Wall clock time and date at job start Wed Apr 1 2020 00:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47452 * 2 1 4 4 H 1.08994 * 109.47446 * 305.00020 * 3 2 1 5 5 C 1.53000 * 109.47210 * 184.99769 * 3 2 1 6 6 O 1.42904 * 109.46896 * 64.99844 * 3 2 1 7 7 C 1.42895 * 113.99970 * 210.00146 * 6 3 2 8 8 C 1.50697 * 109.47303 * 180.02562 * 7 6 3 9 9 O 1.21285 * 119.99770 * 359.97438 * 8 7 6 10 10 N 1.34778 * 120.00413 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00319 * 179.97438 * 10 8 7 12 12 H 1.09002 * 110.36471 * 324.27749 * 11 10 8 13 13 C 1.54262 * 110.32117 * 86.45453 * 11 10 8 14 14 C 1.54385 * 105.14590 * 118.94932 * 13 11 10 15 15 N 1.48560 * 104.59445 * 23.80120 * 14 13 11 16 16 C 1.46903 * 110.99703 * 200.95695 * 15 14 13 17 17 C 1.50691 * 109.47328 * 290.13011 * 16 15 14 18 18 O 1.21298 * 120.00025 * 359.97438 * 17 16 15 19 19 N 1.34776 * 119.99939 * 180.02562 * 17 16 15 20 20 C 1.37109 * 119.99809 * 179.97438 * 19 17 16 21 21 H 1.07991 * 120.00109 * 359.97438 * 20 19 17 22 22 C 1.38948 * 119.99759 * 179.97438 * 20 19 17 23 23 N 1.31416 * 120.00046 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99916 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46728 * 90.00637 * 24 22 20 26 26 H 1.48501 * 109.47118 * 210.00351 * 24 22 20 27 27 H 1.48498 * 109.47167 * 330.00753 * 24 22 20 28 28 C 1.48560 * 104.22462 * 320.51791 * 15 14 13 29 29 H 1.08998 * 110.40836 * 280.70935 * 28 15 14 30 30 C 1.53001 * 110.41245 * 158.26206 * 28 15 14 31 31 H 1.09005 * 109.46524 * 59.99944 * 1 2 3 32 32 H 1.09001 * 109.47177 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47185 * 300.00394 * 1 2 3 34 34 H 1.09004 * 109.47492 * 239.99650 * 2 1 3 35 35 H 1.09004 * 109.46992 * 120.00307 * 2 1 3 36 36 H 1.08999 * 109.47466 * 60.00218 * 5 3 2 37 37 H 1.09001 * 109.46901 * 180.02562 * 5 3 2 38 38 H 1.09005 * 109.47294 * 300.00027 * 5 3 2 39 39 H 1.08992 * 109.47503 * 59.99822 * 7 6 3 40 40 H 1.09004 * 109.46997 * 299.99970 * 7 6 3 41 41 H 0.97001 * 119.99851 * 0.02562 * 10 8 7 42 42 H 1.09002 * 110.32521 * 0.02562 * 13 11 10 43 43 H 1.08998 * 110.32511 * 237.89601 * 13 11 10 44 44 H 1.09004 * 110.40685 * 142.58460 * 14 13 11 45 45 H 1.08997 * 110.40872 * 264.90617 * 14 13 11 46 46 H 1.09001 * 109.46906 * 50.12862 * 16 15 14 47 47 H 1.08999 * 109.46462 * 170.12609 * 16 15 14 48 48 H 0.96998 * 119.99992 * 359.97438 * 19 17 16 49 49 H 0.96997 * 120.00335 * 179.97438 * 23 22 20 50 50 H 1.09000 * 109.46721 * 61.45175 * 30 28 15 51 51 H 1.08995 * 109.46973 * 181.45002 * 30 28 15 52 52 H 1.09002 * 109.46736 * 301.45515 * 30 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8417 5 6 3.5649 1.4442 -0.1257 6 8 1.6620 2.0813 1.2211 7 6 1.4560 3.4902 1.1003 8 6 1.0639 4.0572 2.4404 9 8 0.9697 3.3266 3.4039 10 7 0.8180 5.3762 2.5682 11 6 0.4363 5.9273 3.8708 12 1 -0.1875 5.2180 4.4148 13 6 1.6933 6.2765 4.6939 14 6 1.6032 7.7976 4.9423 15 7 0.1560 8.1112 4.8231 16 6 -0.0520 9.5377 4.5403 17 6 0.3074 10.3490 5.7583 18 8 0.6979 9.7935 6.7634 19 7 0.1940 11.6917 5.7311 20 6 0.5204 12.4297 6.8395 21 1 0.8680 11.9352 7.7344 22 6 0.4040 13.8140 6.8114 23 7 -0.0196 14.4158 5.7226 24 14 0.8481 14.8196 8.3217 25 1 2.2856 15.1879 8.2659 26 1 0.0220 16.0531 8.3555 27 1 0.5897 14.0171 9.5442 28 6 -0.3076 7.2705 3.6895 29 1 -0.0367 7.7307 2.7393 30 6 -1.8205 7.0561 3.7678 31 1 -0.3632 0.5139 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5139 0.8899 34 1 1.8934 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 3.8533 0.9569 -1.0570 37 1 3.9283 2.4718 -0.1252 38 1 3.9995 0.9051 0.7162 39 1 0.6620 3.6808 0.3784 40 1 2.3770 3.9643 0.7610 41 1 0.8930 5.9605 1.7975 42 1 2.5943 6.0383 4.1286 43 1 1.6875 5.7373 5.6412 44 1 1.9642 8.0417 5.9414 45 1 2.1748 8.3402 4.1893 46 1 0.5797 9.8381 3.7043 47 1 -1.0978 9.7087 4.2853 48 1 -0.1186 12.1358 4.9275 49 1 -0.1012 15.3821 5.7030 50 1 -2.3278 8.0184 3.6988 51 1 -2.1400 6.4171 2.9447 52 1 -2.0713 6.5803 4.7159 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264696733.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:48:32 Heat of formation + Delta-G solvation = -145.517566 kcal Electronic energy + Delta-G solvation = -29895.443779 eV Core-core repulsion = 25700.745494 eV Total energy + Delta-G solvation = -4194.698285 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.36620 -40.42006 -39.48277 -38.80817 -36.02095 -35.39361 -34.70965 -33.30406 -32.44824 -32.19408 -30.78294 -29.13204 -27.85669 -26.04301 -25.86847 -24.50584 -22.71226 -21.94850 -21.54627 -21.41432 -20.77902 -19.85232 -18.30034 -18.13238 -17.61237 -17.43659 -16.91452 -16.50743 -16.36928 -16.20276 -15.86911 -15.63402 -15.28989 -15.20360 -14.97213 -14.68517 -14.44245 -14.39754 -14.14434 -13.85187 -13.70470 -13.64899 -13.46693 -13.00139 -12.94158 -12.86781 -12.76364 -12.55487 -12.45827 -12.38706 -12.37638 -12.23377 -12.13122 -12.07366 -11.90360 -11.69334 -11.47332 -11.45103 -10.85874 -10.56748 -10.33146 -10.12101 -9.99124 -9.38986 -8.45703 -5.93860 1.37919 1.41828 1.54214 1.57424 1.75370 2.07513 2.29335 2.76695 3.07055 3.21046 3.33338 3.41119 3.73604 3.77969 3.93702 4.02678 4.08155 4.15204 4.20784 4.23149 4.24733 4.33908 4.34312 4.42558 4.43309 4.45544 4.54756 4.68777 4.69890 4.73956 4.82351 4.83906 4.88798 5.01469 5.03437 5.07300 5.12174 5.13845 5.23233 5.31130 5.36381 5.39764 5.42455 5.45005 5.83985 5.94807 6.09925 6.19880 6.56331 6.62568 7.14849 7.24262 7.58382 8.15094 8.71647 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.032058 B = 0.001683 C = 0.001665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.200793 B =16632.898958 C =16814.157734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C 0.079 3.921 4 H 0.084 0.916 5 C -0.175 4.175 6 O -0.389 6.389 7 C 0.046 3.954 8 C 0.511 3.489 9 O -0.572 6.572 10 N -0.704 5.704 11 C 0.157 3.843 12 H 0.081 0.919 13 C -0.125 4.125 14 C 0.042 3.958 15 N -0.504 5.504 16 C 0.050 3.950 17 C 0.441 3.559 18 O -0.617 6.617 19 N -0.574 5.574 20 C -0.332 4.332 21 H 0.076 0.924 22 C -0.011 4.011 23 N -0.919 5.919 24 Si 0.991 3.009 25 H -0.271 1.271 26 H -0.270 1.270 27 H -0.276 1.276 28 C 0.060 3.940 29 H 0.085 0.915 30 C -0.134 4.134 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.039 0.961 34 H 0.097 0.903 35 H 0.054 0.946 36 H 0.085 0.915 37 H 0.061 0.939 38 H 0.048 0.952 39 H 0.111 0.889 40 H 0.105 0.895 41 H 0.418 0.582 42 H 0.082 0.918 43 H 0.060 0.940 44 H 0.059 0.941 45 H 0.051 0.949 46 H 0.076 0.924 47 H 0.112 0.888 48 H 0.396 0.604 49 H 0.277 0.723 50 H 0.062 0.938 51 H 0.081 0.919 52 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.688 -21.478 -21.790 30.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C 0.022 3.978 4 H 0.102 0.898 5 C -0.233 4.233 6 O -0.309 6.309 7 C -0.033 4.033 8 C 0.298 3.702 9 O -0.450 6.450 10 N -0.359 5.359 11 C 0.051 3.949 12 H 0.099 0.901 13 C -0.164 4.164 14 C -0.086 4.086 15 N -0.229 5.229 16 C -0.082 4.082 17 C 0.228 3.772 18 O -0.503 6.503 19 N -0.212 5.212 20 C -0.462 4.462 21 H 0.094 0.906 22 C -0.211 4.211 23 N -0.560 5.560 24 Si 0.815 3.185 25 H -0.197 1.197 26 H -0.195 1.195 27 H -0.201 1.201 28 C -0.049 4.049 29 H 0.103 0.897 30 C -0.192 4.192 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.058 0.942 34 H 0.115 0.885 35 H 0.073 0.927 36 H 0.103 0.897 37 H 0.080 0.920 38 H 0.067 0.933 39 H 0.129 0.871 40 H 0.123 0.877 41 H 0.256 0.744 42 H 0.101 0.899 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.069 0.931 46 H 0.094 0.906 47 H 0.130 0.870 48 H 0.230 0.770 49 H 0.087 0.913 50 H 0.081 0.919 51 H 0.100 0.900 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.523 -22.384 -19.820 29.936 hybrid contribution 0.626 1.588 -0.292 1.732 sum 2.149 -20.796 -20.112 29.010 Atomic orbital electron populations 1.21718 0.95528 1.01915 1.01638 1.21675 0.96519 0.94784 1.02958 1.22431 0.94916 0.94247 0.86252 0.89759 1.22311 0.95393 1.02746 1.02835 1.88042 1.89793 1.18976 1.34063 1.22355 1.03731 0.83627 0.93572 1.20951 0.76210 0.82065 0.91003 1.90738 1.52147 1.59930 1.42202 1.45805 1.70150 1.07977 1.11997 1.21500 0.94891 0.94462 0.84022 0.90122 1.22650 0.98610 0.94621 1.00513 1.23005 0.88797 0.95431 1.01339 1.65028 1.15111 1.03740 1.38989 1.21917 1.03706 0.88272 0.94260 1.20780 0.83040 0.82575 0.90757 1.90497 1.52291 1.71339 1.36186 1.41907 1.59161 1.05206 1.14929 1.19631 1.43165 0.89479 0.93918 0.90560 1.25978 0.96698 0.97313 1.01119 1.69662 1.46675 1.11064 1.28630 0.84964 0.78442 0.77481 0.77661 1.19666 1.19487 1.20052 1.22952 0.96725 0.91614 0.93576 0.89680 1.21725 0.92612 1.02470 1.02376 0.91686 0.92238 0.94221 0.88492 0.92728 0.89658 0.91993 0.93282 0.87131 0.87743 0.74364 0.89909 0.92158 0.92245 0.93125 0.90606 0.86994 0.76965 0.91337 0.91861 0.90013 0.93265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.81 71.98 0.71 -1.12 16 2 C -0.12 -1.39 5.64 30.59 0.17 -1.22 16 3 C 0.08 0.90 2.72 30.59 0.08 0.98 16 4 H 0.08 0.56 7.79 -2.39 -0.02 0.54 16 5 C -0.18 -1.71 9.53 71.98 0.69 -1.03 16 6 O -0.39 -7.30 9.06 -129.94 -1.18 -8.47 16 7 C 0.05 0.59 6.23 71.24 0.44 1.03 16 8 C 0.51 10.53 7.90 87.66 0.69 11.22 16 9 O -0.57 -18.52 16.20 15.99 0.26 -18.26 16 10 N -0.70 -11.22 5.04 -437.91 -2.21 -13.43 16 11 C 0.16 3.58 2.92 45.97 0.13 3.71 16 12 H 0.08 2.24 7.36 -2.39 -0.02 2.22 16 13 C -0.12 -3.33 6.77 31.49 0.21 -3.12 16 14 C 0.04 1.34 5.80 86.45 0.50 1.84 16 15 N -0.50 -15.90 4.74 -860.78 -4.08 -19.98 16 16 C 0.05 1.65 5.24 85.55 0.45 2.10 16 17 C 0.44 20.87 7.58 87.65 0.66 21.54 16 18 O -0.62 -34.47 14.42 -3.09 -0.04 -34.52 16 19 N -0.57 -29.22 5.29 -306.99 -1.62 -30.85 16 20 C -0.33 -18.90 9.68 84.04 0.81 -18.09 16 21 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 22 C -0.01 -0.60 5.50 84.93 0.47 -0.14 16 23 N -0.92 -49.14 13.05 21.66 0.28 -48.86 16 24 Si 0.99 43.07 29.55 68.60 2.03 45.09 16 25 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 26 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 27 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 28 C 0.06 1.29 2.60 45.14 0.12 1.41 16 29 H 0.09 1.37 7.60 -2.39 -0.02 1.35 16 30 C -0.13 -2.70 9.34 71.98 0.67 -2.03 16 31 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 32 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.04 0.68 7.82 -2.39 -0.02 0.66 16 34 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 36 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 37 H 0.06 0.54 7.87 -2.39 -0.02 0.52 16 38 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 39 H 0.11 0.68 8.08 -2.39 -0.02 0.66 16 40 H 0.10 0.76 7.87 -2.38 -0.02 0.74 16 41 H 0.42 3.41 8.35 -92.71 -0.77 2.63 16 42 H 0.08 1.96 7.95 -2.39 -0.02 1.94 16 43 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.06 2.39 6.91 -2.38 -0.02 2.37 16 45 H 0.05 1.45 7.83 -2.39 -0.02 1.43 16 46 H 0.08 2.13 7.88 -2.39 -0.02 2.11 16 47 H 0.11 3.24 7.28 -2.39 -0.02 3.23 16 48 H 0.40 18.97 7.90 -92.71 -0.73 18.23 16 49 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 50 H 0.06 1.25 7.36 -2.39 -0.02 1.23 16 51 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 52 H 0.05 1.18 8.12 -2.39 -0.02 1.16 16 Total: -1.00 -78.84 420.49 -0.34 -79.18 By element: Atomic # 1 Polarization: 33.58 SS G_CDS: -0.59 Total: 32.99 kcal Atomic # 6 Polarization: 10.29 SS G_CDS: 6.82 Total: 17.10 kcal Atomic # 7 Polarization: -105.49 SS G_CDS: -7.63 Total: -113.12 kcal Atomic # 8 Polarization: -60.29 SS G_CDS: -0.96 Total: -61.25 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.09 kcal Total: -78.84 -0.34 -79.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264696733.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.338 kcal (2) G-P(sol) polarization free energy of solvation -78.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds