Wall clock time and date at job start Wed Apr 1 2020 00:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42895 * 109.47698 * 2 1 4 4 C 1.42895 * 114.00439 * 185.02571 * 3 2 1 5 5 H 1.09001 * 109.46732 * 16.62834 * 4 3 2 6 6 C 1.52996 * 109.47362 * 256.62257 * 4 3 2 7 7 C 1.53006 * 109.47084 * 65.69844 * 6 4 3 8 8 C 1.50706 * 109.46905 * 136.62299 * 4 3 2 9 9 O 1.21277 * 119.99950 * 15.92576 * 8 4 3 10 10 N 1.34774 * 119.99622 * 195.92430 * 8 4 3 11 11 C 1.46499 * 120.00320 * 5.46439 * 10 8 4 12 12 C 1.46502 * 120.00085 * 185.46420 * 10 8 4 13 13 C 1.52999 * 109.47014 * 270.00409 * 12 10 8 14 14 H 1.08994 * 112.74952 * 75.76622 * 13 12 10 15 15 C 1.53521 * 113.47232 * 206.61723 * 13 12 10 16 16 C 1.53517 * 83.57455 * 140.79009 * 15 13 12 17 17 N 1.47486 * 113.47477 * 304.99380 * 13 12 10 18 18 C 1.46893 * 110.99955 * 106.53187 * 17 13 12 19 19 C 1.50697 * 109.47157 * 190.00238 * 18 17 13 20 20 O 1.21295 * 119.99988 * 359.97438 * 19 18 17 21 21 N 1.34779 * 119.99859 * 180.02562 * 19 18 17 22 22 C 1.37105 * 119.99692 * 179.97438 * 21 19 18 23 23 H 1.08000 * 119.99927 * 359.97438 * 22 21 19 24 24 C 1.38945 * 119.99886 * 179.97438 * 22 21 19 25 25 N 1.31417 * 120.00050 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 120.00270 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47166 * 89.99796 * 26 24 22 28 28 H 1.48496 * 109.47475 * 210.00194 * 26 24 22 29 29 H 1.48497 * 109.47085 * 330.00507 * 26 24 22 30 30 H 1.08999 * 109.46952 * 60.00006 * 1 2 3 31 31 H 1.08995 * 109.47122 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46946 * 300.00002 * 1 2 3 33 33 H 1.09000 * 109.46946 * 239.99997 * 2 1 3 34 34 H 1.08997 * 109.47456 * 120.00568 * 2 1 3 35 35 H 1.08997 * 109.47047 * 185.69228 * 6 4 3 36 36 H 1.08999 * 109.47317 * 305.69697 * 6 4 3 37 37 H 1.08992 * 109.47199 * 176.43638 * 7 6 4 38 38 H 1.09000 * 109.47057 * 296.44019 * 7 6 4 39 39 H 1.08998 * 109.46816 * 56.43424 * 7 6 4 40 40 H 1.09002 * 109.47335 * 85.31999 * 11 10 8 41 41 H 1.09004 * 109.47279 * 325.31747 * 11 10 8 42 42 H 1.09004 * 109.47292 * 205.32384 * 11 10 8 43 43 H 1.09004 * 109.47057 * 29.99600 * 12 10 8 44 44 H 1.08992 * 109.47586 * 149.99822 * 12 10 8 45 45 H 1.09003 * 114.16700 * 254.42989 * 15 13 12 46 46 H 1.09001 * 114.17275 * 27.13997 * 15 13 12 47 47 H 1.09001 * 113.47552 * 219.21478 * 16 15 13 48 48 H 1.09001 * 113.53214 * 88.74768 * 16 15 13 49 49 H 1.09007 * 109.47206 * 310.00348 * 18 17 13 50 50 H 1.09007 * 109.47307 * 70.00023 * 18 17 13 51 51 H 0.96999 * 120.00097 * 359.97438 * 21 19 18 52 52 H 0.96996 * 120.00090 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0065 1.3472 0.0000 4 6 3.4262 1.4617 -0.1144 5 1 3.8391 0.5182 -0.4715 6 6 4.0230 1.7940 1.2546 7 6 3.8024 0.6167 2.2066 8 6 3.7647 2.5594 -1.0899 9 8 2.9187 3.3664 -1.4120 10 7 5.0076 2.6442 -1.6041 11 6 5.9948 1.6027 -1.3097 12 6 5.3714 3.7780 -2.4577 13 6 5.0671 3.4356 -3.9175 14 1 4.0030 3.4834 -4.1486 15 6 5.9469 4.1956 -4.9200 16 6 5.9483 2.8566 -5.6709 17 7 5.7125 2.1912 -4.3759 18 6 4.7300 1.1078 -4.5119 19 6 5.4491 -0.1968 -4.7401 20 8 6.6609 -0.2214 -4.7854 21 7 4.7456 -1.3359 -4.8947 22 6 5.3998 -2.5227 -5.1028 23 1 6.4789 -2.5446 -5.1432 24 6 4.6747 -3.6972 -5.2618 25 7 3.3617 -3.6704 -5.2131 26 14 5.5659 -5.3140 -5.5460 27 1 5.8500 -5.9591 -4.2389 28 1 4.7135 -6.2117 -6.3661 29 1 6.8430 -5.0566 -6.2588 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 5.0917 1.9808 1.1494 36 1 3.5367 2.6827 1.6570 37 1 4.2825 0.8273 3.1622 38 1 2.7335 0.4700 2.3615 39 1 4.2341 -0.2859 1.7742 40 1 5.8771 0.7804 -2.0156 41 1 5.8433 1.2348 -0.2949 42 1 6.9987 2.0178 -1.3995 43 1 4.7949 4.6547 -2.1624 44 1 6.4351 3.9888 -2.3480 45 1 5.4324 5.0008 -5.4445 46 1 6.9207 4.4881 -4.5272 47 1 6.9118 2.6098 -6.1167 48 1 5.1199 2.7496 -6.3712 49 1 4.1351 1.0403 -3.6010 50 1 4.0755 1.3149 -5.3587 51 1 3.7765 -1.3161 -4.8588 52 1 2.8554 -4.4904 -5.3237 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230958241.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:58:25 Heat of formation + Delta-G solvation = -76.100054 kcal Electronic energy + Delta-G solvation = -32215.844386 eV Core-core repulsion = 28024.156271 eV Total energy + Delta-G solvation = -4191.688116 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.64606 -39.67851 -37.90031 -37.62844 -35.37874 -33.91820 -33.69912 -31.37225 -31.05943 -30.72089 -29.22512 -27.19620 -26.07344 -25.78108 -23.71800 -23.39686 -22.73131 -21.91049 -19.80045 -19.28973 -19.15194 -17.90389 -17.36285 -16.86726 -16.17122 -16.03482 -15.88152 -15.63393 -15.41937 -14.69909 -14.50122 -14.28464 -14.06256 -13.98457 -13.76967 -13.69458 -13.34622 -12.82110 -12.61141 -12.51381 -12.44441 -12.40302 -12.37267 -12.27058 -11.91165 -11.62616 -11.53663 -11.50269 -11.36739 -11.26986 -11.22640 -11.06069 -10.88867 -10.82216 -10.48674 -10.41507 -10.22644 -9.95731 -9.51236 -9.25267 -8.90995 -8.42072 -8.17611 -7.97229 -6.42670 -3.83748 2.62704 2.81073 3.15497 3.24402 3.30079 3.74185 3.89742 4.03112 4.24923 4.41833 4.56015 4.69799 4.79259 4.88815 5.01763 5.05116 5.06479 5.14082 5.18761 5.20655 5.25195 5.34445 5.38277 5.40057 5.48148 5.51744 5.53402 5.61146 5.63222 5.69375 5.74746 5.75782 5.80927 5.84223 5.89030 5.89952 6.01108 6.04555 6.11347 6.14887 6.23286 6.29547 6.50298 6.62443 7.05724 7.24729 7.44620 7.53479 8.04863 8.23732 8.60992 9.17214 9.53700 10.06077 10.75088 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.007767 B = 0.004356 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3604.071715 B = 6426.603740 C = 8776.729973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.049 3.951 3 O -0.357 6.357 4 C 0.074 3.926 5 H 0.087 0.913 6 C -0.135 4.135 7 C -0.154 4.154 8 C 0.509 3.491 9 O -0.526 6.526 10 N -0.604 5.604 11 C 0.077 3.923 12 C 0.139 3.861 13 C 0.004 3.996 14 H 0.079 0.921 15 C -0.137 4.137 16 C 0.004 3.996 17 N -0.428 5.428 18 C 0.012 3.988 19 C 0.448 3.552 20 O -0.574 6.574 21 N -0.568 5.568 22 C -0.297 4.297 23 H 0.102 0.898 24 C 0.022 3.978 25 N -0.902 5.902 26 Si 0.928 3.072 27 H -0.278 1.278 28 H -0.284 1.284 29 H -0.270 1.270 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.057 0.943 40 H 0.071 0.929 41 H 0.063 0.937 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.083 0.917 45 H 0.074 0.926 46 H 0.093 0.907 47 H 0.087 0.913 48 H 0.064 0.936 49 H 0.079 0.921 50 H 0.055 0.945 51 H 0.390 0.610 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.577 11.888 10.839 16.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.028 4.028 3 O -0.275 6.275 4 C 0.012 3.988 5 H 0.105 0.895 6 C -0.173 4.173 7 C -0.211 4.211 8 C 0.296 3.704 9 O -0.401 6.401 10 N -0.338 5.338 11 C -0.065 4.065 12 C 0.016 3.984 13 C -0.107 4.107 14 H 0.097 0.903 15 C -0.175 4.175 16 C -0.125 4.125 17 N -0.151 5.151 18 C -0.120 4.120 19 C 0.233 3.767 20 O -0.457 6.457 21 N -0.205 5.205 22 C -0.427 4.427 23 H 0.120 0.880 24 C -0.179 4.179 25 N -0.544 5.544 26 Si 0.755 3.245 27 H -0.204 1.204 28 H -0.210 1.210 29 H -0.194 1.194 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.089 0.911 41 H 0.082 0.918 42 H 0.096 0.904 43 H 0.100 0.900 44 H 0.101 0.899 45 H 0.092 0.908 46 H 0.112 0.888 47 H 0.106 0.894 48 H 0.083 0.917 49 H 0.098 0.902 50 H 0.073 0.927 51 H 0.223 0.777 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.061 11.946 11.018 16.251 hybrid contribution -0.869 -1.087 -0.731 1.572 sum -0.808 10.859 10.286 14.979 Atomic orbital electron populations 1.21714 0.93525 1.02290 1.03069 1.22751 0.95924 0.83413 1.00680 1.87998 1.18784 1.26576 1.94129 1.22003 0.83939 0.98028 0.94812 0.89490 1.21928 1.01120 1.00326 0.93882 1.21830 1.02400 0.97726 0.99132 1.20629 0.81913 0.86390 0.81448 1.90678 1.46827 1.42182 1.60411 1.47693 1.11834 1.25011 1.49230 1.21985 0.92345 0.91539 1.00662 1.21450 1.00775 0.88412 0.87728 1.23892 0.98394 0.92681 0.95750 0.90346 1.23171 1.00413 0.96557 0.97346 1.23740 1.02755 0.93065 0.92974 1.68749 1.31126 1.01053 1.14137 1.22468 0.94496 0.93734 1.01320 1.19667 0.88209 0.84453 0.84382 1.90518 1.13561 1.86230 1.55383 1.41901 1.09074 1.06159 1.63387 1.19673 0.93559 0.83575 1.45884 0.87992 1.25242 0.95494 0.99674 0.97518 1.69616 1.05143 1.29238 1.50381 0.85885 0.79105 0.81092 0.78375 1.20434 1.20954 1.19448 0.91696 0.90949 0.92056 0.92722 0.92912 0.90242 0.90510 0.92133 0.91991 0.92389 0.91058 0.91817 0.90423 0.89957 0.89854 0.90781 0.88835 0.89416 0.91747 0.90242 0.92698 0.77673 0.91917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 10.28 37.16 0.38 -1.25 16 2 C 0.05 0.60 6.12 37.16 0.23 0.83 16 3 O -0.36 -5.22 9.32 -54.62 -0.51 -5.73 16 4 C 0.07 0.97 1.83 -27.88 -0.05 0.92 16 5 H 0.09 1.12 6.75 -51.93 -0.35 0.76 16 6 C -0.13 -1.40 5.28 -26.73 -0.14 -1.54 16 7 C -0.15 -1.37 9.04 37.16 0.34 -1.03 16 8 C 0.51 7.70 6.95 -10.98 -0.08 7.62 16 9 O -0.53 -9.72 16.21 -13.83 -0.22 -9.94 16 10 N -0.60 -8.00 2.59 -181.57 -0.47 -8.47 16 11 C 0.08 0.96 9.36 59.85 0.56 1.52 16 12 C 0.14 1.71 5.56 -4.04 -0.02 1.69 16 13 C 0.00 0.05 3.35 -71.42 -0.24 -0.19 16 14 H 0.08 1.15 7.91 -51.93 -0.41 0.74 16 15 C -0.14 -1.52 8.00 -26.19 -0.21 -1.73 16 16 C 0.00 0.05 7.71 -7.53 -0.06 0.00 16 17 N -0.43 -6.95 5.01 -237.90 -1.19 -8.14 16 18 C 0.01 0.22 4.72 -4.98 -0.02 0.20 16 19 C 0.45 10.50 7.85 -10.99 -0.09 10.41 16 20 O -0.57 -15.26 16.01 5.54 0.09 -15.17 16 21 N -0.57 -14.32 5.29 -10.96 -0.06 -14.38 16 22 C -0.30 -8.18 9.68 -14.93 -0.14 -8.32 16 23 H 0.10 2.94 7.16 -52.49 -0.38 2.57 16 24 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 25 N -0.90 -24.35 13.05 55.50 0.72 -23.63 16 26 Si 0.93 20.82 29.55 -169.99 -5.02 15.79 16 27 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 28 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 29 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.05 0.73 8.02 -51.93 -0.42 0.31 16 34 H 0.05 0.56 6.23 -51.93 -0.32 0.23 16 35 H 0.08 0.72 6.32 -51.93 -0.33 0.39 16 36 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.58 6.58 -51.93 -0.34 0.23 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 1.13 7.47 -51.93 -0.39 0.74 16 41 H 0.06 0.65 4.90 -51.93 -0.25 0.39 16 42 H 0.08 0.88 7.84 -51.93 -0.41 0.48 16 43 H 0.08 1.01 7.50 -51.93 -0.39 0.62 16 44 H 0.08 0.88 7.59 -51.93 -0.39 0.49 16 45 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.09 0.95 7.94 -51.93 -0.41 0.53 16 47 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 48 H 0.06 0.90 7.42 -51.93 -0.39 0.52 16 49 H 0.08 1.46 7.81 -51.93 -0.41 1.05 16 50 H 0.05 0.97 7.30 -51.92 -0.38 0.59 16 51 H 0.39 9.60 7.90 -40.82 -0.32 9.28 16 52 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 415.65 15.07 6.26 6.26 Total: -1.00 -33.14 415.65 -8.84 -41.98 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: -8.80 Total: 11.81 kcal Atomic # 6 Polarization: 9.26 SS G_CDS: 0.36 Total: 9.62 kcal Atomic # 7 Polarization: -53.62 SS G_CDS: -1.00 Total: -54.62 kcal Atomic # 8 Polarization: -30.20 SS G_CDS: -0.64 Total: -30.85 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -33.14 -8.84 -41.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230958241.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.116 kcal (2) G-P(sol) polarization free energy of solvation -33.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds