Wall clock time and date at job start Wed Apr 1 2020 00:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42902 * 109.47527 * 2 1 4 4 C 1.42890 * 114.00507 * 181.56658 * 3 2 1 5 5 H 1.09002 * 109.47326 * 329.43586 * 4 3 2 6 6 C 1.53002 * 109.47448 * 209.43170 * 4 3 2 7 7 C 1.52995 * 109.46989 * 65.28174 * 6 4 3 8 8 C 1.50698 * 109.47255 * 89.42741 * 4 3 2 9 9 O 1.21282 * 120.00193 * 5.00603 * 8 4 3 10 10 N 1.34771 * 120.00429 * 184.99777 * 8 4 3 11 11 C 1.46501 * 120.00727 * 180.02562 * 10 8 4 12 12 C 1.53125 * 109.52209 * 274.68861 * 11 10 8 13 13 C 1.53034 * 109.27558 * 182.43617 * 12 11 10 14 14 N 1.46841 * 109.52700 * 59.17953 * 13 12 11 15 15 C 1.46903 * 111.00253 * 174.15804 * 14 13 12 16 16 C 1.50693 * 109.47091 * 294.20866 * 15 14 13 17 17 O 1.21299 * 120.00112 * 359.97438 * 16 15 14 18 18 N 1.34775 * 119.99929 * 179.97438 * 16 15 14 19 19 C 1.37100 * 120.00115 * 180.02562 * 18 16 15 20 20 H 1.08007 * 119.99693 * 359.97438 * 19 18 16 21 21 C 1.38945 * 120.00195 * 180.02562 * 19 18 16 22 22 N 1.31414 * 119.99797 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00115 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46784 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47262 * 120.00078 * 23 21 19 26 26 H 1.48507 * 109.46880 * 239.99849 * 23 21 19 27 27 C 1.46852 * 111.19736 * 298.25760 * 14 13 12 28 28 C 1.53032 * 109.52442 * 61.73803 * 27 14 13 29 29 H 1.09002 * 109.47290 * 300.00339 * 1 2 3 30 30 H 1.09004 * 109.46959 * 60.00232 * 1 2 3 31 31 H 1.08999 * 109.47240 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46959 * 119.99768 * 2 1 3 33 33 H 1.09002 * 109.47290 * 239.99661 * 2 1 3 34 34 H 1.08999 * 109.46903 * 185.28460 * 6 4 3 35 35 H 1.08994 * 109.46750 * 305.28195 * 6 4 3 36 36 H 1.08999 * 109.47253 * 174.71284 * 7 6 4 37 37 H 1.08999 * 109.47382 * 294.71459 * 7 6 4 38 38 H 1.08999 * 109.47311 * 54.71284 * 7 6 4 39 39 H 0.97006 * 119.99760 * 0.02562 * 10 8 4 40 40 H 1.09005 * 109.52086 * 34.87377 * 11 10 8 41 41 H 1.09000 * 109.50079 * 302.37586 * 12 11 10 42 42 H 1.09001 * 109.50086 * 62.49330 * 12 11 10 43 43 H 1.09000 * 109.46424 * 299.15777 * 13 12 11 44 44 H 1.09005 * 109.45135 * 179.18950 * 13 12 11 45 45 H 1.09001 * 109.47136 * 54.21027 * 15 14 13 46 46 H 1.09001 * 109.47243 * 174.20588 * 15 14 13 47 47 H 0.96999 * 120.00223 * 0.02562 * 18 16 15 48 48 H 0.97005 * 119.99741 * 179.97438 * 22 21 19 49 49 H 1.09006 * 109.45832 * 301.72351 * 27 14 13 50 50 H 1.08992 * 109.45464 * 181.75503 * 27 14 13 51 51 H 1.08996 * 109.50298 * 180.88000 * 28 27 14 52 52 H 1.09003 * 109.50321 * 60.75973 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4304 1.4603 -0.0357 5 1 3.8757 0.6022 0.4678 6 6 3.8579 2.7465 0.6741 7 6 3.5026 2.6517 2.1592 8 6 3.8955 1.4988 -1.4686 9 8 3.0837 1.5274 -2.3691 10 7 5.2136 1.5017 -1.7494 11 6 5.6659 1.5397 -3.1424 12 6 5.7061 0.1167 -3.7063 13 6 6.2368 0.1567 -5.1411 14 7 7.5825 0.7443 -5.1505 15 6 8.1791 0.6723 -6.4909 16 6 8.4093 -0.7702 -6.8615 17 8 8.1066 -1.6516 -6.0851 18 7 8.9515 -1.0809 -8.0556 19 6 9.1605 -2.3932 -8.3930 20 1 8.8909 -3.1780 -7.7016 21 6 9.7200 -2.7135 -9.6238 22 7 10.0484 -1.7586 -10.4647 23 14 10.0053 -4.5016 -10.0831 24 1 9.5540 -5.3763 -8.9712 25 1 9.2370 -4.8257 -11.3118 26 1 11.4526 -4.7240 -10.3312 27 6 7.5614 2.1274 -4.6574 28 6 7.0702 2.1462 -3.2082 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 4.9342 2.8807 0.5658 35 1 3.3394 3.5961 0.2300 36 1 3.8904 3.5259 2.6821 37 1 2.4192 2.6119 2.2718 38 1 3.9452 1.7496 2.5818 39 1 5.8630 1.4786 -1.0292 40 1 4.9789 2.1469 -3.7319 41 1 6.3628 -0.4996 -3.0924 42 1 4.7010 -0.3051 -3.7016 43 1 5.5720 0.7618 -5.7576 44 1 6.2801 -0.8566 -5.5405 45 1 7.5041 1.1299 -7.2142 46 1 9.1303 1.2045 -6.4944 47 1 9.1940 -0.3761 -8.6763 48 1 10.4394 -1.9822 -11.3239 49 1 6.8904 2.7233 -5.2761 50 1 8.5669 2.5453 -4.7056 51 1 7.0399 3.1744 -2.8476 52 1 7.7484 1.5618 -2.5864 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226342643.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:56:58 Heat of formation + Delta-G solvation = -127.364495 kcal Electronic energy + Delta-G solvation = -30278.901475 eV Core-core repulsion = 26084.990366 eV Total energy + Delta-G solvation = -4193.911109 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.49287 -39.17801 -38.07133 -37.28254 -35.03301 -34.30587 -33.81743 -31.66969 -31.15626 -31.13614 -30.71209 -27.94030 -26.66563 -24.50937 -23.28718 -23.11541 -22.75731 -22.14002 -20.58186 -19.88360 -19.17806 -17.84933 -17.78527 -17.45658 -16.25893 -15.93427 -15.58096 -15.53730 -15.02013 -14.93759 -14.63503 -14.52788 -14.38313 -14.18922 -13.88067 -13.75409 -13.44412 -13.19570 -13.08260 -12.84767 -12.71873 -12.44390 -12.30073 -12.11714 -11.88337 -11.70875 -11.67737 -11.51373 -11.48794 -11.17532 -11.15669 -11.09633 -11.06839 -10.65184 -10.59533 -10.48957 -10.33620 -10.21618 -9.49102 -9.41344 -9.12635 -8.42162 -7.96672 -7.82954 -6.40961 -3.81571 2.41671 2.82093 3.16689 3.27195 3.34336 3.36593 3.91296 3.99402 4.25179 4.33389 4.45006 4.51486 4.67996 4.77724 4.81199 4.91463 4.93611 5.05060 5.07091 5.08662 5.10406 5.26202 5.29301 5.34646 5.38892 5.44670 5.50494 5.56505 5.64405 5.65283 5.66142 5.69988 5.81616 5.83926 5.84089 5.86134 5.98225 6.01272 6.10801 6.26222 6.31332 6.46789 6.54736 6.74851 7.28085 7.35071 7.43708 7.56259 8.06139 8.07771 8.62918 9.19241 9.55773 10.07554 10.76880 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.019580 B = 0.001926 C = 0.001811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.707034 B =14537.732490 C =15458.296104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.055 3.945 3 O -0.355 6.355 4 C 0.076 3.924 5 H 0.085 0.915 6 C -0.115 4.115 7 C -0.149 4.149 8 C 0.487 3.513 9 O -0.523 6.523 10 N -0.723 5.723 11 C 0.143 3.857 12 C -0.119 4.119 13 C 0.055 3.945 14 N -0.516 5.516 15 C 0.046 3.954 16 C 0.444 3.556 17 O -0.577 6.577 18 N -0.565 5.565 19 C -0.297 4.297 20 H 0.103 0.897 21 C 0.021 3.979 22 N -0.902 5.902 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.282 1.282 27 C 0.058 3.942 28 C -0.119 4.119 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.048 0.952 33 H 0.052 0.948 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.059 0.941 37 H 0.063 0.937 38 H 0.054 0.946 39 H 0.398 0.602 40 H 0.084 0.916 41 H 0.074 0.926 42 H 0.065 0.935 43 H 0.023 0.977 44 H 0.106 0.894 45 H 0.047 0.953 46 H 0.089 0.911 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.032 0.968 50 H 0.079 0.921 51 H 0.070 0.930 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.844 11.082 22.249 27.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.022 4.022 3 O -0.272 6.272 4 C 0.014 3.986 5 H 0.103 0.897 6 C -0.153 4.153 7 C -0.206 4.206 8 C 0.272 3.728 9 O -0.398 6.398 10 N -0.376 5.376 11 C 0.038 3.962 12 C -0.158 4.158 13 C -0.073 4.073 14 N -0.241 5.241 15 C -0.085 4.085 16 C 0.229 3.771 17 O -0.461 6.461 18 N -0.202 5.202 19 C -0.427 4.427 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.543 5.543 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.071 4.071 28 C -0.158 4.158 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.099 0.901 35 H 0.096 0.904 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.073 0.927 39 H 0.232 0.768 40 H 0.102 0.898 41 H 0.093 0.907 42 H 0.084 0.916 43 H 0.041 0.959 44 H 0.125 0.875 45 H 0.065 0.935 46 H 0.107 0.893 47 H 0.225 0.775 48 H 0.080 0.920 49 H 0.050 0.950 50 H 0.097 0.903 51 H 0.088 0.912 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -11.432 10.372 22.250 27.080 hybrid contribution 0.428 -0.197 -1.071 1.170 sum -11.003 10.174 21.179 25.945 Atomic orbital electron populations 1.21706 0.93408 1.02311 1.03160 1.22585 0.96032 0.83433 1.00116 1.87985 1.18179 1.26849 1.94223 1.22085 0.83904 1.00522 0.92121 0.89705 1.21579 1.01372 0.96033 0.96335 1.21721 1.02577 1.01800 0.94515 1.21425 0.82660 0.76478 0.92205 1.90727 1.53292 1.47909 1.47861 1.46169 1.06931 1.75497 1.09006 1.21129 0.95628 0.97725 0.81672 1.21904 1.01106 0.95861 0.96923 1.22209 0.87171 1.02414 0.95470 1.61542 1.21859 1.16772 1.23895 1.21833 0.99985 0.97259 0.89441 1.19749 0.84276 0.89610 0.83417 1.90483 1.55601 1.49198 1.50852 1.41880 1.54697 1.08778 1.14817 1.19742 1.38030 0.83821 1.01077 0.87875 1.25262 0.97181 0.99805 0.95794 1.69624 1.43060 1.32414 1.09250 0.85806 0.77890 0.82162 0.78517 1.19239 1.20797 1.20775 1.22029 1.00892 0.89732 0.94444 1.21825 0.95343 1.00752 0.97846 0.91984 0.91560 0.91044 0.93372 0.92958 0.90119 0.90363 0.92201 0.91794 0.92685 0.76782 0.89839 0.90742 0.91596 0.95855 0.87549 0.93456 0.89304 0.77501 0.91957 0.94995 0.90278 0.91172 0.90345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 10.28 37.16 0.38 -0.78 16 2 C 0.05 0.50 6.44 37.16 0.24 0.74 16 3 O -0.35 -3.81 9.17 -55.09 -0.51 -4.32 16 4 C 0.08 0.66 2.51 -27.88 -0.07 0.59 16 5 H 0.09 0.56 7.81 -51.93 -0.41 0.16 16 6 C -0.12 -0.75 5.61 -26.73 -0.15 -0.90 16 7 C -0.15 -0.81 9.76 37.16 0.36 -0.45 16 8 C 0.49 5.66 7.09 -10.99 -0.08 5.59 16 9 O -0.52 -8.49 16.17 -14.30 -0.23 -8.73 16 10 N -0.72 -6.96 4.98 -53.68 -0.27 -7.22 16 11 C 0.14 1.68 2.52 -67.81 -0.17 1.51 16 12 C -0.12 -1.71 5.67 -26.65 -0.15 -1.86 16 13 C 0.06 0.93 5.10 -3.84 -0.02 0.91 16 14 N -0.52 -8.46 4.40 -236.12 -1.04 -9.50 16 15 C 0.05 0.82 5.45 -4.98 -0.03 0.79 16 16 C 0.44 10.43 7.46 -10.99 -0.08 10.35 16 17 O -0.58 -15.39 13.90 5.54 0.08 -15.32 16 18 N -0.56 -14.30 5.29 -10.96 -0.06 -14.36 16 19 C -0.30 -8.27 9.68 -14.93 -0.14 -8.42 16 20 H 0.10 3.02 7.16 -52.48 -0.38 2.64 16 21 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 22 N -0.90 -24.59 13.05 55.50 0.72 -23.87 16 23 Si 0.93 21.11 29.55 -169.99 -5.02 16.09 16 24 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 27 C 0.06 0.71 5.46 -3.83 -0.02 0.69 16 28 C -0.12 -1.21 5.57 -26.66 -0.15 -1.36 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.05 0.34 8.11 -51.93 -0.42 -0.08 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.08 0.38 7.76 -51.93 -0.40 -0.03 16 35 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.06 0.41 7.97 -51.93 -0.41 0.00 16 38 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 39 H 0.40 2.61 8.31 -40.82 -0.34 2.27 16 40 H 0.08 1.14 7.58 -51.93 -0.39 0.75 16 41 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 43 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.11 2.18 5.78 -51.93 -0.30 1.88 16 45 H 0.05 0.79 8.12 -51.93 -0.42 0.36 16 46 H 0.09 1.41 7.99 -51.93 -0.41 0.99 16 47 H 0.39 9.50 7.90 -40.82 -0.32 9.17 16 48 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 49 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 50 H 0.08 0.88 8.01 -51.93 -0.42 0.46 16 51 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 52 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 418.60 15.07 6.31 6.31 Total: -1.00 -33.99 418.60 -9.45 -43.43 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: -9.26 Total: 9.62 kcal Atomic # 6 Polarization: 8.03 SS G_CDS: -0.18 Total: 7.85 kcal Atomic # 7 Polarization: -54.31 SS G_CDS: -0.64 Total: -54.95 kcal Atomic # 8 Polarization: -27.70 SS G_CDS: -0.66 Total: -28.36 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -33.99 -9.45 -43.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226342643.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.931 kcal (2) G-P(sol) polarization free energy of solvation -33.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds