Wall clock time and date at job start Wed Apr 1 2020 00:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47452 * 2 1 4 4 H 1.08994 * 109.47446 * 305.00020 * 3 2 1 5 5 C 1.53000 * 109.47210 * 184.99769 * 3 2 1 6 6 O 1.42904 * 109.46896 * 64.99844 * 3 2 1 7 7 C 1.42895 * 113.99970 * 210.00146 * 6 3 2 8 8 C 1.50697 * 109.47303 * 180.02562 * 7 6 3 9 9 O 1.21285 * 119.99770 * 359.97438 * 8 7 6 10 10 N 1.34778 * 120.00413 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00319 * 179.97438 * 10 8 7 12 12 H 1.09002 * 110.36471 * 324.27749 * 11 10 8 13 13 C 1.54262 * 110.32117 * 86.45453 * 11 10 8 14 14 C 1.54385 * 105.14590 * 118.94932 * 13 11 10 15 15 N 1.48560 * 104.59445 * 23.80120 * 14 13 11 16 16 C 1.46903 * 110.99703 * 200.95695 * 15 14 13 17 17 C 1.50691 * 109.47328 * 290.13011 * 16 15 14 18 18 O 1.21298 * 120.00025 * 359.97438 * 17 16 15 19 19 N 1.34776 * 119.99939 * 180.02562 * 17 16 15 20 20 C 1.37109 * 119.99809 * 179.97438 * 19 17 16 21 21 H 1.07991 * 120.00109 * 359.97438 * 20 19 17 22 22 C 1.38948 * 119.99759 * 179.97438 * 20 19 17 23 23 N 1.31416 * 120.00046 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99916 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46728 * 90.00637 * 24 22 20 26 26 H 1.48501 * 109.47118 * 210.00351 * 24 22 20 27 27 H 1.48498 * 109.47167 * 330.00753 * 24 22 20 28 28 C 1.48560 * 104.22462 * 320.51791 * 15 14 13 29 29 H 1.08998 * 110.40836 * 280.70935 * 28 15 14 30 30 C 1.53001 * 110.41245 * 158.26206 * 28 15 14 31 31 H 1.09005 * 109.46524 * 59.99944 * 1 2 3 32 32 H 1.09001 * 109.47177 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47185 * 300.00394 * 1 2 3 34 34 H 1.09004 * 109.47492 * 239.99650 * 2 1 3 35 35 H 1.09004 * 109.46992 * 120.00307 * 2 1 3 36 36 H 1.08999 * 109.47466 * 60.00218 * 5 3 2 37 37 H 1.09001 * 109.46901 * 180.02562 * 5 3 2 38 38 H 1.09005 * 109.47294 * 300.00027 * 5 3 2 39 39 H 1.08992 * 109.47503 * 59.99822 * 7 6 3 40 40 H 1.09004 * 109.46997 * 299.99970 * 7 6 3 41 41 H 0.97001 * 119.99851 * 0.02562 * 10 8 7 42 42 H 1.09002 * 110.32521 * 0.02562 * 13 11 10 43 43 H 1.08998 * 110.32511 * 237.89601 * 13 11 10 44 44 H 1.09004 * 110.40685 * 142.58460 * 14 13 11 45 45 H 1.08997 * 110.40872 * 264.90617 * 14 13 11 46 46 H 1.09001 * 109.46906 * 50.12862 * 16 15 14 47 47 H 1.08999 * 109.46462 * 170.12609 * 16 15 14 48 48 H 0.96998 * 119.99992 * 359.97438 * 19 17 16 49 49 H 0.96997 * 120.00335 * 179.97438 * 23 22 20 50 50 H 1.09000 * 109.46721 * 61.45175 * 30 28 15 51 51 H 1.08995 * 109.46973 * 181.45002 * 30 28 15 52 52 H 1.09002 * 109.46736 * 301.45515 * 30 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8417 5 6 3.5649 1.4442 -0.1257 6 8 1.6620 2.0813 1.2211 7 6 1.4560 3.4902 1.1003 8 6 1.0639 4.0572 2.4404 9 8 0.9697 3.3266 3.4039 10 7 0.8180 5.3762 2.5682 11 6 0.4363 5.9273 3.8708 12 1 -0.1875 5.2180 4.4148 13 6 1.6933 6.2765 4.6939 14 6 1.6032 7.7976 4.9423 15 7 0.1560 8.1112 4.8231 16 6 -0.0520 9.5377 4.5403 17 6 0.3074 10.3490 5.7583 18 8 0.6979 9.7935 6.7634 19 7 0.1940 11.6917 5.7311 20 6 0.5204 12.4297 6.8395 21 1 0.8680 11.9352 7.7344 22 6 0.4040 13.8140 6.8114 23 7 -0.0196 14.4158 5.7226 24 14 0.8481 14.8196 8.3217 25 1 2.2856 15.1879 8.2659 26 1 0.0220 16.0531 8.3555 27 1 0.5897 14.0171 9.5442 28 6 -0.3076 7.2705 3.6895 29 1 -0.0367 7.7307 2.7393 30 6 -1.8205 7.0561 3.7678 31 1 -0.3632 0.5139 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5139 0.8899 34 1 1.8934 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 3.8533 0.9569 -1.0570 37 1 3.9283 2.4718 -0.1252 38 1 3.9995 0.9051 0.7162 39 1 0.6620 3.6808 0.3784 40 1 2.3770 3.9643 0.7610 41 1 0.8930 5.9605 1.7975 42 1 2.5943 6.0383 4.1286 43 1 1.6875 5.7373 5.6412 44 1 1.9642 8.0417 5.9414 45 1 2.1748 8.3402 4.1893 46 1 0.5797 9.8381 3.7043 47 1 -1.0978 9.7087 4.2853 48 1 -0.1186 12.1358 4.9275 49 1 -0.1012 15.3821 5.7030 50 1 -2.3278 8.0184 3.6988 51 1 -2.1400 6.4171 2.9447 52 1 -2.0713 6.5803 4.7159 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264696733.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:48:33 Heat of formation + Delta-G solvation = -120.050630 kcal Electronic energy + Delta-G solvation = -29894.339450 eV Core-core repulsion = 25700.745494 eV Total energy + Delta-G solvation = -4193.593956 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.38497 -39.26292 -38.40075 -37.52502 -34.53888 -34.16358 -33.81911 -31.51194 -31.24556 -30.96944 -30.29490 -28.29686 -26.33173 -25.06804 -24.14267 -24.00040 -21.62496 -21.44917 -20.53383 -20.27497 -19.13325 -17.89666 -17.49316 -17.37799 -16.61488 -16.15179 -15.90428 -15.23767 -15.14604 -14.79958 -14.60353 -14.43907 -14.25281 -14.07840 -13.83906 -13.76445 -13.53210 -13.39032 -13.21685 -13.09501 -12.51744 -12.42652 -12.22308 -12.04005 -11.89977 -11.78190 -11.66501 -11.47668 -11.40546 -11.36102 -11.22733 -11.12302 -10.97985 -10.81081 -10.61354 -10.38972 -10.21619 -10.03744 -9.94072 -9.49313 -9.21762 -8.53374 -8.05282 -7.94608 -6.41617 -3.82280 2.40239 2.49408 3.17916 3.26624 3.32791 3.56957 3.90401 4.03252 4.23271 4.30971 4.39720 4.51601 4.56789 4.67031 4.69193 4.70986 4.82450 4.91935 5.00629 5.12822 5.16236 5.21005 5.24043 5.24770 5.26369 5.35823 5.45496 5.52477 5.59281 5.62427 5.68009 5.71930 5.75457 5.78679 5.89038 5.89443 5.96027 5.98473 6.15101 6.21414 6.30477 6.35357 6.46195 6.71784 7.10308 7.16395 7.28052 7.55513 8.02079 8.06496 8.62095 9.18616 9.54600 10.06675 10.76202 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.032058 B = 0.001683 C = 0.001665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.200793 B =16632.898958 C =16814.157734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C 0.083 3.917 4 H 0.061 0.939 5 C -0.177 4.177 6 O -0.354 6.354 7 C 0.044 3.956 8 C 0.513 3.487 9 O -0.514 6.514 10 N -0.723 5.723 11 C 0.148 3.852 12 H 0.102 0.898 13 C -0.133 4.133 14 C 0.038 3.962 15 N -0.476 5.476 16 C 0.036 3.964 17 C 0.445 3.555 18 O -0.576 6.576 19 N -0.565 5.565 20 C -0.298 4.298 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.903 5.903 24 Si 0.930 3.070 25 H -0.279 1.279 26 H -0.284 1.284 27 H -0.269 1.269 28 C 0.052 3.948 29 H 0.054 0.946 30 C -0.136 4.136 31 H 0.050 0.950 32 H 0.054 0.946 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.057 0.943 38 H 0.066 0.934 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.398 0.602 42 H 0.069 0.931 43 H 0.079 0.921 44 H 0.102 0.898 45 H 0.037 0.963 46 H 0.049 0.951 47 H 0.090 0.910 48 H 0.391 0.609 49 H 0.271 0.729 50 H 0.060 0.940 51 H 0.056 0.944 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.817 -21.785 -18.450 28.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C 0.025 3.975 4 H 0.079 0.921 5 C -0.235 4.235 6 O -0.272 6.272 7 C -0.036 4.036 8 C 0.298 3.702 9 O -0.388 6.388 10 N -0.377 5.377 11 C 0.044 3.956 12 H 0.120 0.880 13 C -0.172 4.172 14 C -0.090 4.090 15 N -0.201 5.201 16 C -0.096 4.096 17 C 0.230 3.770 18 O -0.459 6.459 19 N -0.202 5.202 20 C -0.427 4.427 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.544 5.544 24 Si 0.757 3.243 25 H -0.205 1.205 26 H -0.209 1.209 27 H -0.194 1.194 28 C -0.057 4.057 29 H 0.071 0.929 30 C -0.194 4.194 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.085 0.915 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.232 0.768 42 H 0.087 0.913 43 H 0.098 0.902 44 H 0.120 0.880 45 H 0.056 0.944 46 H 0.067 0.933 47 H 0.108 0.892 48 H 0.224 0.776 49 H 0.081 0.919 50 H 0.079 0.921 51 H 0.075 0.925 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.658 -22.716 -16.410 28.072 hybrid contribution 0.587 1.751 -1.327 2.274 sum 2.245 -20.965 -17.736 27.553 Atomic orbital electron populations 1.21745 0.95247 1.01784 1.02253 1.21626 0.96768 0.94562 1.02822 1.22244 0.94368 0.94259 0.86628 0.92054 1.22316 0.95990 1.02508 1.02655 1.88070 1.89378 1.17727 1.32008 1.22228 1.01439 0.84409 0.95543 1.20222 0.77538 0.82178 0.90236 1.90754 1.49540 1.58513 1.40011 1.46037 1.71165 1.08064 1.12424 1.21811 0.96080 0.94749 0.83009 0.88037 1.22754 0.97132 0.96509 1.00788 1.23171 0.88601 0.93830 1.03364 1.65121 1.14870 1.03978 1.36110 1.22068 1.02036 0.88486 0.97022 1.19665 0.85019 0.82877 0.89393 1.90516 1.50957 1.70619 1.33856 1.41853 1.58551 1.04476 1.15363 1.19701 1.41086 0.88461 0.93492 0.87915 1.25249 0.97343 0.96985 0.98371 1.69611 1.46851 1.10500 1.27478 0.85861 0.78282 0.78864 0.81310 1.20468 1.20944 1.19401 1.22913 0.96360 0.92670 0.93806 0.92857 1.21714 0.93335 1.01999 1.02309 0.93116 0.92650 0.91714 0.90682 0.90842 0.91498 0.92438 0.91496 0.90369 0.90453 0.76759 0.91261 0.90185 0.87975 0.94434 0.93317 0.89206 0.77557 0.91922 0.92121 0.92544 0.91345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.81 37.16 0.36 -0.65 16 2 C -0.12 -0.76 5.64 -26.73 -0.15 -0.92 16 3 C 0.08 0.56 2.72 -26.73 -0.07 0.49 16 4 H 0.06 0.32 7.79 -51.93 -0.40 -0.09 16 5 C -0.18 -1.04 9.53 37.16 0.35 -0.69 16 6 O -0.35 -3.54 9.06 -55.14 -0.50 -4.04 16 7 C 0.04 0.34 6.23 36.00 0.22 0.56 16 8 C 0.51 5.69 7.90 -10.99 -0.09 5.60 16 9 O -0.51 -8.21 16.20 -14.36 -0.23 -8.44 16 10 N -0.72 -6.69 5.04 -52.35 -0.26 -6.95 16 11 C 0.15 1.77 2.92 -66.42 -0.19 1.58 16 12 H 0.10 1.40 7.36 -51.93 -0.38 1.01 16 13 C -0.13 -1.77 6.77 -25.34 -0.17 -1.94 16 14 C 0.04 0.60 5.80 -2.18 -0.01 0.59 16 15 N -0.48 -7.71 4.74 -223.42 -1.06 -8.77 16 16 C 0.04 0.62 5.24 -4.98 -0.03 0.59 16 17 C 0.45 10.40 7.58 -10.99 -0.08 10.31 16 18 O -0.58 -15.46 14.42 5.54 0.08 -15.38 16 19 N -0.57 -14.20 5.29 -10.97 -0.06 -14.26 16 20 C -0.30 -8.27 9.68 -14.93 -0.14 -8.41 16 21 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.40 13.05 55.50 0.72 -23.68 16 24 Si 0.93 21.03 29.55 -169.99 -5.02 16.01 16 25 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 26 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 27 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 28 C 0.05 0.62 2.60 -65.95 -0.17 0.45 16 29 H 0.05 0.56 7.60 -51.93 -0.39 0.16 16 30 C -0.14 -1.52 9.34 37.16 0.35 -1.17 16 31 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.55 7.82 -51.93 -0.41 0.15 16 34 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 37 H 0.06 0.32 7.87 -51.93 -0.41 -0.09 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.08 0.41 8.08 -51.93 -0.42 -0.01 16 40 H 0.08 0.43 7.87 -51.93 -0.41 0.02 16 41 H 0.40 2.47 8.35 -40.82 -0.34 2.13 16 42 H 0.07 0.85 7.95 -51.93 -0.41 0.44 16 43 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 44 H 0.10 1.94 6.91 -51.93 -0.36 1.58 16 45 H 0.04 0.56 7.83 -51.93 -0.41 0.15 16 46 H 0.05 0.76 7.88 -51.93 -0.41 0.35 16 47 H 0.09 1.42 7.28 -51.93 -0.38 1.04 16 48 H 0.39 9.37 7.90 -40.82 -0.32 9.05 16 49 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 50 H 0.06 0.68 7.36 -51.93 -0.38 0.30 16 51 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 52 H 0.07 0.85 8.12 -51.93 -0.42 0.42 16 LS Contribution 420.49 15.07 6.34 6.34 Total: -1.00 -34.27 420.49 -9.07 -43.34 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: -9.15 Total: 8.96 kcal Atomic # 6 Polarization: 6.81 SS G_CDS: 0.08 Total: 6.89 kcal Atomic # 7 Polarization: -53.00 SS G_CDS: -0.66 Total: -53.66 kcal Atomic # 8 Polarization: -27.21 SS G_CDS: -0.65 Total: -27.87 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 6.34 Total: 6.34 kcal Total: -34.27 -9.07 -43.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264696733.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.714 kcal (2) G-P(sol) polarization free energy of solvation -34.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds