Wall clock time and date at job start Wed Apr 1 2020 00:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42895 * 109.47698 * 2 1 4 4 C 1.42895 * 114.00439 * 185.02571 * 3 2 1 5 5 H 1.09001 * 109.46732 * 16.62834 * 4 3 2 6 6 C 1.52996 * 109.47362 * 256.62257 * 4 3 2 7 7 C 1.53006 * 109.47084 * 65.69844 * 6 4 3 8 8 C 1.50706 * 109.46905 * 136.62299 * 4 3 2 9 9 O 1.21277 * 119.99950 * 15.92576 * 8 4 3 10 10 N 1.34774 * 119.99622 * 195.92430 * 8 4 3 11 11 C 1.46499 * 120.00320 * 5.46439 * 10 8 4 12 12 C 1.46502 * 120.00085 * 185.46420 * 10 8 4 13 13 C 1.52999 * 109.47014 * 270.00409 * 12 10 8 14 14 H 1.08994 * 112.74952 * 75.76622 * 13 12 10 15 15 C 1.53521 * 113.47232 * 206.61723 * 13 12 10 16 16 C 1.53517 * 83.57455 * 140.79009 * 15 13 12 17 17 N 1.47486 * 113.47477 * 304.99380 * 13 12 10 18 18 C 1.46893 * 110.99955 * 106.53187 * 17 13 12 19 19 C 1.50697 * 109.47157 * 190.00238 * 18 17 13 20 20 O 1.21295 * 119.99988 * 359.97438 * 19 18 17 21 21 N 1.34779 * 119.99859 * 180.02562 * 19 18 17 22 22 C 1.37105 * 119.99692 * 179.97438 * 21 19 18 23 23 H 1.08000 * 119.99927 * 359.97438 * 22 21 19 24 24 C 1.38945 * 119.99886 * 179.97438 * 22 21 19 25 25 N 1.31417 * 120.00050 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 120.00270 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47166 * 89.99796 * 26 24 22 28 28 H 1.48496 * 109.47475 * 210.00194 * 26 24 22 29 29 H 1.48497 * 109.47085 * 330.00507 * 26 24 22 30 30 H 1.08999 * 109.46952 * 60.00006 * 1 2 3 31 31 H 1.08995 * 109.47122 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46946 * 300.00002 * 1 2 3 33 33 H 1.09000 * 109.46946 * 239.99997 * 2 1 3 34 34 H 1.08997 * 109.47456 * 120.00568 * 2 1 3 35 35 H 1.08997 * 109.47047 * 185.69228 * 6 4 3 36 36 H 1.08999 * 109.47317 * 305.69697 * 6 4 3 37 37 H 1.08992 * 109.47199 * 176.43638 * 7 6 4 38 38 H 1.09000 * 109.47057 * 296.44019 * 7 6 4 39 39 H 1.08998 * 109.46816 * 56.43424 * 7 6 4 40 40 H 1.09002 * 109.47335 * 85.31999 * 11 10 8 41 41 H 1.09004 * 109.47279 * 325.31747 * 11 10 8 42 42 H 1.09004 * 109.47292 * 205.32384 * 11 10 8 43 43 H 1.09004 * 109.47057 * 29.99600 * 12 10 8 44 44 H 1.08992 * 109.47586 * 149.99822 * 12 10 8 45 45 H 1.09003 * 114.16700 * 254.42989 * 15 13 12 46 46 H 1.09001 * 114.17275 * 27.13997 * 15 13 12 47 47 H 1.09001 * 113.47552 * 219.21478 * 16 15 13 48 48 H 1.09001 * 113.53214 * 88.74768 * 16 15 13 49 49 H 1.09007 * 109.47206 * 310.00348 * 18 17 13 50 50 H 1.09007 * 109.47307 * 70.00023 * 18 17 13 51 51 H 0.96999 * 120.00097 * 359.97438 * 21 19 18 52 52 H 0.96996 * 120.00090 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0065 1.3472 0.0000 4 6 3.4262 1.4617 -0.1144 5 1 3.8391 0.5182 -0.4715 6 6 4.0230 1.7940 1.2546 7 6 3.8024 0.6167 2.2066 8 6 3.7647 2.5594 -1.0899 9 8 2.9187 3.3664 -1.4120 10 7 5.0076 2.6442 -1.6041 11 6 5.9948 1.6027 -1.3097 12 6 5.3714 3.7780 -2.4577 13 6 5.0671 3.4356 -3.9175 14 1 4.0030 3.4834 -4.1486 15 6 5.9469 4.1956 -4.9200 16 6 5.9483 2.8566 -5.6709 17 7 5.7125 2.1912 -4.3759 18 6 4.7300 1.1078 -4.5119 19 6 5.4491 -0.1968 -4.7401 20 8 6.6609 -0.2214 -4.7854 21 7 4.7456 -1.3359 -4.8947 22 6 5.3998 -2.5227 -5.1028 23 1 6.4789 -2.5446 -5.1432 24 6 4.6747 -3.6972 -5.2618 25 7 3.3617 -3.6704 -5.2131 26 14 5.5659 -5.3140 -5.5460 27 1 5.8500 -5.9591 -4.2389 28 1 4.7135 -6.2117 -6.3661 29 1 6.8430 -5.0566 -6.2588 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 5.0917 1.9808 1.1494 36 1 3.5367 2.6827 1.6570 37 1 4.2825 0.8273 3.1622 38 1 2.7335 0.4700 2.3615 39 1 4.2341 -0.2859 1.7742 40 1 5.8771 0.7804 -2.0156 41 1 5.8433 1.2348 -0.2949 42 1 6.9987 2.0178 -1.3995 43 1 4.7949 4.6547 -2.1624 44 1 6.4351 3.9888 -2.3480 45 1 5.4324 5.0008 -5.4445 46 1 6.9207 4.4881 -4.5272 47 1 6.9118 2.6098 -6.1167 48 1 5.1199 2.7496 -6.3712 49 1 4.1351 1.0403 -3.6010 50 1 4.0755 1.3149 -5.3587 51 1 3.7765 -1.3161 -4.8588 52 1 2.8554 -4.4904 -5.3237 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230958241.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:58:24 Heat of formation + Delta-G solvation = -98.874191 kcal Electronic energy + Delta-G solvation = -32216.831947 eV Core-core repulsion = 28024.156271 eV Total energy + Delta-G solvation = -4192.675676 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.82241 -40.88435 -39.62587 -38.84354 -36.54411 -35.94088 -34.60158 -33.33102 -32.17281 -31.97726 -30.30883 -28.22098 -27.54414 -27.09959 -25.38164 -24.43219 -23.69625 -22.80585 -21.12877 -20.88272 -20.28530 -19.92375 -18.44309 -17.95210 -17.70185 -17.30701 -17.10846 -16.80276 -16.71275 -16.42291 -16.02423 -15.60793 -15.32050 -15.17956 -15.02226 -14.81949 -14.66716 -14.17435 -13.90520 -13.85387 -13.54546 -13.44095 -13.36566 -13.30506 -13.17030 -12.95588 -12.84029 -12.68531 -12.54945 -12.44126 -12.37401 -12.30337 -12.15648 -12.14402 -11.98904 -11.76150 -11.65776 -11.49832 -11.03851 -10.44198 -10.34001 -10.02500 -9.89639 -9.52094 -8.46797 -5.96110 1.36911 1.41002 1.46023 1.53656 1.76745 2.01922 2.27247 2.71333 2.83225 3.17942 3.36671 3.41058 3.55351 3.78047 3.79875 3.85318 4.06448 4.11421 4.16122 4.19223 4.22180 4.25974 4.28717 4.33440 4.41846 4.42904 4.43173 4.48139 4.59219 4.63328 4.74818 4.79040 4.79449 4.82246 4.96415 4.97764 4.98658 5.07033 5.10472 5.22279 5.23441 5.33075 5.34652 5.40213 5.49577 5.89552 6.03637 6.07656 6.34558 6.58128 7.08796 7.11633 7.53381 8.08933 8.70707 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.007767 B = 0.004356 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3604.071715 B = 6426.603740 C = 8776.729973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.045 3.955 3 O -0.378 6.378 4 C 0.071 3.929 5 H 0.087 0.913 6 C -0.128 4.128 7 C -0.151 4.151 8 C 0.504 3.496 9 O -0.566 6.566 10 N -0.598 5.598 11 C 0.082 3.918 12 C 0.136 3.864 13 C 0.005 3.995 14 H 0.064 0.936 15 C -0.108 4.108 16 C -0.007 4.007 17 N -0.444 5.444 18 C 0.031 3.969 19 C 0.450 3.550 20 O -0.606 6.606 21 N -0.577 5.577 22 C -0.329 4.329 23 H 0.081 0.919 24 C -0.013 4.013 25 N -0.922 5.922 26 Si 0.992 3.008 27 H -0.269 1.269 28 H -0.273 1.273 29 H -0.272 1.272 30 H 0.049 0.951 31 H 0.089 0.911 32 H 0.069 0.931 33 H 0.038 0.962 34 H 0.073 0.927 35 H 0.095 0.905 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.056 0.944 39 H 0.059 0.941 40 H 0.035 0.965 41 H 0.087 0.913 42 H 0.092 0.908 43 H 0.085 0.915 44 H 0.107 0.893 45 H 0.099 0.901 46 H 0.111 0.889 47 H 0.075 0.925 48 H 0.065 0.935 49 H 0.078 0.922 50 H 0.062 0.938 51 H 0.391 0.609 52 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.129 12.238 11.826 17.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.031 4.031 3 O -0.297 6.297 4 C 0.010 3.990 5 H 0.104 0.896 6 C -0.165 4.165 7 C -0.208 4.208 8 C 0.292 3.708 9 O -0.444 6.444 10 N -0.331 5.331 11 C -0.060 4.060 12 C 0.014 3.986 13 C -0.106 4.106 14 H 0.082 0.918 15 C -0.146 4.146 16 C -0.136 4.136 17 N -0.167 5.167 18 C -0.102 4.102 19 C 0.237 3.763 20 O -0.491 6.491 21 N -0.214 5.214 22 C -0.458 4.458 23 H 0.099 0.901 24 C -0.212 4.212 25 N -0.563 5.563 26 Si 0.816 3.184 27 H -0.194 1.194 28 H -0.198 1.198 29 H -0.197 1.197 30 H 0.068 0.932 31 H 0.108 0.892 32 H 0.088 0.912 33 H 0.056 0.944 34 H 0.091 0.909 35 H 0.113 0.887 36 H 0.088 0.912 37 H 0.097 0.903 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.054 0.946 41 H 0.105 0.895 42 H 0.111 0.889 43 H 0.103 0.897 44 H 0.125 0.875 45 H 0.118 0.882 46 H 0.129 0.871 47 H 0.093 0.907 48 H 0.084 0.916 49 H 0.097 0.903 50 H 0.080 0.920 51 H 0.224 0.776 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.771 12.304 12.008 17.210 hybrid contribution -1.076 -1.166 -1.063 1.909 sum -0.304 11.139 10.945 15.619 Atomic orbital electron populations 1.21736 0.92575 1.03345 1.02734 1.22886 0.96797 0.82638 1.00807 1.87972 1.19673 1.27823 1.94252 1.22148 0.83626 0.97236 0.95970 0.89563 1.21911 1.01620 1.00683 0.92335 1.21818 1.02331 0.97087 0.99558 1.21050 0.81950 0.86317 0.81444 1.90650 1.48009 1.43844 1.61939 1.47761 1.11459 1.25195 1.48643 1.21969 0.92775 0.90313 1.00945 1.21612 1.02228 0.88077 0.86726 1.23909 0.97946 0.91571 0.97135 0.91790 1.23122 1.00882 0.95364 0.95264 1.23850 1.02128 0.95097 0.92548 1.68757 1.30822 1.01447 1.15681 1.22229 0.94440 0.92087 1.01407 1.20452 0.87965 0.85465 0.82430 1.90482 1.15185 1.86987 1.56450 1.41978 1.09070 1.06388 1.64004 1.19644 0.92919 0.85146 1.48105 0.90112 1.26033 0.96238 1.02429 0.96513 1.69689 1.06124 1.30375 1.50161 0.84938 0.77862 0.76995 0.78628 1.19393 1.19799 1.19717 0.93199 0.89198 0.91176 0.94393 0.90888 0.88704 0.91172 0.90315 0.92502 0.92157 0.94640 0.89500 0.88946 0.89685 0.87472 0.88242 0.87071 0.90657 0.91642 0.90342 0.91955 0.77584 0.91376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.18 10.28 71.98 0.74 -2.44 16 2 C 0.04 1.11 6.12 71.98 0.44 1.55 16 3 O -0.38 -11.18 9.32 -130.44 -1.22 -12.40 16 4 C 0.07 1.87 1.83 29.85 0.05 1.92 16 5 H 0.09 2.23 6.75 -2.39 -0.02 2.21 16 6 C -0.13 -2.48 5.28 30.60 0.16 -2.32 16 7 C -0.15 -2.41 9.04 71.98 0.65 -1.76 16 8 C 0.50 15.22 6.95 87.66 0.61 15.83 16 9 O -0.57 -21.20 16.21 15.52 0.25 -20.95 16 10 N -0.60 -15.37 2.59 -846.75 -2.20 -17.56 16 11 C 0.08 1.97 9.36 127.77 1.20 3.16 16 12 C 0.14 3.11 5.56 86.38 0.48 3.59 16 13 C 0.00 0.13 3.35 42.20 0.14 0.27 16 14 H 0.06 1.84 7.91 -2.39 -0.02 1.82 16 15 C -0.11 -2.13 8.00 30.94 0.25 -1.88 16 16 C -0.01 -0.20 7.71 83.58 0.64 0.44 16 17 N -0.44 -14.24 5.01 -906.57 -4.54 -18.78 16 18 C 0.03 1.15 4.72 85.56 0.40 1.55 16 19 C 0.45 21.70 7.85 87.66 0.69 22.39 16 20 O -0.61 -33.10 16.01 -3.08 -0.05 -33.15 16 21 N -0.58 -30.03 5.29 -306.98 -1.62 -31.65 16 22 C -0.33 -18.54 9.68 84.04 0.81 -17.73 16 23 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 24 C -0.01 -0.67 5.50 84.92 0.47 -0.20 16 25 N -0.92 -49.89 13.05 21.66 0.28 -49.60 16 26 Si 0.99 42.51 29.55 68.60 2.03 44.54 16 27 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 28 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 29 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 30 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.04 1.04 8.02 -2.39 -0.02 1.02 16 34 H 0.07 1.48 6.23 -2.39 -0.01 1.47 16 35 H 0.09 1.52 6.32 -2.39 -0.02 1.50 16 36 H 0.07 1.47 8.14 -2.39 -0.02 1.46 16 37 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.06 0.97 6.58 -2.39 -0.02 0.95 16 39 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.03 1.13 7.47 -2.39 -0.02 1.11 16 41 H 0.09 1.64 4.90 -2.39 -0.01 1.63 16 42 H 0.09 1.94 7.84 -2.39 -0.02 1.92 16 43 H 0.08 1.95 7.50 -2.39 -0.02 1.93 16 44 H 0.11 1.95 7.59 -2.39 -0.02 1.93 16 45 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 46 H 0.11 1.85 7.94 -2.39 -0.02 1.83 16 47 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 48 H 0.07 1.80 7.42 -2.39 -0.02 1.78 16 49 H 0.08 2.96 7.81 -2.38 -0.02 2.94 16 50 H 0.06 2.24 7.30 -2.38 -0.02 2.22 16 51 H 0.39 19.89 7.90 -92.71 -0.73 19.15 16 52 H 0.28 14.03 8.31 -92.71 -0.77 13.26 16 Total: -1.00 -73.14 415.65 0.86 -72.27 By element: Atomic # 1 Polarization: 42.71 SS G_CDS: 0.19 Total: 42.89 kcal Atomic # 6 Polarization: 16.65 SS G_CDS: 7.74 Total: 24.39 kcal Atomic # 7 Polarization: -109.52 SS G_CDS: -8.07 Total: -117.59 kcal Atomic # 8 Polarization: -65.49 SS G_CDS: -1.01 Total: -66.50 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Total: -73.14 0.86 -72.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230958241.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.602 kcal (2) G-P(sol) polarization free energy of solvation -73.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds