Wall clock time and date at job start Wed Apr 1 2020 00:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46753 * 2 1 4 4 H 1.09002 * 109.47183 * 305.52714 * 3 2 1 5 5 C 1.50698 * 109.47044 * 185.52301 * 3 2 1 6 6 H 1.08002 * 120.00432 * 240.00269 * 5 3 2 7 7 C 1.37879 * 119.99919 * 60.00321 * 5 3 2 8 8 N 1.31513 * 119.99873 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00009 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47113 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47010 * 120.00046 * 9 7 5 12 12 H 1.48495 * 109.47195 * 240.00014 * 9 7 5 13 13 N 1.46901 * 109.46962 * 65.52698 * 3 2 1 14 14 C 1.46896 * 111.00336 * 60.46056 * 13 3 2 15 15 C 1.53235 * 109.34171 * 187.25299 * 14 13 3 16 16 N 1.47079 * 108.52381 * 306.17008 * 15 14 13 17 17 C 1.34768 * 120.88288 * 231.20479 * 16 15 14 18 18 O 1.21513 * 120.00036 * 174.15293 * 17 16 15 19 19 O 1.34638 * 120.00193 * 354.16123 * 17 16 15 20 20 C 1.45199 * 117.00012 * 179.97438 * 19 17 16 21 21 C 1.52999 * 109.47448 * 59.99860 * 20 19 17 22 22 C 1.53009 * 109.46867 * 179.97438 * 20 19 17 23 23 C 1.53001 * 109.47031 * 299.99331 * 20 19 17 24 24 C 1.47080 * 118.23444 * 51.18713 * 16 15 14 25 25 H 1.08994 * 109.63195 * 68.52120 * 24 16 15 26 26 C 1.50702 * 109.78741 * 189.01553 * 24 16 15 27 27 N 1.34779 * 119.99470 * 238.30500 * 26 24 16 28 28 O 1.21277 * 120.00339 * 58.30436 * 26 24 16 29 29 C 1.46904 * 110.99819 * 184.76586 * 13 3 2 30 30 H 1.08997 * 109.47078 * 299.99337 * 1 2 3 31 31 H 1.08998 * 109.47240 * 59.99732 * 1 2 3 32 32 H 1.09004 * 109.46738 * 179.97438 * 1 2 3 33 33 H 1.09007 * 109.46859 * 240.00677 * 2 1 3 34 34 H 1.08993 * 109.47639 * 120.00046 * 2 1 3 35 35 H 0.97002 * 119.99413 * 180.02562 * 8 7 5 36 36 H 1.09000 * 109.49193 * 307.21420 * 14 13 3 37 37 H 1.09002 * 109.49253 * 67.28980 * 14 13 3 38 38 H 1.09000 * 109.62893 * 186.46016 * 15 14 13 39 39 H 1.09003 * 109.78629 * 65.97594 * 15 14 13 40 40 H 1.08994 * 109.47062 * 59.99793 * 21 20 19 41 41 H 1.09001 * 109.47285 * 180.02562 * 21 20 19 42 42 H 1.09003 * 109.46654 * 299.99758 * 21 20 19 43 43 H 1.08997 * 109.47126 * 59.99411 * 22 20 19 44 44 H 1.09001 * 109.46831 * 179.97438 * 22 20 19 45 45 H 1.08999 * 109.46690 * 299.99682 * 22 20 19 46 46 H 1.08996 * 109.46805 * 60.00062 * 23 20 19 47 47 H 1.08998 * 109.46790 * 180.02562 * 23 20 19 48 48 H 1.09005 * 109.47226 * 300.00394 * 23 20 19 49 49 H 0.96998 * 119.99955 * 359.97438 * 27 26 24 50 50 H 0.97001 * 119.99502 * 179.97438 * 27 26 24 51 51 H 1.09005 * 109.48963 * 292.70165 * 29 13 3 52 52 H 1.08992 * 109.49281 * 52.78597 * 29 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5980 1.9842 -0.8364 5 6 3.5407 1.4448 -0.1367 6 1 4.1527 1.8870 0.6355 7 6 4.1326 0.8824 -1.2478 8 7 3.3873 0.3444 -2.1884 9 14 5.9928 0.8858 -1.4177 10 1 6.5969 1.5472 -0.2331 11 1 6.4843 -0.5126 -1.5074 12 1 6.3763 1.6251 -2.6471 13 7 1.6622 2.0954 1.2606 14 6 2.2501 1.3976 2.4118 15 6 1.6900 1.9943 3.7072 16 7 1.9077 3.4487 3.6841 17 6 2.4953 4.0768 4.7217 18 8 2.7638 5.2593 4.6430 19 8 2.7851 3.3940 5.8453 20 6 3.4181 4.1346 6.9219 21 6 2.5026 5.2791 7.3609 22 6 3.6679 3.1989 8.1065 23 6 4.7506 4.7061 6.4331 24 6 1.4674 4.1995 2.4985 25 1 0.3785 4.2020 2.4502 26 6 1.9741 5.6167 2.5748 27 7 1.1039 6.6456 2.5506 28 8 3.1648 5.8313 2.6579 29 6 2.0364 3.5160 1.2505 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 3.8038 -0.0517 -2.9699 36 1 1.9998 0.3379 2.3614 37 1 3.3335 1.5170 2.3949 38 1 2.2063 1.5604 4.5635 39 1 0.6226 1.7849 3.7786 40 1 1.5534 4.8719 7.7091 41 1 2.9780 5.8353 8.1688 42 1 2.3243 5.9458 6.5171 43 1 4.3199 2.3832 7.7940 44 1 4.1435 3.7547 8.9145 45 1 2.7184 2.7921 8.4546 46 1 4.5723 5.3727 5.5894 47 1 5.2259 5.2617 7.2415 48 1 5.4028 3.8907 6.1204 49 1 0.1516 6.4739 2.4837 50 1 1.4300 7.5578 2.6001 51 1 3.1227 3.6059 1.2499 52 1 1.6310 3.9925 0.3580 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255174237.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:38:43 Heat of formation + Delta-G solvation = -117.799129 kcal Electronic energy + Delta-G solvation = -33235.850024 eV Core-core repulsion = 29042.353701 eV Total energy + Delta-G solvation = -4193.496323 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.24264 -40.65335 -39.41032 -37.91298 -36.64898 -35.04118 -34.51209 -34.19086 -32.97388 -32.09240 -29.34302 -28.36526 -28.27387 -27.42017 -25.56191 -24.55160 -23.77638 -22.62183 -21.41275 -20.84282 -20.19974 -19.14574 -18.36143 -17.86329 -17.73153 -17.47575 -17.12067 -16.86646 -16.47445 -15.94256 -15.86487 -15.41719 -15.34958 -15.21513 -14.97196 -14.75284 -14.41362 -14.33641 -14.10704 -13.53000 -13.42352 -13.26770 -13.13177 -13.06363 -12.87805 -12.85820 -12.82752 -12.77698 -12.63443 -12.43324 -12.33978 -12.21954 -12.14796 -11.77012 -11.54424 -11.37614 -11.35237 -11.02695 -10.93234 -10.67192 -10.42382 -10.32052 -9.80785 -9.04293 -8.07387 -6.27173 0.95371 1.29476 1.34358 1.43387 1.71171 2.01776 2.36630 2.44578 2.92908 3.12340 3.39132 3.77715 3.80596 3.82105 3.94344 3.96458 4.09968 4.17415 4.33913 4.49518 4.53186 4.59860 4.61277 4.66451 4.71683 4.76437 4.82511 4.83776 4.89188 4.90602 4.98446 5.02348 5.11008 5.16872 5.24769 5.29574 5.32541 5.40647 5.47337 5.51767 5.51892 5.63947 5.82007 6.02508 6.05278 6.15388 6.29865 6.33880 6.54011 6.57894 6.91682 7.28740 7.43115 7.58132 8.87795 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.012216 B = 0.003792 C = 0.003682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2291.596269 B = 7382.048338 C = 7603.240751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.107 4.107 3 C 0.222 3.778 4 H 0.013 0.987 5 C -0.550 4.550 6 H 0.034 0.966 7 C 0.032 3.968 8 N -0.902 5.902 9 Si 0.933 3.067 10 H -0.287 1.287 11 H -0.274 1.274 12 H -0.281 1.281 13 N -0.511 5.511 14 C 0.045 3.955 15 C 0.128 3.872 16 N -0.588 5.588 17 C 0.638 3.362 18 O -0.557 6.557 19 O -0.365 6.365 20 C 0.126 3.874 21 C -0.172 4.172 22 C -0.133 4.133 23 C -0.179 4.179 24 C 0.156 3.844 25 H 0.131 0.869 26 C 0.531 3.469 27 N -0.833 5.833 28 O -0.564 6.564 29 C 0.069 3.931 30 H 0.065 0.935 31 H 0.032 0.968 32 H 0.045 0.955 33 H 0.061 0.939 34 H 0.038 0.962 35 H 0.262 0.738 36 H 0.097 0.903 37 H 0.006 0.994 38 H 0.099 0.901 39 H 0.104 0.896 40 H 0.068 0.932 41 H 0.089 0.911 42 H 0.058 0.942 43 H 0.063 0.937 44 H 0.102 0.898 45 H 0.076 0.924 46 H 0.053 0.947 47 H 0.091 0.909 48 H 0.048 0.952 49 H 0.415 0.585 50 H 0.406 0.594 51 H 0.008 0.992 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.991 6.213 18.216 21.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.145 4.145 3 C 0.115 3.885 4 H 0.031 0.969 5 C -0.590 4.590 6 H 0.053 0.947 7 C -0.169 4.169 8 N -0.541 5.541 9 Si 0.760 3.240 10 H -0.212 1.212 11 H -0.199 1.199 12 H -0.206 1.206 13 N -0.235 5.235 14 C -0.084 4.084 15 C 0.007 3.993 16 N -0.330 5.330 17 C 0.393 3.607 18 O -0.446 6.446 19 O -0.280 6.280 20 C 0.089 3.911 21 C -0.229 4.229 22 C -0.190 4.190 23 C -0.236 4.236 24 C 0.049 3.951 25 H 0.149 0.851 26 C 0.315 3.685 27 N -0.399 5.399 28 O -0.441 6.441 29 C -0.061 4.061 30 H 0.084 0.916 31 H 0.051 0.949 32 H 0.064 0.936 33 H 0.080 0.920 34 H 0.057 0.943 35 H 0.072 0.928 36 H 0.115 0.885 37 H 0.024 0.976 38 H 0.117 0.883 39 H 0.122 0.878 40 H 0.087 0.913 41 H 0.107 0.893 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.121 0.879 45 H 0.095 0.905 46 H 0.072 0.928 47 H 0.110 0.890 48 H 0.067 0.933 49 H 0.246 0.754 50 H 0.237 0.763 51 H 0.026 0.974 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -8.584 6.403 18.200 21.117 hybrid contribution 2.266 0.398 -0.969 2.496 sum -6.318 6.800 17.231 19.572 Atomic orbital electron populations 1.21575 0.95637 0.99998 1.01074 1.21474 0.94986 0.97335 1.00724 1.19097 0.91273 0.92159 0.85992 0.96886 1.21930 0.94524 1.37686 1.04819 0.94748 1.25397 1.00712 0.95052 0.95705 1.69961 1.35620 1.38949 1.09567 0.85912 0.82803 0.77885 0.77409 1.21223 1.19913 1.20644 1.62442 1.56934 1.00301 1.03814 1.22398 0.95863 0.99728 0.90388 1.22010 1.03159 0.76541 0.97605 1.46879 1.62207 1.09533 1.14407 1.18279 0.77416 0.83868 0.81089 1.91020 1.56694 1.15392 1.81478 1.86285 1.74594 1.43745 1.23410 1.22390 0.91694 0.92682 0.84290 1.22402 0.99762 0.98069 1.02710 1.21865 1.03509 0.99091 0.94507 1.22449 0.96474 1.01594 1.03109 1.21304 1.01028 0.88511 0.84232 0.85119 1.20002 0.86379 0.87540 0.74613 1.43442 1.10561 1.08502 1.77351 1.90713 1.18569 1.85742 1.49065 1.21987 0.97274 0.91099 0.95712 0.91629 0.94857 0.93579 0.92023 0.94291 0.92809 0.88516 0.97607 0.88254 0.87770 0.91342 0.89252 0.92293 0.91824 0.87916 0.90498 0.92763 0.88984 0.93289 0.75428 0.76273 0.97376 0.89942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.40 9.80 71.98 0.71 -3.69 16 2 C -0.11 -4.66 5.07 30.60 0.16 -4.50 16 3 C 0.22 10.42 1.74 44.17 0.08 10.50 16 4 H 0.01 0.70 8.07 -2.39 -0.02 0.68 16 5 C -0.55 -29.80 7.22 25.60 0.18 -29.62 16 6 H 0.03 1.99 5.86 -2.91 -0.02 1.97 16 7 C 0.03 1.76 5.29 84.66 0.45 2.20 16 8 N -0.90 -50.29 11.29 21.45 0.24 -50.05 16 9 Si 0.93 44.90 29.54 68.60 2.03 46.92 16 10 H -0.29 -14.27 7.11 99.48 0.71 -13.57 16 11 H -0.27 -12.67 7.11 99.48 0.71 -11.97 16 12 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 13 N -0.51 -19.67 4.09 -874.39 -3.58 -23.25 16 14 C 0.05 1.62 4.95 86.38 0.43 2.05 16 15 C 0.13 3.57 6.59 86.35 0.57 4.14 16 16 N -0.59 -18.59 3.01 -928.48 -2.79 -21.38 16 17 C 0.64 21.48 7.57 129.79 0.98 22.47 16 18 O -0.56 -20.79 7.26 27.83 0.20 -20.58 16 19 O -0.37 -10.63 8.60 -55.48 -0.48 -11.11 16 20 C 0.13 2.95 1.13 -10.79 -0.01 2.94 16 21 C -0.17 -3.63 8.37 71.98 0.60 -3.03 16 22 C -0.13 -2.11 8.85 71.99 0.64 -1.47 16 23 C -0.18 -4.77 8.37 71.98 0.60 -4.16 16 24 C 0.16 4.81 3.46 44.22 0.15 4.97 16 25 H 0.13 3.02 7.92 -2.39 -0.02 3.00 16 26 C 0.53 17.59 4.96 87.66 0.43 18.02 16 27 N -0.83 -18.28 8.87 -173.53 -1.54 -19.82 16 28 O -0.56 -24.94 15.04 21.12 0.32 -24.63 16 29 C 0.07 2.69 4.50 86.38 0.39 3.08 16 30 H 0.06 2.06 7.77 -2.39 -0.02 2.04 16 31 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 33 H 0.06 3.13 5.94 -2.38 -0.01 3.11 16 34 H 0.04 1.63 5.99 -2.39 -0.01 1.62 16 35 H 0.26 13.99 8.31 -92.71 -0.77 13.22 16 36 H 0.10 3.31 5.86 -2.39 -0.01 3.30 16 37 H 0.01 0.25 6.70 -2.39 -0.02 0.23 16 38 H 0.10 2.56 7.04 -2.39 -0.02 2.54 16 39 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 40 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.06 1.62 5.88 -2.39 -0.01 1.60 16 43 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 46 H 0.05 1.90 5.88 -2.39 -0.01 1.88 16 47 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 48 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 49 H 0.41 5.80 8.67 -92.71 -0.80 5.00 16 50 H 0.41 8.27 8.93 -92.71 -0.83 7.44 16 51 H 0.01 0.39 6.83 -2.38 -0.02 0.37 16 52 H 0.08 3.12 8.06 -2.39 -0.02 3.10 16 Total: -1.00 -73.13 392.05 0.07 -73.07 By element: Atomic # 1 Polarization: 27.62 SS G_CDS: -0.69 Total: 26.93 kcal Atomic # 6 Polarization: 17.55 SS G_CDS: 6.36 Total: 23.90 kcal Atomic # 7 Polarization: -106.84 SS G_CDS: -7.67 Total: -114.51 kcal Atomic # 8 Polarization: -56.36 SS G_CDS: 0.04 Total: -56.32 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.92 kcal Total: -73.13 0.07 -73.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255174237.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.733 kcal (2) G-P(sol) polarization free energy of solvation -73.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds