Wall clock time and date at job start Wed Apr 1 2020 00:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42902 * 109.47527 * 2 1 4 4 C 1.42890 * 114.00507 * 181.56658 * 3 2 1 5 5 H 1.09002 * 109.47326 * 329.43586 * 4 3 2 6 6 C 1.53002 * 109.47448 * 209.43170 * 4 3 2 7 7 C 1.52995 * 109.46989 * 65.28174 * 6 4 3 8 8 C 1.50698 * 109.47255 * 89.42741 * 4 3 2 9 9 O 1.21282 * 120.00193 * 5.00603 * 8 4 3 10 10 N 1.34771 * 120.00429 * 184.99777 * 8 4 3 11 11 C 1.46501 * 120.00727 * 180.02562 * 10 8 4 12 12 C 1.53125 * 109.52209 * 274.68861 * 11 10 8 13 13 C 1.53034 * 109.27558 * 182.43617 * 12 11 10 14 14 N 1.46841 * 109.52700 * 59.17953 * 13 12 11 15 15 C 1.46903 * 111.00253 * 174.15804 * 14 13 12 16 16 C 1.50693 * 109.47091 * 294.20866 * 15 14 13 17 17 O 1.21299 * 120.00112 * 359.97438 * 16 15 14 18 18 N 1.34775 * 119.99929 * 179.97438 * 16 15 14 19 19 C 1.37100 * 120.00115 * 180.02562 * 18 16 15 20 20 H 1.08007 * 119.99693 * 359.97438 * 19 18 16 21 21 C 1.38945 * 120.00195 * 180.02562 * 19 18 16 22 22 N 1.31414 * 119.99797 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00115 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46784 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47262 * 120.00078 * 23 21 19 26 26 H 1.48507 * 109.46880 * 239.99849 * 23 21 19 27 27 C 1.46852 * 111.19736 * 298.25760 * 14 13 12 28 28 C 1.53032 * 109.52442 * 61.73803 * 27 14 13 29 29 H 1.09002 * 109.47290 * 300.00339 * 1 2 3 30 30 H 1.09004 * 109.46959 * 60.00232 * 1 2 3 31 31 H 1.08999 * 109.47240 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46959 * 119.99768 * 2 1 3 33 33 H 1.09002 * 109.47290 * 239.99661 * 2 1 3 34 34 H 1.08999 * 109.46903 * 185.28460 * 6 4 3 35 35 H 1.08994 * 109.46750 * 305.28195 * 6 4 3 36 36 H 1.08999 * 109.47253 * 174.71284 * 7 6 4 37 37 H 1.08999 * 109.47382 * 294.71459 * 7 6 4 38 38 H 1.08999 * 109.47311 * 54.71284 * 7 6 4 39 39 H 0.97006 * 119.99760 * 0.02562 * 10 8 4 40 40 H 1.09005 * 109.52086 * 34.87377 * 11 10 8 41 41 H 1.09000 * 109.50079 * 302.37586 * 12 11 10 42 42 H 1.09001 * 109.50086 * 62.49330 * 12 11 10 43 43 H 1.09000 * 109.46424 * 299.15777 * 13 12 11 44 44 H 1.09005 * 109.45135 * 179.18950 * 13 12 11 45 45 H 1.09001 * 109.47136 * 54.21027 * 15 14 13 46 46 H 1.09001 * 109.47243 * 174.20588 * 15 14 13 47 47 H 0.96999 * 120.00223 * 0.02562 * 18 16 15 48 48 H 0.97005 * 119.99741 * 179.97438 * 22 21 19 49 49 H 1.09006 * 109.45832 * 301.72351 * 27 14 13 50 50 H 1.08992 * 109.45464 * 181.75503 * 27 14 13 51 51 H 1.08996 * 109.50298 * 180.88000 * 28 27 14 52 52 H 1.09003 * 109.50321 * 60.75973 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4304 1.4603 -0.0357 5 1 3.8757 0.6022 0.4678 6 6 3.8579 2.7465 0.6741 7 6 3.5026 2.6517 2.1592 8 6 3.8955 1.4988 -1.4686 9 8 3.0837 1.5274 -2.3691 10 7 5.2136 1.5017 -1.7494 11 6 5.6659 1.5397 -3.1424 12 6 5.7061 0.1167 -3.7063 13 6 6.2368 0.1567 -5.1411 14 7 7.5825 0.7443 -5.1505 15 6 8.1791 0.6723 -6.4909 16 6 8.4093 -0.7702 -6.8615 17 8 8.1066 -1.6516 -6.0851 18 7 8.9515 -1.0809 -8.0556 19 6 9.1605 -2.3932 -8.3930 20 1 8.8909 -3.1780 -7.7016 21 6 9.7200 -2.7135 -9.6238 22 7 10.0484 -1.7586 -10.4647 23 14 10.0053 -4.5016 -10.0831 24 1 9.5540 -5.3763 -8.9712 25 1 9.2370 -4.8257 -11.3118 26 1 11.4526 -4.7240 -10.3312 27 6 7.5614 2.1274 -4.6574 28 6 7.0702 2.1462 -3.2082 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 4.9342 2.8807 0.5658 35 1 3.3394 3.5961 0.2300 36 1 3.8904 3.5259 2.6821 37 1 2.4192 2.6119 2.2718 38 1 3.9452 1.7496 2.5818 39 1 5.8630 1.4786 -1.0292 40 1 4.9789 2.1469 -3.7319 41 1 6.3628 -0.4996 -3.0924 42 1 4.7010 -0.3051 -3.7016 43 1 5.5720 0.7618 -5.7576 44 1 6.2801 -0.8566 -5.5405 45 1 7.5041 1.1299 -7.2142 46 1 9.1303 1.2045 -6.4944 47 1 9.1940 -0.3761 -8.6763 48 1 10.4394 -1.9822 -11.3239 49 1 6.8904 2.7233 -5.2761 50 1 8.5669 2.5453 -4.7056 51 1 7.0399 3.1744 -2.8476 52 1 7.7484 1.5618 -2.5864 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226342643.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:56:57 Heat of formation + Delta-G solvation = -152.284683 kcal Electronic energy + Delta-G solvation = -30279.982095 eV Core-core repulsion = 26084.990366 eV Total energy + Delta-G solvation = -4194.991729 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.42866 -40.55363 -39.36917 -38.42187 -36.24929 -35.75938 -34.90674 -33.31843 -32.61662 -31.83476 -31.77643 -29.06744 -27.82586 -26.24246 -24.26512 -24.13550 -23.66793 -22.84262 -21.49474 -21.06604 -20.88011 -19.87237 -18.63596 -18.22351 -17.71625 -17.16932 -16.73410 -16.50663 -16.39158 -16.27802 -15.93491 -15.56110 -15.42852 -15.25698 -15.19690 -14.94688 -14.73591 -14.37171 -14.30187 -13.78501 -13.51341 -13.41556 -13.30105 -13.19575 -12.99695 -12.95168 -12.86865 -12.79163 -12.42588 -12.33125 -12.28670 -12.20140 -12.11741 -12.01846 -11.85868 -11.71898 -11.58659 -11.44825 -11.39024 -10.35434 -10.23664 -10.08005 -9.97494 -9.21638 -8.46534 -5.94817 1.35852 1.40872 1.52690 1.55014 2.00227 2.06135 2.28096 2.68151 2.76084 3.20289 3.37681 3.58959 3.75866 3.82826 3.89428 3.93112 4.06615 4.13007 4.18865 4.27709 4.29521 4.35473 4.35847 4.43569 4.46824 4.51608 4.55453 4.55905 4.64076 4.74181 4.78171 4.85893 4.89934 4.97914 4.99606 5.06955 5.10473 5.10997 5.17878 5.23282 5.28675 5.41306 5.44206 5.47137 5.88485 6.04634 6.07206 6.24008 6.55568 6.61367 7.13688 7.22242 7.57455 8.13461 8.71119 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.019580 B = 0.001926 C = 0.001811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.707034 B =14537.732490 C =15458.296104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.050 3.950 3 O -0.375 6.375 4 C 0.076 3.924 5 H 0.111 0.889 6 C -0.111 4.111 7 C -0.145 4.145 8 C 0.484 3.516 9 O -0.577 6.577 10 N -0.706 5.706 11 C 0.151 3.849 12 C -0.109 4.109 13 C 0.061 3.939 14 N -0.529 5.529 15 C 0.057 3.943 16 C 0.441 3.559 17 O -0.614 6.614 18 N -0.576 5.576 19 C -0.330 4.330 20 H 0.078 0.922 21 C -0.015 4.015 22 N -0.921 5.921 23 Si 0.992 3.008 24 H -0.274 1.274 25 H -0.272 1.272 26 H -0.270 1.270 27 C 0.054 3.946 28 C -0.109 4.109 29 H 0.071 0.929 30 H 0.046 0.954 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.031 0.969 34 H 0.105 0.895 35 H 0.061 0.939 36 H 0.071 0.929 37 H 0.049 0.951 38 H 0.067 0.933 39 H 0.417 0.583 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.048 0.952 43 H 0.023 0.977 44 H 0.061 0.939 45 H 0.063 0.937 46 H 0.117 0.883 47 H 0.396 0.604 48 H 0.277 0.723 49 H 0.038 0.962 50 H 0.101 0.899 51 H 0.103 0.897 52 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.682 12.340 24.080 28.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.026 4.026 3 O -0.293 6.293 4 C 0.014 3.986 5 H 0.129 0.871 6 C -0.149 4.149 7 C -0.203 4.203 8 C 0.271 3.729 9 O -0.456 6.456 10 N -0.360 5.360 11 C 0.046 3.954 12 C -0.148 4.148 13 C -0.068 4.068 14 N -0.254 5.254 15 C -0.074 4.074 16 C 0.228 3.772 17 O -0.500 6.500 18 N -0.213 5.213 19 C -0.459 4.459 20 H 0.096 0.904 21 C -0.214 4.214 22 N -0.562 5.562 23 Si 0.816 3.184 24 H -0.199 1.199 25 H -0.197 1.197 26 H -0.195 1.195 27 C -0.074 4.074 28 C -0.147 4.147 29 H 0.090 0.910 30 H 0.065 0.935 31 H 0.106 0.894 32 H 0.092 0.908 33 H 0.049 0.951 34 H 0.124 0.876 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.068 0.932 38 H 0.086 0.914 39 H 0.255 0.745 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.066 0.934 43 H 0.042 0.958 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.135 0.865 47 H 0.230 0.770 48 H 0.086 0.914 49 H 0.057 0.943 50 H 0.119 0.881 51 H 0.121 0.879 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.236 11.664 24.113 28.676 hybrid contribution 0.038 -0.583 -1.615 1.717 sum -10.199 11.081 22.498 27.074 Atomic orbital electron populations 1.21722 0.92786 1.03279 1.02624 1.22708 0.96726 0.82978 1.00219 1.87972 1.19499 1.27752 1.94109 1.22317 0.83188 1.02782 0.90269 0.87107 1.21627 1.02613 0.94021 0.96623 1.21698 1.01836 1.03013 0.93710 1.22095 0.82620 0.75130 0.93086 1.90706 1.54741 1.50467 1.49648 1.45983 1.06899 1.74379 1.08729 1.20904 0.96685 0.95388 0.82472 1.21768 0.99630 0.97837 0.95589 1.22003 0.88029 0.99984 0.96781 1.61528 1.21113 1.19782 1.22972 1.21735 1.01902 0.93003 0.90780 1.20809 0.82216 0.91940 0.82215 1.90463 1.56498 1.51236 1.51762 1.41948 1.55561 1.08097 1.15707 1.19674 1.39993 0.84642 1.01633 0.90399 1.26032 0.96334 1.03872 0.95194 1.69681 1.42972 1.34005 1.09551 0.84880 0.78293 0.77162 0.78047 1.19865 1.19748 1.19505 1.22225 1.02547 0.87081 0.95548 1.21797 0.93575 1.02628 0.96678 0.91042 0.93488 0.89367 0.90844 0.95095 0.87634 0.92000 0.90993 0.93169 0.91440 0.74506 0.91631 0.91248 0.93372 0.95848 0.92011 0.91953 0.86516 0.77041 0.91361 0.94330 0.88109 0.87866 0.89578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 10.28 71.98 0.74 -1.54 16 2 C 0.05 0.89 6.44 71.98 0.46 1.35 16 3 O -0.38 -7.92 9.17 -129.99 -1.19 -9.12 16 4 C 0.08 1.21 2.51 29.85 0.07 1.29 16 5 H 0.11 1.18 7.81 -2.39 -0.02 1.17 16 6 C -0.11 -1.20 5.61 30.59 0.17 -1.03 16 7 C -0.15 -1.21 9.76 71.98 0.70 -0.51 16 8 C 0.48 10.95 7.09 87.66 0.62 11.57 16 9 O -0.58 -19.32 16.17 15.95 0.26 -19.07 16 10 N -0.71 -12.33 4.98 -442.15 -2.20 -14.53 16 11 C 0.15 3.37 2.52 45.07 0.11 3.48 16 12 C -0.11 -3.20 5.67 30.65 0.17 -3.03 16 13 C 0.06 2.10 5.10 86.33 0.44 2.54 16 14 N -0.53 -16.83 4.40 -900.95 -3.96 -20.79 16 15 C 0.06 1.97 5.45 85.55 0.47 2.44 16 16 C 0.44 21.15 7.46 87.66 0.65 21.80 16 17 O -0.61 -34.04 13.90 -3.09 -0.04 -34.08 16 18 N -0.58 -29.81 5.29 -306.98 -1.62 -31.43 16 19 C -0.33 -18.91 9.68 84.04 0.81 -18.09 16 20 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 21 C -0.01 -0.80 5.50 84.92 0.47 -0.33 16 22 N -0.92 -50.08 13.05 21.66 0.28 -49.80 16 23 Si 0.99 43.44 29.55 68.60 2.03 45.46 16 24 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 25 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 26 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 27 C 0.05 1.16 5.46 86.32 0.47 1.64 16 28 C -0.11 -1.86 5.57 30.64 0.17 -1.69 16 29 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 31 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.07 0.91 8.11 -2.38 -0.02 0.89 16 33 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.11 0.60 7.76 -2.39 -0.02 0.58 16 35 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 37 H 0.05 0.57 7.97 -2.39 -0.02 0.55 16 38 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 39 H 0.42 4.13 8.31 -92.70 -0.77 3.36 16 40 H 0.07 1.76 7.58 -2.38 -0.02 1.74 16 41 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 42 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.06 2.70 5.78 -2.38 -0.01 2.68 16 45 H 0.06 2.00 8.12 -2.39 -0.02 1.98 16 46 H 0.12 3.42 7.99 -2.39 -0.02 3.40 16 47 H 0.40 19.45 7.90 -92.71 -0.73 18.72 16 48 H 0.28 14.06 8.31 -92.70 -0.77 13.29 16 49 H 0.04 0.81 8.14 -2.38 -0.02 0.80 16 50 H 0.10 1.81 8.01 -2.39 -0.02 1.79 16 51 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 52 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -77.89 418.60 -0.50 -78.39 By element: Atomic # 1 Polarization: 35.65 SS G_CDS: -0.59 Total: 35.06 kcal Atomic # 6 Polarization: 13.36 SS G_CDS: 6.54 Total: 19.90 kcal Atomic # 7 Polarization: -109.05 SS G_CDS: -7.50 Total: -116.56 kcal Atomic # 8 Polarization: -61.29 SS G_CDS: -0.98 Total: -62.26 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.46 kcal Total: -77.89 -0.50 -78.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226342643.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.897 kcal (2) G-P(sol) polarization free energy of solvation -77.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds