.03245 * 179.70507 * 10 8 4 31 31 H 1.08995 * 109.47211 * 60.00035 * 1 2 3 32 32 H 1.09000 * 109.46714 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46834 * 299.99783 * 1 2 3 34 34 H 1.09000 * 109.46834 * 240.00217 * 2 1 3 35 35 H 1.08995 * 109.47211 * 119.99965 * 2 1 3 36 36 H 1.09005 * 109.47299 * 185.69386 * 6 4 3 37 37 H 1.09003 * 109.47639 * 305.69290 * 6 4 3 38 38 H 1.09009 * 109.46996 * 299.42929 * 7 6 4 39 39 H 1.09000 * 109.47349 * 59.42483 * 7 6 4 40 40 H 1.08999 * 109.47394 * 179.43223 * 7 6 4 41 41 H 1.08996 * 109.91486 * 273.87883 * 11 10 8 42 42 H 1.08999 * 109.91350 * 35.16263 * 11 10 8 43 43 H 1.08998 * 109.47146 * 58.54549 * 14 12 11 44 44 H 1.09002 * 109.46972 * 178.54583 * 14 12 11 45 45 H 1.09005 * 109.47358 * 298.54707 * 14 12 11 46 46 H 1.00902 * 110.99845 * 278.95771 * 17 15 12 47 47 H 1.08994 * 109.47177 * 300.00013 * 18 17 15 48 48 H 1.09001 * 109.46830 * 60.00272 * 18 17 15 49 49 H 0.97003 * 119.99641 * 359.97438 * 21 19 18 50 50 H 0.97000 * 120.00074 * 179.97438 * 25 24 22 51 51 H 1.08999 * 110.65991 * 337.77525 * 30 10 8 52 52 H 1.08996 * 110.66141 * 100.88719 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4304 1.4603 -0.0367 5 1 3.8752 0.4665 0.0144 6 6 3.9066 2.2941 1.1545 7 6 3.6085 1.5437 2.4540 8 6 3.8481 2.1323 -1.3193 9 8 3.0074 2.5616 -2.0807 10 7 5.1560 2.2563 -1.6201 11 6 6.3007 1.7938 -0.8134 12 6 7.4736 1.5608 -1.7841 13 1 8.3181 2.1958 -1.5168 14 6 7.8893 0.0885 -1.7717 15 6 6.9263 1.9526 -3.1761 16 1 6.5811 1.0716 -3.7171 17 7 7.9456 2.6712 -3.9524 18 6 7.7038 2.5321 -5.3947 19 6 8.7666 3.2811 -6.1566 20 8 9.6399 3.8722 -5.5572 21 7 8.7468 3.2943 -7.5042 22 6 9.7139 3.9752 -8.1974 23 1 10.4915 4.5015 -7.6636 24 6 9.6933 3.9892 -9.5867 25 7 10.6199 4.6423 -10.2511 26 14 8.3480 3.0795 -10.5099 27 1 7.1964 3.9907 -10.7312 28 1 8.8723 2.6174 -11.8201 29 1 7.9058 1.9075 -9.7123 30 6 5.7375 2.8790 -2.8317 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 4.9800 2.4656 1.0720 37 1 3.3852 3.2513 1.1598 38 1 2.5342 1.3811 2.5414 39 1 4.1219 0.5822 2.4443 40 1 3.9569 2.1331 3.3021 41 1 6.5704 2.5548 -0.0812 42 1 6.0466 0.8621 -0.3081 43 1 7.0383 -0.5317 -2.0533 44 1 8.7020 -0.0656 -2.4815 45 1 8.2237 -0.1862 -0.7712 46 1 7.9857 3.6431 -3.6844 47 1 7.7351 1.4776 -5.6684 48 1 6.7242 2.9423 -5.6400 49 1 8.0487 2.8213 -7.9836 50 1 10.6057 4.6517 -11.2209 51 1 5.0115 2.8901 -3.6446 52 1 6.0890 3.8877 -2.6148 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001214255535.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:54:31 Heat of formation + Delta-G solvation = -113.334834 kcal Electronic energy + Delta-G solvation = -30418.446433 eV Core-core repulsion = 26225.143696 eV Total energy + Delta-G solvation = -4193.302737 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -40.72305 -39.10352 -38.31545 -37.51696 -35.01535 -34.18867 -33.78153 -32.60908 -31.67340 -31.30962 -29.55514 -27.64629 -26.67207 -25.93577 -23.98836 -23.24019 -22.79247 -21.99981 -20.58310 -19.85715 -19.37288 -18.37598 -17.73082 -17.25332 -16.63100 -16.10687 -15.88152 -15.57612 -15.42789 -14.88476 -14.78583 -14.53122 -14.32028 -14.23395 -13.74425 -13.64740 -13.46913 -13.37743 -13.05152 -12.83409 -12.78776 -12.61800 -12.55087 -12.38272 -12.30524 -12.16270 -12.02577 -11.79453 -11.75064 -11.61878 -11.34885 -11.24715 -11.17238 -11.12619 -10.87075 -10.60130 -10.52229 -9.98663 -9.59724 -9.58386 -9.04649 -8.61743 -8.23325 -8.17692 -6.32313 -3.83833 2.30815 2.44002 3.02349 3.06759 3.15006 3.31968 3.71435 3.91365 4.07925 4.09934 4.29952 4.35250 4.38709 4.51854 4.61514 4.66904 4.75450 4.81709 4.86860 4.92901 4.95059 5.01330 5.02872 5.17256 5.20321 5.22486 5.28575 5.31018 5.46307 5.49770 5.52445 5.53571 5.56956 5.60790 5.62622 5.68686 5.76283 5.77725 5.79097 5.84961 5.90742 6.01417 6.12490 6.68096 7.00233 7.23139 7.44939 7.56377 7.90165 8.12761 8.57868 8.93400 9.40896 9.80322 10.80662 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.017501 B = 0.002098 C = 0.001962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.479506 B =13345.051124 C =14266.108960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.354 6.354 4 C 0.081 3.919 5 H 0.087 0.913 6 C -0.131 4.131 7 C -0.149 4.149 8 C 0.517 3.483 9 O -0.522 6.522 10 N -0.617 5.617 11 C 0.100 3.900 12 C -0.096 4.096 13 H 0.099 0.901 14 C -0.139 4.139 15 C 0.080 3.920 16 H 0.091 0.909 17 N -0.651 5.651 18 C 0.046 3.954 19 C 0.449 3.551 20 O -0.565 6.565 21 N -0.589 5.589 22 C -0.305 4.305 23 H 0.120 0.880 24 C 0.042 3.958 25 N -0.880 5.880 26 Si 0.879 3.121 27 H -0.271 1.271 28 H -0.276 1.276 29 H -0.269 1.269 30 C 0.074 3.926 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.048 0.952 35 H 0.050 0.950 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.061 0.939 39 H 0.054 0.946 40 H 0.061 0.939 41 H 0.072 0.928 42 H 0.075 0.925 43 H 0.050 0.950 44 H 0.068 0.932 45 H 0.056 0.944 46 H 0.354 0.646 47 H 0.088 0.912 48 H 0.047 0.953 49 H 0.371 0.629 50 H 0.274 0.726 51 H 0.084 0.916 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.267 -12.793 24.676 32.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.272 6.272 4 C 0.020 3.980 5 H 0.105 0.895 6 C -0.168 4.168 7 C -0.207 4.207 8 C 0.304 3.696 9 O -0.396 6.396 10 N -0.354 5.354 11 C -0.023 4.023 12 C -0.116 4.116 13 H 0.117 0.883 14 C -0.197 4.197 15 C -0.032 4.032 16 H 0.109 0.891 17 N -0.283 5.283 18 C -0.087 4.087 19 C 0.235 3.765 20 O -0.447 6.447 21 N -0.229 5.229 22 C -0.434 4.434 23 H 0.137 0.863 24 C -0.162 4.162 25 N -0.520 5.520 26 Si 0.706 3.294 27 H -0.196 1.196 28 H -0.201 1.201 29 H -0.195 1.195 30 C -0.051 4.051 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.080 0.920 39 H 0.073 0.927 40 H 0.080 0.920 41 H 0.090 0.910 42 H 0.093 0.907 43 H 0.070 0.930 44 H 0.087 0.913 45 H 0.075 0.925 46 H 0.175 0.825 47 H 0.107 0.893 48 H 0.065 0.935 49 H 0.203 0.797 50 H 0.084 0.916 51 H 0.102 0.898 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -15.828 -12.445 24.502 31.713 hybrid contribution -1.536 -0.326 -1.162 1.953 sum -17.364 -12.771 23.340 31.770 Atomic orbital electron populations 1.21725 0.93327 1.02293 1.03431 1.22653 0.96150 0.83449 0.99971 1.88033 1.18252 1.26567 1.94321 1.21934 0.83769 0.99769 0.92563 0.89505 1.21836 1.01848 0.99943 0.93214 1.21734 1.02385 1.00064 0.96483 1.20725 0.80638 0.80132 0.88087 1.90734 1.49826 1.48291 1.50786 1.48711 1.04634 1.59100 1.22969 1.22423 0.85829 0.99685 0.94398 1.22104 0.97197 0.98648 0.93638 0.88314 1.21795 1.01714 0.94073 1.02099 1.22744 0.89032 0.97020 0.94414 0.89123 1.60174 1.45764 1.19421 1.02938 1.21786 0.97052 1.01369 0.88511 1.19658 0.88301 0.85990 0.82542 1.90569 1.38723 1.47449 1.67959 1.42206 1.27287 1.47939 1.05438 1.19425 1.06593 1.27925 0.89453 0.86251 1.25043 0.97396 0.97473 0.96245 1.69616 1.33120 1.41218 1.08064 0.86676 0.82174 0.80070 0.80499 1.19623 1.20146 1.19472 1.23297 0.96502 0.97227 0.88042 0.91535 0.91002 0.91778 0.93331 0.93136 0.89940 0.90346 0.91979 0.92735 0.91983 0.90968 0.90688 0.93044 0.91293 0.92530 0.82525 0.89336 0.93508 0.79672 0.91589 0.89783 0.90568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 10.28 37.16 0.38 -0.62 16 2 C 0.05 0.41 6.35 37.16 0.24 0.65 16 3 O -0.35 -3.75 9.09 -55.09 -0.50 -4.25 16 4 C 0.08 0.72 2.02 -27.88 -0.06 0.67 16 5 H 0.09 0.58 7.15 -51.93 -0.37 0.20 16 6 C -0.13 -0.91 5.55 -26.73 -0.15 -1.06 16 7 C -0.15 -0.79 9.81 37.16 0.36 -0.42 16 8 C 0.52 6.29 7.27 -10.98 -0.08 6.21 16 9 O -0.52 -8.78 16.72 -14.30 -0.24 -9.02 16 10 N -0.62 -6.30 3.29 -169.98 -0.56 -6.86 16 11 C 0.10 0.72 5.07 -2.98 -0.02 0.70 16 12 C -0.10 -0.82 3.34 -89.24 -0.30 -1.12 16 13 H 0.10 0.90 8.05 -51.93 -0.42 0.48 16 14 C -0.14 -1.07 8.89 37.15 0.33 -0.74 16 15 C 0.08 0.86 2.92 -66.03 -0.19 0.66 16 16 H 0.09 0.98 7.54 -51.93 -0.39 0.59 16 17 N -0.65 -9.15 5.95 -106.21 -0.63 -9.79 16 18 C 0.05 0.72 6.03 -4.98 -0.03 0.69 16 19 C 0.45 9.96 7.82 -10.99 -0.09 9.88 16 20 O -0.57 -14.81 15.78 5.54 0.09 -14.72 16 21 N -0.59 -13.91 5.09 -10.96 -0.06 -13.97 16 22 C -0.31 -8.60 10.16 -14.94 -0.15 -8.75 16 23 H 0.12 3.84 7.39 -52.48 -0.39 3.45 16 24 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 25 N -0.88 -25.68 13.96 55.50 0.77 -24.91 16 26 Si 0.88 19.40 27.74 -169.99 -4.71 14.69 16 27 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 28 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 29 H -0.27 -5.41 6.52 56.52 0.37 -5.05 16 30 C 0.07 0.82 6.65 -2.32 -0.02 0.81 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.08 0.47 5.61 -51.93 -0.29 0.18 16 37 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.37 7.86 -51.92 -0.41 -0.04 16 39 H 0.05 0.23 8.14 -51.93 -0.42 -0.20 16 40 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 41 H 0.07 0.44 7.23 -51.93 -0.38 0.06 16 42 H 0.07 0.40 6.93 -51.93 -0.36 0.04 16 43 H 0.05 0.37 8.13 -51.93 -0.42 -0.05 16 44 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.35 5.18 7.92 -39.29 -0.31 4.86 16 47 H 0.09 1.26 8.08 -51.93 -0.42 0.84 16 48 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 49 H 0.37 7.71 5.76 -40.82 -0.24 7.47 16 50 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 51 H 0.08 1.07 7.85 -51.93 -0.41 0.66 16 52 H 0.08 0.84 7.78 -51.93 -0.40 0.43 16 LS Contribution 417.16 15.07 6.29 6.29 Total: -1.00 -35.42 417.16 -8.43 -43.85 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: -9.02 Total: 10.08 kcal Atomic # 6 Polarization: 8.46 SS G_CDS: 0.14 Total: 8.60 kcal Atomic # 7 Polarization: -55.05 SS G_CDS: -0.47 Total: -55.53 kcal Atomic # 8 Polarization: -27.34 SS G_CDS: -0.65 Total: -27.99 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -4.71 Total: 14.69 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -35.42 -8.43 -43.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214255535.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.484 kcal (2) G-P(sol) polarization free energy of solvation -35.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds