Wall clock time and date at job start Wed Apr 1 2020 00:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46753 * 2 1 4 4 H 1.09002 * 109.47183 * 305.52714 * 3 2 1 5 5 C 1.50698 * 109.47044 * 185.52301 * 3 2 1 6 6 H 1.08002 * 120.00432 * 240.00269 * 5 3 2 7 7 C 1.37879 * 119.99919 * 60.00321 * 5 3 2 8 8 N 1.31513 * 119.99873 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00009 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47113 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47010 * 120.00046 * 9 7 5 12 12 H 1.48495 * 109.47195 * 240.00014 * 9 7 5 13 13 N 1.46901 * 109.46962 * 65.52698 * 3 2 1 14 14 C 1.46896 * 111.00336 * 60.46056 * 13 3 2 15 15 C 1.53235 * 109.34171 * 187.25299 * 14 13 3 16 16 N 1.47079 * 108.52381 * 306.17008 * 15 14 13 17 17 C 1.34768 * 120.88288 * 231.20479 * 16 15 14 18 18 O 1.21513 * 120.00036 * 174.15293 * 17 16 15 19 19 O 1.34638 * 120.00193 * 354.16123 * 17 16 15 20 20 C 1.45199 * 117.00012 * 179.97438 * 19 17 16 21 21 C 1.52999 * 109.47448 * 59.99860 * 20 19 17 22 22 C 1.53009 * 109.46867 * 179.97438 * 20 19 17 23 23 C 1.53001 * 109.47031 * 299.99331 * 20 19 17 24 24 C 1.47080 * 118.23444 * 51.18713 * 16 15 14 25 25 H 1.08994 * 109.63195 * 68.52120 * 24 16 15 26 26 C 1.50702 * 109.78741 * 189.01553 * 24 16 15 27 27 N 1.34779 * 119.99470 * 238.30500 * 26 24 16 28 28 O 1.21277 * 120.00339 * 58.30436 * 26 24 16 29 29 C 1.46904 * 110.99819 * 184.76586 * 13 3 2 30 30 H 1.08997 * 109.47078 * 299.99337 * 1 2 3 31 31 H 1.08998 * 109.47240 * 59.99732 * 1 2 3 32 32 H 1.09004 * 109.46738 * 179.97438 * 1 2 3 33 33 H 1.09007 * 109.46859 * 240.00677 * 2 1 3 34 34 H 1.08993 * 109.47639 * 120.00046 * 2 1 3 35 35 H 0.97002 * 119.99413 * 180.02562 * 8 7 5 36 36 H 1.09000 * 109.49193 * 307.21420 * 14 13 3 37 37 H 1.09002 * 109.49253 * 67.28980 * 14 13 3 38 38 H 1.09000 * 109.62893 * 186.46016 * 15 14 13 39 39 H 1.09003 * 109.78629 * 65.97594 * 15 14 13 40 40 H 1.08994 * 109.47062 * 59.99793 * 21 20 19 41 41 H 1.09001 * 109.47285 * 180.02562 * 21 20 19 42 42 H 1.09003 * 109.46654 * 299.99758 * 21 20 19 43 43 H 1.08997 * 109.47126 * 59.99411 * 22 20 19 44 44 H 1.09001 * 109.46831 * 179.97438 * 22 20 19 45 45 H 1.08999 * 109.46690 * 299.99682 * 22 20 19 46 46 H 1.08996 * 109.46805 * 60.00062 * 23 20 19 47 47 H 1.08998 * 109.46790 * 180.02562 * 23 20 19 48 48 H 1.09005 * 109.47226 * 300.00394 * 23 20 19 49 49 H 0.96998 * 119.99955 * 359.97438 * 27 26 24 50 50 H 0.97001 * 119.99502 * 179.97438 * 27 26 24 51 51 H 1.09005 * 109.48963 * 292.70165 * 29 13 3 52 52 H 1.08992 * 109.49281 * 52.78597 * 29 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5980 1.9842 -0.8364 5 6 3.5407 1.4448 -0.1367 6 1 4.1527 1.8870 0.6355 7 6 4.1326 0.8824 -1.2478 8 7 3.3873 0.3444 -2.1884 9 14 5.9928 0.8858 -1.4177 10 1 6.5969 1.5472 -0.2331 11 1 6.4843 -0.5126 -1.5074 12 1 6.3763 1.6251 -2.6471 13 7 1.6622 2.0954 1.2606 14 6 2.2501 1.3976 2.4118 15 6 1.6900 1.9943 3.7072 16 7 1.9077 3.4487 3.6841 17 6 2.4953 4.0768 4.7217 18 8 2.7638 5.2593 4.6430 19 8 2.7851 3.3940 5.8453 20 6 3.4181 4.1346 6.9219 21 6 2.5026 5.2791 7.3609 22 6 3.6679 3.1989 8.1065 23 6 4.7506 4.7061 6.4331 24 6 1.4674 4.1995 2.4985 25 1 0.3785 4.2020 2.4502 26 6 1.9741 5.6167 2.5748 27 7 1.1039 6.6456 2.5506 28 8 3.1648 5.8313 2.6579 29 6 2.0364 3.5160 1.2505 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 3.8038 -0.0517 -2.9699 36 1 1.9998 0.3379 2.3614 37 1 3.3335 1.5170 2.3949 38 1 2.2063 1.5604 4.5635 39 1 0.6226 1.7849 3.7786 40 1 1.5534 4.8719 7.7091 41 1 2.9780 5.8353 8.1688 42 1 2.3243 5.9458 6.5171 43 1 4.3199 2.3832 7.7940 44 1 4.1435 3.7547 8.9145 45 1 2.7184 2.7921 8.4546 46 1 4.5723 5.3727 5.5894 47 1 5.2259 5.2617 7.2415 48 1 5.4028 3.8907 6.1204 49 1 0.1516 6.4739 2.4837 50 1 1.4300 7.5578 2.6001 51 1 3.1227 3.6059 1.2499 52 1 1.6310 3.9925 0.3580 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255174237.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:38:44 Heat of formation + Delta-G solvation = -94.810963 kcal Electronic energy + Delta-G solvation = -33234.853182 eV Core-core repulsion = 29042.353701 eV Total energy + Delta-G solvation = -4192.499482 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.98065 -39.39433 -37.90313 -36.65416 -35.15566 -33.89312 -33.26071 -32.41154 -31.35597 -30.67263 -27.73014 -27.46418 -27.35955 -25.70334 -24.04636 -22.94064 -22.48160 -21.16433 -20.20345 -19.24267 -18.87309 -17.83158 -16.90504 -16.47520 -16.36554 -16.20426 -15.73922 -15.36578 -14.93258 -14.60684 -14.46867 -14.20868 -13.85607 -13.78149 -13.64734 -13.30365 -13.12468 -12.89529 -12.64850 -12.49533 -12.19948 -11.97456 -11.90541 -11.79961 -11.72538 -11.39288 -11.33571 -11.23190 -11.18360 -10.93844 -10.90001 -10.67992 -10.52290 -10.28020 -9.97116 -9.79651 -9.70473 -9.66161 -9.29002 -9.17598 -9.03031 -8.49279 -8.39499 -7.28239 -6.03061 -4.15838 2.14846 3.00440 3.25816 3.27094 3.34965 3.40901 3.65840 4.10434 4.39296 4.70058 4.73648 4.87893 4.89303 5.09887 5.21628 5.25375 5.33179 5.38705 5.46608 5.48641 5.56903 5.61504 5.72530 5.75430 5.80666 5.85805 5.91567 6.01647 6.23292 6.27105 6.34201 6.41308 6.41725 6.55796 6.60210 6.62663 6.63040 6.70622 7.02384 7.10326 7.11420 7.22194 7.52422 7.55180 7.61165 7.71011 7.85905 8.06643 8.17326 8.37254 8.52214 8.76788 8.92876 9.52680 10.96499 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.012216 B = 0.003792 C = 0.003682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2291.596269 B = 7382.048338 C = 7603.240751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.113 4.113 3 C 0.216 3.784 4 H 0.042 0.958 5 C -0.544 4.544 6 H 0.057 0.943 7 C 0.071 3.929 8 N -0.884 5.884 9 Si 0.885 3.115 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.530 5.530 14 C 0.042 3.958 15 C 0.119 3.881 16 N -0.582 5.582 17 C 0.645 3.355 18 O -0.542 6.542 19 O -0.363 6.363 20 C 0.137 3.863 21 C -0.180 4.180 22 C -0.139 4.139 23 C -0.184 4.184 24 C 0.149 3.851 25 H 0.091 0.909 26 C 0.533 3.467 27 N -0.858 5.858 28 O -0.507 6.507 29 C 0.063 3.937 30 H 0.047 0.953 31 H 0.039 0.961 32 H 0.026 0.974 33 H 0.094 0.906 34 H 0.034 0.966 35 H 0.261 0.739 36 H 0.089 0.911 37 H 0.045 0.955 38 H 0.087 0.913 39 H 0.072 0.928 40 H 0.056 0.944 41 H 0.066 0.934 42 H 0.087 0.913 43 H 0.066 0.934 44 H 0.077 0.923 45 H 0.065 0.935 46 H 0.092 0.908 47 H 0.065 0.935 48 H 0.058 0.942 49 H 0.394 0.606 50 H 0.398 0.602 51 H 0.057 0.943 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.050 6.425 15.867 18.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.151 4.151 3 C 0.110 3.890 4 H 0.060 0.940 5 C -0.583 4.583 6 H 0.075 0.925 7 C -0.132 4.132 8 N -0.523 5.523 9 Si 0.713 3.287 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.210 1.210 13 N -0.254 5.254 14 C -0.087 4.087 15 C -0.003 4.003 16 N -0.325 5.325 17 C 0.400 3.600 18 O -0.430 6.430 19 O -0.278 6.278 20 C 0.100 3.900 21 C -0.237 4.237 22 C -0.197 4.197 23 C -0.241 4.241 24 C 0.043 3.957 25 H 0.109 0.891 26 C 0.317 3.683 27 N -0.424 5.424 28 O -0.380 6.380 29 C -0.067 4.067 30 H 0.066 0.934 31 H 0.059 0.941 32 H 0.045 0.955 33 H 0.112 0.888 34 H 0.053 0.947 35 H 0.071 0.929 36 H 0.107 0.893 37 H 0.063 0.937 38 H 0.105 0.895 39 H 0.090 0.910 40 H 0.075 0.925 41 H 0.085 0.915 42 H 0.106 0.894 43 H 0.085 0.915 44 H 0.096 0.904 45 H 0.084 0.916 46 H 0.111 0.889 47 H 0.083 0.917 48 H 0.077 0.923 49 H 0.222 0.778 50 H 0.229 0.771 51 H 0.075 0.925 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.586 6.606 15.840 18.382 hybrid contribution 1.619 0.261 -0.260 1.660 sum -4.968 6.866 15.580 17.736 Atomic orbital electron populations 1.21714 0.98715 0.98536 1.00591 1.21651 0.92336 0.98962 1.02177 1.19310 0.93383 0.91249 0.85079 0.94044 1.21757 0.92750 1.38345 1.05489 0.92532 1.24866 0.97787 0.94879 0.95630 1.69873 1.34668 1.38417 1.09317 0.86645 0.86233 0.77682 0.78151 1.19889 1.20976 1.20963 1.62462 1.57821 1.00309 1.04841 1.22376 0.98080 0.99037 0.89225 1.21995 1.01393 0.77477 0.99483 1.46770 1.62191 1.09021 1.14471 1.18095 0.77560 0.83837 0.80474 1.91015 1.56383 1.14520 1.81114 1.86279 1.74609 1.43430 1.23501 1.21985 0.92390 0.91438 0.84164 1.22485 0.99198 0.98836 1.03207 1.21844 1.02707 0.99584 0.95524 1.22511 0.95511 1.02448 1.03603 1.21324 0.99279 0.89237 0.85860 0.89137 1.19835 0.86734 0.86535 0.75242 1.43700 1.09940 1.09111 1.79608 1.90729 1.16146 1.84969 1.46136 1.22096 1.00108 0.90883 0.93586 0.93405 0.94142 0.95529 0.88761 0.94688 0.92914 0.89265 0.93664 0.89480 0.90985 0.92459 0.91530 0.89411 0.91475 0.90435 0.91623 0.88886 0.91653 0.92277 0.77813 0.77135 0.92464 0.90011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 9.80 37.16 0.36 -2.19 16 2 C -0.11 -2.47 5.07 -26.73 -0.14 -2.61 16 3 C 0.22 4.95 1.74 -68.86 -0.12 4.83 16 4 H 0.04 1.06 8.07 -51.93 -0.42 0.64 16 5 C -0.54 -14.15 7.22 -34.44 -0.25 -14.39 16 6 H 0.06 1.54 5.86 -52.49 -0.31 1.23 16 7 C 0.07 1.90 5.29 -17.82 -0.09 1.80 16 8 N -0.88 -24.13 11.29 55.43 0.63 -23.51 16 9 Si 0.88 21.26 29.54 -169.99 -5.02 16.24 16 10 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 13 N -0.53 -10.19 4.09 -227.73 -0.93 -11.12 16 14 C 0.04 0.75 4.95 -3.70 -0.02 0.74 16 15 C 0.12 1.77 6.59 -3.60 -0.02 1.74 16 16 N -0.58 -9.47 3.01 -171.99 -0.52 -9.99 16 17 C 0.65 10.97 7.57 54.05 0.41 11.38 16 18 O -0.54 -9.98 7.26 -27.68 -0.20 -10.18 16 19 O -0.36 -5.48 8.60 -40.32 -0.35 -5.83 16 20 C 0.14 1.72 1.13 -90.62 -0.10 1.61 16 21 C -0.18 -2.08 8.37 37.16 0.31 -1.77 16 22 C -0.14 -1.31 8.85 37.16 0.33 -0.98 16 23 C -0.18 -2.46 8.37 37.16 0.31 -2.15 16 24 C 0.15 2.38 3.46 -68.64 -0.24 2.14 16 25 H 0.09 1.20 7.92 -51.93 -0.41 0.78 16 26 C 0.53 8.85 4.96 -10.98 -0.05 8.79 16 27 N -0.86 -10.03 8.87 31.22 0.28 -9.76 16 28 O -0.51 -10.79 15.04 -19.69 -0.30 -11.08 16 29 C 0.06 1.20 4.50 -3.69 -0.02 1.18 16 30 H 0.05 0.82 7.77 -51.93 -0.40 0.42 16 31 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.09 2.36 5.94 -51.93 -0.31 2.05 16 34 H 0.03 0.74 5.99 -51.93 -0.31 0.43 16 35 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 36 H 0.09 1.57 5.86 -51.93 -0.30 1.27 16 37 H 0.05 0.95 6.70 -51.93 -0.35 0.60 16 38 H 0.09 1.21 7.04 -51.93 -0.37 0.84 16 39 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.09 1.24 5.88 -51.93 -0.31 0.93 16 43 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.09 1.57 5.88 -51.93 -0.31 1.26 16 47 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 49 H 0.39 3.30 8.67 -40.82 -0.35 2.95 16 50 H 0.40 4.29 8.93 -40.82 -0.36 3.93 16 51 H 0.06 1.31 6.83 -51.93 -0.35 0.95 16 52 H 0.08 1.51 8.06 -51.93 -0.42 1.09 16 LS Contribution 392.05 15.07 5.91 5.91 Total: -1.00 -31.43 392.05 -8.47 -39.90 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: -8.64 Total: 9.28 kcal Atomic # 6 Polarization: 9.47 SS G_CDS: 0.67 Total: 10.14 kcal Atomic # 7 Polarization: -53.83 SS G_CDS: -0.55 Total: -54.37 kcal Atomic # 8 Polarization: -26.25 SS G_CDS: -0.84 Total: -27.10 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.43 -8.47 -39.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255174237.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.908 kcal (2) G-P(sol) polarization free energy of solvation -31.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds