Wall clock time and date at job start Wed Apr 1 2020 01:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42903 * 114.00141 * 2 1 4 4 C 1.50701 * 109.47057 * 179.97438 * 3 2 1 5 5 O 1.21273 * 120.00054 * 0.02562 * 4 3 2 6 6 N 1.34775 * 119.99565 * 179.97438 * 4 3 2 7 7 C 1.46505 * 119.99569 * 180.02562 * 6 4 3 8 8 H 1.09001 * 109.47372 * 325.00085 * 7 6 4 9 9 C 1.50703 * 109.47064 * 205.00141 * 7 6 4 10 10 O 1.21278 * 119.99985 * 0.02562 * 9 7 6 11 11 N 1.34779 * 119.99944 * 180.02562 * 9 7 6 12 12 C 1.46499 * 119.99872 * 180.02562 * 11 9 7 13 13 C 1.53000 * 109.46840 * 180.02562 * 12 11 9 14 14 H 1.08996 * 112.85005 * 316.18669 * 13 12 11 15 15 C 1.53775 * 113.61825 * 87.50296 * 13 12 11 16 16 C 1.53776 * 87.08393 * 139.97637 * 15 13 12 17 17 H 1.09007 * 113.68892 * 89.12809 * 16 15 13 18 18 N 1.46499 * 113.61829 * 220.01715 * 16 15 13 19 19 C 1.36938 * 120.00087 * 252.50473 * 18 16 15 20 20 H 1.08002 * 119.99964 * 359.97438 * 19 18 16 21 21 C 1.38817 * 120.00035 * 180.02562 * 19 18 16 22 22 N 1.31619 * 119.99727 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00143 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46991 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47296 * 119.99606 * 23 21 19 26 26 H 1.48501 * 109.47029 * 239.99878 * 23 21 19 27 27 C 1.53774 * 87.08069 * 334.56900 * 16 15 13 28 28 C 1.52996 * 109.46998 * 85.00467 * 7 6 4 29 29 C 1.53005 * 109.47245 * 299.99585 * 28 7 6 30 30 C 1.52993 * 109.47473 * 59.99985 * 28 7 6 31 31 H 1.08993 * 109.47157 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47312 * 300.00496 * 1 2 3 33 33 H 1.09006 * 109.46762 * 60.00279 * 1 2 3 34 34 H 1.09004 * 109.47078 * 59.99319 * 3 2 1 35 35 H 1.09007 * 109.46757 * 299.99743 * 3 2 1 36 36 H 0.96996 * 120.00725 * 0.02562 * 6 4 3 37 37 H 0.97000 * 119.99708 * 359.97438 * 11 9 7 38 38 H 1.09002 * 109.47391 * 59.99686 * 12 11 9 39 39 H 1.09001 * 109.46813 * 299.99742 * 12 11 9 40 40 H 1.09005 * 113.61502 * 254.53312 * 15 13 12 41 41 H 1.08999 * 113.61676 * 25.42734 * 15 13 12 42 42 H 0.96997 * 119.99773 * 72.49513 * 18 16 15 43 43 H 0.96997 * 119.99788 * 179.97438 * 22 21 19 44 44 H 1.09006 * 113.61277 * 270.88016 * 27 16 15 45 45 H 1.09006 * 113.61790 * 139.97929 * 27 16 15 46 46 H 1.09004 * 109.47108 * 179.97438 * 28 7 6 47 47 H 1.09004 * 109.46832 * 60.00120 * 29 28 7 48 48 H 1.08992 * 109.47457 * 180.02562 * 29 28 7 49 49 H 1.09001 * 109.46962 * 300.00283 * 29 28 7 50 50 H 1.08992 * 109.47399 * 59.99740 * 30 28 7 51 51 H 1.09002 * 109.47722 * 180.02562 * 30 28 7 52 52 H 1.09004 * 109.46862 * 300.00038 * 30 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1864 0.0006 5 8 4.0341 0.0916 0.0006 6 7 4.2765 2.2968 0.0002 7 6 5.7369 2.1811 0.0003 8 1 6.0327 1.3134 0.5900 9 6 6.3394 3.4253 0.6003 10 8 5.6198 4.3203 0.9900 11 7 7.6780 3.5434 0.7039 12 6 8.2637 4.7527 1.2877 13 6 9.7889 4.6324 1.2865 14 1 10.1364 3.6511 1.6097 15 6 10.4445 5.1221 -0.0155 16 6 11.5436 5.7419 0.8635 17 1 12.3725 5.0650 1.0705 18 7 11.9870 7.0610 0.4056 19 6 13.2160 7.2046 -0.1810 20 1 13.8586 6.3455 -0.3058 21 6 13.6365 8.4546 -0.6144 22 7 12.8536 9.5016 -0.4619 23 14 15.3132 8.6507 -1.4140 24 1 15.9938 7.3318 -1.4666 25 1 15.1458 9.1771 -2.7924 26 1 16.1333 9.5989 -0.6181 27 6 10.4995 5.8001 1.9909 28 6 6.2354 2.0150 -1.4367 29 6 5.6238 0.7518 -2.0459 30 6 5.8204 3.2329 -2.2644 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8901 34 1 1.6886 1.8464 0.8900 35 1 1.6887 1.8464 -0.8901 36 1 3.8594 3.1725 -0.0001 37 1 8.2536 2.8273 0.3926 38 1 7.9089 4.8704 2.3116 39 1 7.9675 5.6206 0.6986 40 1 10.8006 4.3148 -0.6556 41 1 9.8487 5.8590 -0.5540 42 1 11.4100 7.8325 0.5179 43 1 13.1475 10.3750 -0.7644 44 1 9.9187 6.7225 2.0010 45 1 10.9000 5.5402 2.9709 46 1 7.3221 1.9294 -1.4367 47 1 4.5371 0.8379 -2.0459 48 1 5.9792 0.6332 -3.0694 49 1 5.9195 -0.1159 -1.4562 50 1 6.2561 4.1328 -1.8305 51 1 6.1751 3.1144 -3.2883 52 1 4.7337 3.3190 -2.2644 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264405890.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:04:10 Heat of formation + Delta-G solvation = -116.782154 kcal Electronic energy + Delta-G solvation = -30041.245553 eV Core-core repulsion = 25847.793329 eV Total energy + Delta-G solvation = -4193.452224 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.83090 -40.54278 -39.77751 -38.49106 -37.00969 -36.11828 -35.08045 -34.14104 -32.20150 -30.47158 -29.31115 -28.08009 -27.58322 -26.43047 -26.41565 -25.61466 -22.56345 -22.41202 -21.83489 -20.76107 -20.38224 -19.18110 -18.88648 -18.15394 -17.55912 -17.25492 -17.20839 -16.83113 -16.59425 -16.25106 -16.12856 -15.88687 -15.56947 -15.28128 -15.03494 -14.90484 -14.69975 -14.53845 -14.08431 -13.94639 -13.40596 -13.35016 -13.24537 -13.20634 -13.03011 -12.91306 -12.86407 -12.66138 -12.40296 -12.35793 -12.16416 -12.07337 -12.04365 -11.82862 -11.57599 -11.53337 -11.11200 -10.92620 -10.87487 -10.79147 -10.75875 -10.18009 -10.07052 -8.95935 -7.93905 -5.21716 1.45207 1.48279 1.48502 1.51017 1.58586 1.63228 2.25170 2.57472 3.10711 3.38096 3.48368 3.67184 3.74009 3.76833 3.79056 3.89712 3.95498 4.13279 4.20554 4.25790 4.28122 4.37392 4.43341 4.45353 4.51544 4.57233 4.57871 4.60549 4.76409 4.78167 4.88052 4.90760 4.97432 5.00254 5.01499 5.07230 5.07641 5.24590 5.25104 5.34306 5.35530 5.41672 5.43765 5.54556 5.75374 6.01714 6.28856 6.43486 6.46923 7.10503 7.15890 7.34467 8.13333 8.34552 9.29780 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.026352 B = 0.001742 C = 0.001708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.302115 B =16065.793812 C =16388.163322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.403 6.403 3 C 0.043 3.957 4 C 0.515 3.485 5 O -0.553 6.553 6 N -0.702 5.702 7 C 0.139 3.861 8 H 0.115 0.885 9 C 0.515 3.485 10 O -0.572 6.572 11 N -0.707 5.707 12 C 0.140 3.860 13 C -0.096 4.096 14 H 0.121 0.879 15 C -0.151 4.151 16 C 0.141 3.859 17 H 0.079 0.921 18 N -0.730 5.730 19 C -0.240 4.240 20 H 0.079 0.921 21 C -0.079 4.079 22 N -0.972 5.972 23 Si 0.971 3.029 24 H -0.264 1.264 25 H -0.296 1.296 26 H -0.295 1.295 27 C -0.137 4.137 28 C -0.097 4.097 29 C -0.130 4.130 30 C -0.146 4.146 31 H 0.095 0.905 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.103 0.897 35 H 0.107 0.893 36 H 0.415 0.585 37 H 0.416 0.584 38 H 0.067 0.933 39 H 0.051 0.949 40 H 0.068 0.932 41 H 0.057 0.943 42 H 0.372 0.628 43 H 0.250 0.750 44 H 0.067 0.933 45 H 0.077 0.923 46 H 0.100 0.900 47 H 0.043 0.957 48 H 0.061 0.939 49 H 0.054 0.946 50 H 0.043 0.957 51 H 0.067 0.933 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.420 -19.849 0.463 30.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.322 6.322 3 C -0.036 4.036 4 C 0.302 3.698 5 O -0.430 6.430 6 N -0.358 5.358 7 C 0.030 3.970 8 H 0.133 0.867 9 C 0.301 3.699 10 O -0.451 6.451 11 N -0.358 5.358 12 C 0.016 3.984 13 C -0.115 4.115 14 H 0.139 0.861 15 C -0.192 4.192 16 C 0.031 3.969 17 H 0.097 0.903 18 N -0.367 5.367 19 C -0.372 4.372 20 H 0.097 0.903 21 C -0.271 4.271 22 N -0.623 5.623 23 Si 0.801 3.199 24 H -0.188 1.188 25 H -0.223 1.223 26 H -0.223 1.223 27 C -0.176 4.176 28 C -0.117 4.117 29 C -0.187 4.187 30 C -0.204 4.204 31 H 0.113 0.887 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.121 0.879 35 H 0.125 0.875 36 H 0.253 0.747 37 H 0.253 0.747 38 H 0.085 0.915 39 H 0.070 0.930 40 H 0.087 0.913 41 H 0.076 0.924 42 H 0.204 0.796 43 H 0.058 0.942 44 H 0.086 0.914 45 H 0.095 0.905 46 H 0.118 0.882 47 H 0.062 0.938 48 H 0.080 0.920 49 H 0.073 0.927 50 H 0.062 0.938 51 H 0.086 0.914 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -23.246 -20.211 0.688 30.811 hybrid contribution 0.591 1.344 -0.519 1.557 sum -22.655 -18.867 0.169 29.482 Atomic orbital electron populations 1.23030 0.78373 1.04169 1.01557 1.87953 1.22011 1.26425 1.95779 1.22340 0.89312 0.86881 1.05110 1.20662 0.89866 0.83835 0.75424 1.90726 1.75191 1.27706 1.49378 1.45522 1.05203 1.09824 1.75219 1.20856 0.81634 0.96211 0.98297 0.86722 1.20697 0.82910 0.88268 0.78047 1.90693 1.61184 1.42600 1.50637 1.45836 1.06147 1.21413 1.62443 1.21256 0.92318 0.86644 0.98174 1.22469 0.91957 0.99808 0.97241 0.86111 1.23705 0.98944 0.99856 0.96657 1.21980 0.93913 0.86892 0.94088 0.90269 1.42634 1.17723 1.05763 1.70602 1.19775 0.94264 0.93759 1.29452 0.90304 1.25565 1.02145 0.95673 1.03702 1.69826 1.38547 0.99260 1.54630 0.85098 0.79801 0.77787 0.77243 1.18803 1.22317 1.22277 1.23330 0.97626 0.97935 0.98745 1.21524 1.01692 0.96586 0.91848 1.21769 1.00283 0.96196 1.00493 1.21821 1.01796 0.96369 1.00402 0.88661 0.92449 0.92276 0.87918 0.87541 0.74692 0.74676 0.91471 0.93011 0.91348 0.92441 0.79650 0.94164 0.91414 0.90464 0.88163 0.93756 0.91987 0.92721 0.93833 0.91370 0.92257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 11.01 113.37 1.25 1.46 16 2 O -0.40 -7.04 10.24 -129.94 -1.33 -8.37 16 3 C 0.04 0.53 6.42 71.24 0.46 0.99 16 4 C 0.52 9.41 6.26 87.66 0.55 9.96 16 5 O -0.55 -14.25 13.62 16.03 0.22 -14.03 16 6 N -0.70 -11.19 4.07 -446.10 -1.82 -13.01 16 7 C 0.14 2.31 2.42 44.24 0.11 2.41 16 8 H 0.12 1.97 7.58 -2.39 -0.02 1.95 16 9 C 0.51 10.40 5.96 87.66 0.52 10.92 16 10 O -0.57 -15.39 15.84 -3.02 -0.05 -15.44 16 11 N -0.71 -12.40 5.45 -463.05 -2.52 -14.92 16 12 C 0.14 3.06 5.51 86.38 0.48 3.54 16 13 C -0.10 -2.11 3.75 -10.27 -0.04 -2.15 16 14 H 0.12 2.02 8.14 -2.39 -0.02 2.00 16 15 C -0.15 -4.45 7.43 31.12 0.23 -4.22 16 16 C 0.14 5.09 4.48 45.51 0.20 5.30 16 17 H 0.08 2.80 8.10 -2.38 -0.02 2.78 16 18 N -0.73 -35.91 5.40 -320.45 -1.73 -37.64 16 19 C -0.24 -13.11 9.97 84.03 0.84 -12.27 16 20 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 21 C -0.08 -4.50 5.50 84.86 0.47 -4.03 16 22 N -0.97 -59.44 13.06 21.65 0.28 -59.15 16 23 Si 0.97 45.72 29.55 68.60 2.03 47.74 16 24 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 25 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 26 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 27 C -0.14 -3.94 7.39 31.12 0.23 -3.71 16 28 C -0.10 -1.42 2.70 -10.80 -0.03 -1.45 16 29 C -0.13 -2.16 7.72 71.98 0.56 -1.60 16 30 C -0.15 -2.29 8.79 71.98 0.63 -1.66 16 31 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.06 0.34 8.14 -2.38 -0.02 0.32 16 33 H 0.06 0.33 8.14 -2.38 -0.02 0.31 16 34 H 0.10 0.82 8.14 -2.38 -0.02 0.80 16 35 H 0.11 0.74 8.14 -2.38 -0.02 0.72 16 36 H 0.42 5.89 7.79 -92.71 -0.72 5.17 16 37 H 0.42 5.09 7.89 -92.71 -0.73 4.36 16 38 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.05 1.38 7.84 -2.39 -0.02 1.36 16 40 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 41 H 0.06 1.96 7.89 -2.39 -0.02 1.94 16 42 H 0.37 19.93 7.92 -92.71 -0.73 19.19 16 43 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 44 H 0.07 2.15 8.08 -2.38 -0.02 2.13 16 45 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 46 H 0.10 1.18 7.56 -2.38 -0.02 1.17 16 47 H 0.04 0.83 5.78 -2.38 -0.01 0.82 16 48 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 49 H 0.05 1.04 7.53 -2.39 -0.02 1.03 16 50 H 0.04 0.82 7.22 -2.39 -0.02 0.80 16 51 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 52 H 0.06 0.88 7.60 -2.38 -0.02 0.86 16 Total: -1.00 -75.34 418.35 0.27 -75.06 By element: Atomic # 1 Polarization: 37.53 SS G_CDS: -1.25 Total: 36.27 kcal Atomic # 6 Polarization: -2.96 SS G_CDS: 6.45 Total: 3.49 kcal Atomic # 7 Polarization: -118.93 SS G_CDS: -5.79 Total: -124.72 kcal Atomic # 8 Polarization: -36.68 SS G_CDS: -1.16 Total: -37.84 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.74 kcal Total: -75.34 0.27 -75.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264405890.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.721 kcal (2) G-P(sol) polarization free energy of solvation -75.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds