Wall clock time and date at job start Wed Apr 1 2020 00:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42907 * 109.47095 * 2 1 4 4 C 1.42895 * 113.99685 * 181.61115 * 3 2 1 5 5 H 1.08993 * 109.47680 * 355.97324 * 4 3 2 6 6 C 1.53001 * 109.46817 * 235.97064 * 4 3 2 7 7 C 1.52995 * 109.47152 * 65.69615 * 6 4 3 8 8 C 1.50703 * 109.46998 * 115.97592 * 4 3 2 9 9 O 1.21279 * 120.00208 * 4.99714 * 8 4 3 10 10 N 1.34776 * 119.99721 * 184.99533 * 8 4 3 11 11 C 1.47483 * 127.03613 * 0.02562 * 10 8 4 12 12 C 1.54014 * 107.08485 * 154.51410 * 11 10 8 13 13 H 1.08995 * 110.32275 * 120.19976 * 12 11 10 14 14 C 1.52994 * 110.32842 * 242.41656 * 12 11 10 15 15 C 1.54617 * 105.04063 * 1.30850 * 12 11 10 16 16 H 1.09000 * 110.73990 * 263.50933 * 15 12 11 17 17 N 1.46903 * 110.73791 * 140.36596 * 15 12 11 18 18 C 1.46900 * 111.00018 * 154.99722 * 17 15 12 19 19 C 1.50699 * 109.47020 * 179.97438 * 18 17 15 20 20 O 1.21298 * 120.00297 * 0.02562 * 19 18 17 21 21 N 1.34776 * 120.00201 * 180.02562 * 19 18 17 22 22 C 1.37091 * 120.00384 * 180.02562 * 21 19 18 23 23 H 1.08004 * 119.99861 * 359.97438 * 22 21 19 24 24 C 1.38951 * 120.00508 * 180.02562 * 22 21 19 25 25 N 1.31402 * 120.00393 * 179.97438 * 24 22 21 26 26 Si 1.86804 * 119.99640 * 359.97438 * 24 22 21 27 27 H 1.48505 * 109.47020 * 90.00220 * 26 24 22 28 28 H 1.48498 * 109.47296 * 210.00013 * 26 24 22 29 29 H 1.48503 * 109.46995 * 330.00410 * 26 24 22 30 30 C 1.48118 * 127.03245 * 179.70507 * 10 8 4 31 31 H 1.08995 * 109.47211 * 60.00035 * 1 2 3 32 32 H 1.09000 * 109.46714 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46834 * 299.99783 * 1 2 3 34 34 H 1.09000 * 109.46834 * 240.00217 * 2 1 3 35 35 H 1.08995 * 109.47211 * 119.99965 * 2 1 3 36 36 H 1.09005 * 109.47299 * 185.69386 * 6 4 3 37 37 H 1.09003 * 109.47639 * 305.69290 * 6 4 3 38 38 H 1.09009 * 109.46996 * 299.42929 * 7 6 4 39 39 H 1.09000 * 109.47349 * 59.42483 * 7 6 4 40 40 H 1.08999 * 109.47394 * 179.43223 * 7 6 4 41 41 H 1.08996 * 109.91486 * 273.87883 * 11 10 8 42 42 H 1.08999 * 109.91350 * 35.16263 * 11 10 8 43 43 H 1.08998 * 109.47146 * 58.54549 * 14 12 11 44 44 H 1.09002 * 109.46972 * 178.54583 * 14 12 11 45 45 H 1.09005 * 109.47358 * 298.54707 * 14 12 11 46 46 H 1.00902 * 110.99845 * 278.95771 * 17 15 12 47 47 H 1.08994 * 109.47177 * 300.00013 * 18 17 15 48 48 H 1.09001 * 109.46830 * 60.00272 * 18 17 15 49 49 H 0.97003 * 119.99641 * 359.97438 * 21 19 18 50 50 H 0.97000 * 120.00074 * 179.97438 * 25 24 22 51 51 H 1.08999 * 110.65991 * 337.77525 * 30 10 8 52 52 H 1.08996 * 110.66141 * 100.88719 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4304 1.4603 -0.0367 5 1 3.8752 0.4665 0.0144 6 6 3.9066 2.2941 1.1545 7 6 3.6085 1.5437 2.4540 8 6 3.8481 2.1323 -1.3193 9 8 3.0074 2.5616 -2.0807 10 7 5.1560 2.2563 -1.6201 11 6 6.3007 1.7938 -0.8134 12 6 7.4736 1.5608 -1.7841 13 1 8.3181 2.1958 -1.5168 14 6 7.8893 0.0885 -1.7717 15 6 6.9263 1.9526 -3.1761 16 1 6.5811 1.0716 -3.7171 17 7 7.9456 2.6712 -3.9524 18 6 7.7038 2.5321 -5.3947 19 6 8.7666 3.2811 -6.1566 20 8 9.6399 3.8722 -5.5572 21 7 8.7468 3.2943 -7.5042 22 6 9.7139 3.9752 -8.1974 23 1 10.4915 4.5015 -7.6636 24 6 9.6933 3.9892 -9.5867 25 7 10.6199 4.6423 -10.2511 26 14 8.3480 3.0795 -10.5099 27 1 7.1964 3.9907 -10.7312 28 1 8.8723 2.6174 -11.8201 29 1 7.9058 1.9075 -9.7123 30 6 5.7375 2.8790 -2.8317 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 4.9800 2.4656 1.0720 37 1 3.3852 3.2513 1.1598 38 1 2.5342 1.3811 2.5414 39 1 4.1219 0.5822 2.4443 40 1 3.9569 2.1331 3.3021 41 1 6.5704 2.5548 -0.0812 42 1 6.0466 0.8621 -0.3081 43 1 7.0383 -0.5317 -2.0533 44 1 8.7020 -0.0656 -2.4815 45 1 8.2237 -0.1862 -0.7712 46 1 7.9857 3.6431 -3.6844 47 1 7.7351 1.4776 -5.6684 48 1 6.7242 2.9423 -5.6400 49 1 8.0487 2.8213 -7.9836 50 1 10.6057 4.6517 -11.2209 51 1 5.0115 2.8901 -3.6446 52 1 6.0890 3.8877 -2.6148 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001214255535.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:54:30 Heat of formation + Delta-G solvation = -140.133699 kcal Electronic energy + Delta-G solvation = -30419.608519 eV Core-core repulsion = 26225.143696 eV Total energy + Delta-G solvation = -4194.464823 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.55452 -40.37755 -39.59290 -38.42157 -36.29102 -35.70175 -34.69818 -33.76091 -33.36811 -31.84316 -30.52333 -28.65634 -27.51443 -27.01840 -25.52512 -23.84531 -23.58344 -22.64002 -21.53146 -21.16753 -20.62947 -20.22445 -18.51065 -18.07815 -17.73910 -17.20569 -17.02695 -16.66467 -16.57623 -16.27764 -15.82589 -15.52212 -15.10713 -15.04804 -14.96925 -14.68263 -14.59116 -14.40424 -14.16813 -14.06077 -13.92974 -13.40945 -13.34701 -13.27809 -13.12798 -13.02702 -12.99135 -12.89204 -12.76981 -12.42787 -12.26591 -12.16130 -12.03884 -11.98814 -11.89441 -11.77413 -11.57093 -11.52820 -11.24280 -10.44925 -10.38126 -10.26193 -9.89775 -9.33818 -8.42467 -6.03093 1.29024 1.33947 1.42705 1.44192 1.65262 1.93693 2.21316 2.63290 2.76609 3.13879 3.23863 3.41077 3.60310 3.74872 3.77710 3.82916 3.92480 4.11930 4.16169 4.19211 4.24138 4.27910 4.33022 4.37471 4.45615 4.47795 4.53089 4.53733 4.66180 4.74678 4.78258 4.80827 4.85061 4.89762 4.98200 5.01048 5.08966 5.15185 5.18118 5.25674 5.33918 5.40320 5.47265 5.52588 5.89165 6.00925 6.08359 6.29515 6.43672 6.57848 6.86646 7.02957 7.38200 7.93973 8.74955 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.017501 B = 0.002098 C = 0.001962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.479506 B =13345.051124 C =14266.108960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.047 3.953 3 O -0.383 6.383 4 C 0.085 3.915 5 H 0.117 0.883 6 C -0.127 4.127 7 C -0.145 4.145 8 C 0.509 3.491 9 O -0.581 6.581 10 N -0.612 5.612 11 C 0.100 3.900 12 C -0.091 4.091 13 H 0.093 0.907 14 C -0.136 4.136 15 C 0.086 3.914 16 H 0.096 0.904 17 N -0.661 5.661 18 C 0.059 3.941 19 C 0.450 3.550 20 O -0.611 6.611 21 N -0.592 5.592 22 C -0.327 4.327 23 H 0.057 0.943 24 C -0.015 4.015 25 N -0.933 5.933 26 Si 0.962 3.038 27 H -0.260 1.260 28 H -0.274 1.274 29 H -0.232 1.232 30 C 0.073 3.927 31 H 0.045 0.955 32 H 0.094 0.906 33 H 0.064 0.936 34 H 0.046 0.954 35 H 0.077 0.923 36 H 0.098 0.902 37 H 0.056 0.944 38 H 0.052 0.948 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.090 0.910 42 H 0.105 0.895 43 H 0.058 0.942 44 H 0.049 0.951 45 H 0.077 0.923 46 H 0.348 0.652 47 H 0.115 0.885 48 H 0.072 0.928 49 H 0.389 0.611 50 H 0.279 0.721 51 H 0.064 0.936 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.121 -16.047 26.485 35.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.029 4.029 3 O -0.301 6.301 4 C 0.023 3.977 5 H 0.135 0.865 6 C -0.164 4.164 7 C -0.202 4.202 8 C 0.299 3.701 9 O -0.460 6.460 10 N -0.347 5.347 11 C -0.022 4.022 12 C -0.111 4.111 13 H 0.111 0.889 14 C -0.193 4.193 15 C -0.026 4.026 16 H 0.114 0.886 17 N -0.293 5.293 18 C -0.073 4.073 19 C 0.238 3.762 20 O -0.495 6.495 21 N -0.233 5.233 22 C -0.457 4.457 23 H 0.076 0.924 24 C -0.214 4.214 25 N -0.573 5.573 26 Si 0.783 3.217 27 H -0.184 1.184 28 H -0.199 1.199 29 H -0.155 1.155 30 C -0.052 4.052 31 H 0.064 0.936 32 H 0.112 0.888 33 H 0.083 0.917 34 H 0.064 0.936 35 H 0.095 0.905 36 H 0.116 0.884 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.108 0.892 42 H 0.123 0.877 43 H 0.077 0.923 44 H 0.068 0.932 45 H 0.096 0.904 46 H 0.168 0.832 47 H 0.133 0.867 48 H 0.089 0.911 49 H 0.224 0.776 50 H 0.089 0.911 51 H 0.083 0.917 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -17.666 -15.733 26.361 35.419 hybrid contribution -0.860 0.762 -1.626 1.991 sum -18.526 -14.971 24.735 34.339 Atomic orbital electron populations 1.21757 0.93139 1.03437 1.02420 1.22862 0.96476 0.82453 1.01067 1.88015 1.19320 1.28466 1.94304 1.22087 0.83398 1.01056 0.91119 0.86515 1.21846 1.02376 0.98867 0.93348 1.21712 1.02076 1.00888 0.95531 1.21491 0.80498 0.79473 0.88653 1.90700 1.51483 1.50994 1.52825 1.48762 1.04965 1.58199 1.22806 1.22643 0.83935 1.01670 0.93939 1.22079 0.97470 0.99325 0.92224 0.88871 1.21772 1.01368 0.93219 1.02945 1.22768 0.88115 0.96372 0.95299 0.88599 1.60223 1.47432 1.19418 1.02214 1.21702 0.95168 1.01683 0.88757 1.20897 0.88554 0.84580 0.82191 1.90548 1.40971 1.49124 1.68895 1.42048 1.27007 1.48238 1.06029 1.19006 1.07077 1.29366 0.90205 0.92446 1.26091 1.00433 0.98102 0.96735 1.69793 1.35778 1.42995 1.08768 0.85396 0.78020 0.79642 0.78677 1.18427 1.19921 1.15501 1.23206 0.96209 0.97537 0.88263 0.93600 0.88778 0.91710 0.93584 0.90458 0.88366 0.92547 0.92913 0.90801 0.91183 0.89191 0.87720 0.92271 0.93154 0.90378 0.83173 0.86697 0.91053 0.77570 0.91144 0.91710 0.90732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 10.28 71.98 0.74 -1.09 16 2 C 0.05 0.63 6.35 71.98 0.46 1.08 16 3 O -0.38 -7.69 9.09 -129.99 -1.18 -8.87 16 4 C 0.08 1.32 2.02 29.85 0.06 1.38 16 5 H 0.12 1.08 7.15 -2.39 -0.02 1.06 16 6 C -0.13 -1.46 5.55 30.59 0.17 -1.29 16 7 C -0.14 -1.07 9.81 71.98 0.71 -0.36 16 8 C 0.51 11.89 7.27 87.66 0.64 12.53 16 9 O -0.58 -19.94 16.72 15.96 0.27 -19.67 16 10 N -0.61 -11.34 3.29 -810.09 -2.67 -14.01 16 11 C 0.10 1.08 5.07 86.53 0.44 1.51 16 12 C -0.09 -1.29 3.34 -9.90 -0.03 -1.33 16 13 H 0.09 1.48 8.05 -2.39 -0.02 1.46 16 14 C -0.14 -1.61 8.89 71.98 0.64 -0.97 16 15 C 0.09 1.67 2.92 46.01 0.13 1.80 16 16 H 0.10 1.81 7.54 -2.39 -0.02 1.79 16 17 N -0.66 -17.79 5.95 -489.94 -2.92 -20.70 16 18 C 0.06 1.76 6.03 85.56 0.52 2.28 16 19 C 0.45 20.00 7.82 87.66 0.69 20.68 16 20 O -0.61 -33.19 15.78 -3.09 -0.05 -33.24 16 21 N -0.59 -27.87 5.09 -306.98 -1.56 -29.43 16 22 C -0.33 -19.18 10.16 84.04 0.85 -18.33 16 23 H 0.06 3.99 7.39 -2.91 -0.02 3.97 16 24 C -0.01 -0.83 5.50 84.93 0.47 -0.36 16 25 N -0.93 -56.39 13.96 21.66 0.30 -56.09 16 26 Si 0.96 39.20 27.74 68.60 1.90 41.10 16 27 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 28 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 29 H -0.23 -7.96 6.52 99.48 0.65 -7.31 16 30 C 0.07 1.55 6.65 86.61 0.58 2.13 16 31 H 0.04 0.73 8.14 -2.39 -0.02 0.72 16 32 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.10 0.79 5.61 -2.38 -0.01 0.77 16 37 H 0.06 0.90 8.14 -2.39 -0.02 0.89 16 38 H 0.05 0.50 7.86 -2.38 -0.02 0.49 16 39 H 0.07 0.28 8.14 -2.39 -0.02 0.26 16 40 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 41 H 0.09 0.73 7.23 -2.39 -0.02 0.71 16 42 H 0.10 0.57 6.93 -2.39 -0.02 0.56 16 43 H 0.06 0.63 8.13 -2.39 -0.02 0.61 16 44 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 45 H 0.08 0.61 8.14 -2.38 -0.02 0.59 16 46 H 0.35 10.09 7.92 -89.69 -0.71 9.38 16 47 H 0.12 2.89 8.08 -2.39 -0.02 2.87 16 48 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 49 H 0.39 15.28 5.76 -92.71 -0.53 14.75 16 50 H 0.28 15.43 8.31 -92.71 -0.77 14.66 16 51 H 0.06 1.64 7.85 -2.39 -0.02 1.62 16 52 H 0.07 1.61 7.78 -2.39 -0.02 1.59 16 Total: -1.00 -84.80 417.16 0.76 -84.04 By element: Atomic # 1 Polarization: 37.61 SS G_CDS: -0.38 Total: 37.22 kcal Atomic # 6 Polarization: 12.61 SS G_CDS: 7.05 Total: 19.66 kcal Atomic # 7 Polarization: -113.39 SS G_CDS: -6.84 Total: -120.23 kcal Atomic # 8 Polarization: -60.82 SS G_CDS: -0.96 Total: -61.78 kcal Atomic # 14 Polarization: 39.20 SS G_CDS: 1.90 Total: 41.10 kcal Total: -84.80 0.76 -84.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214255535.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.098 kcal (2) G-P(sol) polarization free energy of solvation -84.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds