Wall clock time and date at job start Wed Apr 1 2020 01:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42903 * 114.00141 * 2 1 4 4 C 1.50701 * 109.47057 * 179.97438 * 3 2 1 5 5 O 1.21273 * 120.00054 * 0.02562 * 4 3 2 6 6 N 1.34775 * 119.99565 * 179.97438 * 4 3 2 7 7 C 1.46505 * 119.99569 * 180.02562 * 6 4 3 8 8 H 1.09001 * 109.47372 * 325.00085 * 7 6 4 9 9 C 1.50703 * 109.47064 * 205.00141 * 7 6 4 10 10 O 1.21278 * 119.99985 * 0.02562 * 9 7 6 11 11 N 1.34779 * 119.99944 * 180.02562 * 9 7 6 12 12 C 1.46499 * 119.99872 * 180.02562 * 11 9 7 13 13 C 1.53000 * 109.46840 * 180.02562 * 12 11 9 14 14 H 1.08996 * 112.85005 * 316.18669 * 13 12 11 15 15 C 1.53775 * 113.61825 * 87.50296 * 13 12 11 16 16 C 1.53776 * 87.08393 * 139.97637 * 15 13 12 17 17 H 1.09007 * 113.68892 * 89.12809 * 16 15 13 18 18 N 1.46499 * 113.61829 * 220.01715 * 16 15 13 19 19 C 1.36938 * 120.00087 * 252.50473 * 18 16 15 20 20 H 1.08002 * 119.99964 * 359.97438 * 19 18 16 21 21 C 1.38817 * 120.00035 * 180.02562 * 19 18 16 22 22 N 1.31619 * 119.99727 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00143 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46991 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47296 * 119.99606 * 23 21 19 26 26 H 1.48501 * 109.47029 * 239.99878 * 23 21 19 27 27 C 1.53774 * 87.08069 * 334.56900 * 16 15 13 28 28 C 1.52996 * 109.46998 * 85.00467 * 7 6 4 29 29 C 1.53005 * 109.47245 * 299.99585 * 28 7 6 30 30 C 1.52993 * 109.47473 * 59.99985 * 28 7 6 31 31 H 1.08993 * 109.47157 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47312 * 300.00496 * 1 2 3 33 33 H 1.09006 * 109.46762 * 60.00279 * 1 2 3 34 34 H 1.09004 * 109.47078 * 59.99319 * 3 2 1 35 35 H 1.09007 * 109.46757 * 299.99743 * 3 2 1 36 36 H 0.96996 * 120.00725 * 0.02562 * 6 4 3 37 37 H 0.97000 * 119.99708 * 359.97438 * 11 9 7 38 38 H 1.09002 * 109.47391 * 59.99686 * 12 11 9 39 39 H 1.09001 * 109.46813 * 299.99742 * 12 11 9 40 40 H 1.09005 * 113.61502 * 254.53312 * 15 13 12 41 41 H 1.08999 * 113.61676 * 25.42734 * 15 13 12 42 42 H 0.96997 * 119.99773 * 72.49513 * 18 16 15 43 43 H 0.96997 * 119.99788 * 179.97438 * 22 21 19 44 44 H 1.09006 * 113.61277 * 270.88016 * 27 16 15 45 45 H 1.09006 * 113.61790 * 139.97929 * 27 16 15 46 46 H 1.09004 * 109.47108 * 179.97438 * 28 7 6 47 47 H 1.09004 * 109.46832 * 60.00120 * 29 28 7 48 48 H 1.08992 * 109.47457 * 180.02562 * 29 28 7 49 49 H 1.09001 * 109.46962 * 300.00283 * 29 28 7 50 50 H 1.08992 * 109.47399 * 59.99740 * 30 28 7 51 51 H 1.09002 * 109.47722 * 180.02562 * 30 28 7 52 52 H 1.09004 * 109.46862 * 300.00038 * 30 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1864 0.0006 5 8 4.0341 0.0916 0.0006 6 7 4.2765 2.2968 0.0002 7 6 5.7369 2.1811 0.0003 8 1 6.0327 1.3134 0.5900 9 6 6.3394 3.4253 0.6003 10 8 5.6198 4.3203 0.9900 11 7 7.6780 3.5434 0.7039 12 6 8.2637 4.7527 1.2877 13 6 9.7889 4.6324 1.2865 14 1 10.1364 3.6511 1.6097 15 6 10.4445 5.1221 -0.0155 16 6 11.5436 5.7419 0.8635 17 1 12.3725 5.0650 1.0705 18 7 11.9870 7.0610 0.4056 19 6 13.2160 7.2046 -0.1810 20 1 13.8586 6.3455 -0.3058 21 6 13.6365 8.4546 -0.6144 22 7 12.8536 9.5016 -0.4619 23 14 15.3132 8.6507 -1.4140 24 1 15.9938 7.3318 -1.4666 25 1 15.1458 9.1771 -2.7924 26 1 16.1333 9.5989 -0.6181 27 6 10.4995 5.8001 1.9909 28 6 6.2354 2.0150 -1.4367 29 6 5.6238 0.7518 -2.0459 30 6 5.8204 3.2329 -2.2644 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8901 34 1 1.6886 1.8464 0.8900 35 1 1.6887 1.8464 -0.8901 36 1 3.8594 3.1725 -0.0001 37 1 8.2536 2.8273 0.3926 38 1 7.9089 4.8704 2.3116 39 1 7.9675 5.6206 0.6986 40 1 10.8006 4.3148 -0.6556 41 1 9.8487 5.8590 -0.5540 42 1 11.4100 7.8325 0.5179 43 1 13.1475 10.3750 -0.7644 44 1 9.9187 6.7225 2.0010 45 1 10.9000 5.5402 2.9709 46 1 7.3221 1.9294 -1.4367 47 1 4.5371 0.8379 -2.0459 48 1 5.9792 0.6332 -3.0694 49 1 5.9195 -0.1159 -1.4562 50 1 6.2561 4.1328 -1.8305 51 1 6.1751 3.1144 -3.2883 52 1 4.7337 3.3190 -2.2644 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264405890.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:04:11 Heat of formation + Delta-G solvation = -92.009454 kcal Electronic energy + Delta-G solvation = -30040.171328 eV Core-core repulsion = 25847.793329 eV Total energy + Delta-G solvation = -4192.377999 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.03219 -39.65167 -38.59576 -37.86857 -36.23073 -34.91477 -33.55294 -33.21530 -30.41626 -29.76406 -28.38548 -27.37215 -26.75916 -25.70929 -25.12754 -23.83336 -21.70669 -21.18349 -21.02159 -19.92492 -19.13628 -18.25958 -17.45511 -17.07508 -16.94363 -16.45673 -16.41308 -16.05580 -15.48845 -15.19074 -15.10065 -14.70698 -14.55299 -14.24995 -13.95184 -13.80718 -13.57640 -13.44974 -13.12555 -12.93372 -12.74998 -12.57523 -12.19947 -11.97429 -11.93787 -11.87357 -11.67130 -11.44527 -11.34316 -11.26580 -11.14289 -10.87949 -10.56230 -10.32629 -10.28424 -10.14671 -10.13178 -9.98240 -9.86782 -9.55095 -9.38896 -9.15339 -8.90266 -6.99292 -5.81262 -3.10133 2.20383 2.26192 2.37996 3.04807 3.40461 3.46241 3.48464 3.63012 4.24527 4.35957 4.43315 4.55748 4.59025 4.62442 4.68971 4.83209 4.85269 4.89607 4.90983 4.95438 5.15755 5.17733 5.20486 5.27789 5.43323 5.44714 5.45756 5.60332 5.68679 5.75027 5.76299 5.78232 5.88228 5.94881 6.03455 6.05652 6.13625 6.16256 6.26125 6.30948 6.37085 6.47580 6.55185 6.78164 7.07110 7.11115 7.26874 7.67031 7.84539 7.94783 8.37288 9.48537 10.06578 10.40637 11.41146 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.026352 B = 0.001742 C = 0.001708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.302115 B =16065.793812 C =16388.163322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.366 6.366 3 C 0.043 3.957 4 C 0.517 3.483 5 O -0.514 6.514 6 N -0.708 5.708 7 C 0.134 3.866 8 H 0.115 0.885 9 C 0.512 3.488 10 O -0.540 6.540 11 N -0.717 5.717 12 C 0.132 3.868 13 C -0.128 4.128 14 H 0.089 0.911 15 C -0.160 4.160 16 C 0.165 3.835 17 H 0.076 0.924 18 N -0.713 5.713 19 C -0.244 4.244 20 H 0.072 0.928 21 C -0.013 4.013 22 N -0.932 5.932 23 Si 0.907 3.093 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.291 1.291 27 C -0.142 4.142 28 C -0.102 4.102 29 C -0.138 4.138 30 C -0.150 4.150 31 H 0.091 0.909 32 H 0.044 0.956 33 H 0.044 0.956 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.410 0.590 37 H 0.402 0.598 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.054 0.946 41 H 0.078 0.922 42 H 0.385 0.615 43 H 0.255 0.745 44 H 0.080 0.920 45 H 0.061 0.939 46 H 0.085 0.915 47 H 0.054 0.946 48 H 0.052 0.948 49 H 0.065 0.935 50 H 0.057 0.943 51 H 0.061 0.939 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.039 -18.087 0.503 29.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.284 6.284 3 C -0.037 4.037 4 C 0.303 3.697 5 O -0.388 6.388 6 N -0.364 5.364 7 C 0.025 3.975 8 H 0.132 0.868 9 C 0.297 3.703 10 O -0.417 6.417 11 N -0.368 5.368 12 C 0.009 3.991 13 C -0.147 4.147 14 H 0.107 0.893 15 C -0.201 4.201 16 C 0.053 3.947 17 H 0.094 0.906 18 N -0.351 5.351 19 C -0.375 4.375 20 H 0.090 0.910 21 C -0.209 4.209 22 N -0.580 5.580 23 Si 0.738 3.262 24 H -0.205 1.205 25 H -0.219 1.219 26 H -0.218 1.218 27 C -0.182 4.182 28 C -0.122 4.122 29 C -0.195 4.195 30 C -0.207 4.207 31 H 0.110 0.890 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.247 0.753 37 H 0.237 0.763 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.073 0.927 41 H 0.096 0.904 42 H 0.219 0.781 43 H 0.065 0.935 44 H 0.099 0.901 45 H 0.080 0.920 46 H 0.104 0.896 47 H 0.073 0.927 48 H 0.071 0.929 49 H 0.084 0.916 50 H 0.076 0.924 51 H 0.080 0.920 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -22.860 -18.382 0.721 29.342 hybrid contribution 0.531 0.858 -0.566 1.157 sum -22.329 -17.524 0.155 28.384 Atomic orbital electron populations 1.22853 0.80206 1.03404 1.00232 1.88010 1.19898 1.25040 1.95455 1.22209 0.91395 0.87135 1.02935 1.20139 0.88661 0.84427 0.76520 1.90747 1.74311 1.26345 1.47391 1.45529 1.05365 1.09682 1.75816 1.20894 0.81298 0.97404 0.97905 0.86767 1.20441 0.82952 0.88246 0.78704 1.90703 1.60418 1.41369 1.49226 1.45988 1.06152 1.21713 1.62936 1.21490 0.92744 0.86512 0.98320 1.22648 0.92023 0.99533 1.00500 0.89294 1.23945 1.00367 1.00202 0.95618 1.21520 0.92527 0.89048 0.91580 0.90648 1.42416 1.18539 1.03988 1.70107 1.19354 0.93402 0.93726 1.31067 0.91026 1.24770 0.98544 0.95677 1.01916 1.69670 1.36691 0.99056 1.52562 0.86122 0.83786 0.77507 0.78792 1.20520 1.21856 1.21843 1.23452 0.98723 0.97100 0.98932 1.21537 1.00880 0.97111 0.92681 1.21867 1.00996 0.96465 1.00174 1.21855 1.01645 0.97032 1.00165 0.89006 0.93713 0.93727 0.89986 0.90091 0.75293 0.76298 0.91615 0.91027 0.92725 0.90355 0.78083 0.93497 0.90115 0.91976 0.89629 0.92669 0.92877 0.91576 0.92355 0.91959 0.92535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 101.05 1.11 1.26 16 2 O -0.37 -3.38 10.24 -55.14 -0.56 -3.94 16 3 C 0.04 0.30 6.42 36.01 0.23 0.53 16 4 C 0.52 4.95 6.26 -10.99 -0.07 4.88 16 5 O -0.51 -6.69 13.62 -14.35 -0.20 -6.88 16 6 N -0.71 -6.04 4.07 -54.93 -0.22 -6.26 16 7 C 0.13 1.20 2.42 -69.08 -0.17 1.03 16 8 H 0.11 1.06 7.58 -51.93 -0.39 0.66 16 9 C 0.51 5.54 5.96 -10.98 -0.07 5.47 16 10 O -0.54 -7.52 15.84 5.56 0.09 -7.43 16 11 N -0.72 -7.07 5.45 -60.29 -0.33 -7.40 16 12 C 0.13 1.57 5.51 -4.04 -0.02 1.55 16 13 C -0.13 -1.57 3.75 -89.81 -0.34 -1.91 16 14 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 15 C -0.16 -2.49 7.43 -25.92 -0.19 -2.68 16 16 C 0.17 3.08 4.48 -67.13 -0.30 2.78 16 17 H 0.08 1.40 8.10 -51.93 -0.42 0.98 16 18 N -0.71 -17.39 5.40 -52.64 -0.28 -17.67 16 19 C -0.24 -6.66 9.97 -15.06 -0.15 -6.81 16 20 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 21 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 22 N -0.93 -27.84 13.06 55.49 0.72 -27.11 16 23 Si 0.91 22.08 29.55 -169.99 -5.02 17.05 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 26 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 27 C -0.14 -2.16 7.39 -25.92 -0.19 -2.35 16 28 C -0.10 -0.83 2.70 -90.62 -0.24 -1.08 16 29 C -0.14 -1.22 7.72 37.16 0.29 -0.94 16 30 C -0.15 -1.28 8.79 37.15 0.33 -0.95 16 31 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 33 H 0.04 0.17 8.14 -51.93 -0.42 -0.26 16 34 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.41 3.15 7.79 -40.82 -0.32 2.84 16 37 H 0.40 3.09 7.89 -40.82 -0.32 2.77 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.07 0.97 7.84 -51.93 -0.41 0.57 16 40 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.08 1.35 7.89 -51.93 -0.41 0.94 16 42 H 0.39 10.03 7.92 -40.82 -0.32 9.71 16 43 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 44 H 0.08 1.29 8.08 -51.93 -0.42 0.87 16 45 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 46 H 0.09 0.61 7.56 -51.93 -0.39 0.22 16 47 H 0.05 0.54 5.78 -51.93 -0.30 0.24 16 48 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.07 0.66 7.53 -51.93 -0.39 0.27 16 50 H 0.06 0.58 7.22 -51.93 -0.37 0.21 16 51 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 52 H 0.06 0.46 7.60 -51.93 -0.39 0.06 16 LS Contribution 418.35 15.07 6.30 6.30 Total: -1.00 -34.15 418.35 -8.45 -42.60 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: -9.06 Total: 10.41 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: 0.12 Total: 0.33 kcal Atomic # 7 Polarization: -58.34 SS G_CDS: -0.11 Total: -58.45 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: -0.67 Total: -18.25 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -34.15 -8.45 -42.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264405890.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.412 kcal (2) G-P(sol) polarization free energy of solvation -34.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds