Wall clock time and date at job start Wed Apr 1 2020 00:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47194 * 2 1 4 4 H 1.09003 * 109.47151 * 305.41735 * 3 2 1 5 5 O 1.42897 * 109.47298 * 65.41822 * 3 2 1 6 6 C 1.42896 * 113.99924 * 213.49965 * 5 3 2 7 7 C 1.50701 * 109.47057 * 185.42086 * 3 2 1 8 8 O 1.21278 * 119.99700 * 244.99697 * 7 3 2 9 9 N 1.34776 * 120.00026 * 64.99769 * 7 3 2 10 10 C 1.46500 * 119.99907 * 179.97438 * 9 7 3 11 11 C 1.53006 * 109.47002 * 174.96250 * 10 9 7 12 12 H 1.08999 * 109.46009 * 175.60214 * 11 10 9 13 13 C 1.53035 * 109.46277 * 295.58488 * 11 10 9 14 14 C 1.53120 * 109.27723 * 179.19568 * 13 11 10 15 15 C 1.53125 * 109.16034 * 302.34742 * 14 13 11 16 16 C 1.53030 * 109.27835 * 57.65068 * 15 14 13 17 17 N 1.46841 * 109.45980 * 55.62789 * 11 10 9 18 18 C 1.46907 * 111.00127 * 54.14274 * 17 11 10 19 19 C 1.50696 * 109.46832 * 64.38142 * 18 17 11 20 20 O 1.21287 * 120.00582 * 358.24049 * 19 18 17 21 21 N 1.34780 * 119.99788 * 178.24664 * 19 18 17 22 22 C 1.37097 * 120.00160 * 179.97438 * 21 19 18 23 23 H 1.08006 * 119.99907 * 359.97438 * 22 21 19 24 24 C 1.38945 * 120.00203 * 179.97438 * 22 21 19 25 25 N 1.31412 * 120.00154 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 120.00057 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.47254 * 59.99995 * 26 24 22 28 28 H 1.48503 * 109.47261 * 179.97438 * 26 24 22 29 29 H 1.48498 * 109.47138 * 299.99850 * 26 24 22 30 30 H 1.08999 * 109.47706 * 304.70331 * 1 2 3 31 31 H 1.09000 * 109.46909 * 64.70170 * 1 2 3 32 32 H 1.09001 * 109.47331 * 184.69825 * 1 2 3 33 33 H 1.08999 * 109.47039 * 239.99252 * 2 1 3 34 34 H 1.09002 * 109.46477 * 119.99685 * 2 1 3 35 35 H 1.09002 * 109.47209 * 64.94909 * 6 5 3 36 36 H 1.09004 * 109.47422 * 184.94451 * 6 5 3 37 37 H 1.08998 * 109.47766 * 304.93929 * 6 5 3 38 38 H 0.97001 * 120.00151 * 0.02562 * 9 7 3 39 39 H 1.08997 * 109.47222 * 294.97022 * 10 9 7 40 40 H 1.09005 * 109.47114 * 54.96451 * 10 9 7 41 41 H 1.09004 * 109.50364 * 299.13631 * 13 11 10 42 42 H 1.08995 * 109.50188 * 59.21283 * 13 11 10 43 43 H 1.09005 * 109.52233 * 62.25012 * 14 13 11 44 44 H 1.08991 * 109.52624 * 182.44139 * 14 13 11 45 45 H 1.08993 * 109.50491 * 177.59558 * 15 14 13 46 46 H 1.08999 * 109.50034 * 297.71365 * 15 14 13 47 47 H 1.09008 * 109.46338 * 60.84053 * 16 15 14 48 48 H 1.09004 * 109.46330 * 180.81813 * 16 15 14 49 49 H 1.09004 * 109.46780 * 184.37731 * 18 17 11 50 50 H 1.08999 * 109.46853 * 304.38024 * 18 17 11 51 51 H 0.97004 * 120.00223 * 359.97438 * 21 19 18 52 52 H 0.97000 * 120.00584 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5996 1.9836 -0.8375 5 8 1.6704 2.0784 1.2251 6 6 1.3868 3.4727 1.0937 7 6 3.5411 1.4445 -0.1342 8 8 4.2304 1.8591 0.7734 9 7 4.1173 0.9857 -1.2629 10 6 5.5765 0.9883 -1.3935 11 6 5.9723 0.3064 -2.7048 12 1 7.0516 0.3773 -2.8397 13 6 5.5598 -1.1666 -2.6584 14 6 5.9397 -1.8398 -3.9801 15 6 5.2596 -1.0993 -5.1350 16 6 5.6807 0.3717 -5.1096 17 7 5.2946 0.9705 -3.8255 18 6 5.5580 2.4157 -3.8183 19 6 7.0275 2.6595 -4.0469 20 8 7.7862 1.7212 -4.1688 21 7 7.4986 3.9204 -4.1157 22 6 8.8355 4.1423 -4.3231 23 1 9.5113 3.3066 -4.4309 24 6 9.3212 5.4421 -4.3946 25 7 8.4990 6.4589 -4.2639 26 14 11.1426 5.7444 -4.6779 27 1 11.5499 5.1377 -5.9706 28 1 11.4021 7.2061 -4.7142 29 1 11.9239 5.1297 -3.5747 30 1 -0.3634 0.5850 0.8448 31 1 -0.3633 0.4392 -0.9291 32 1 -0.3634 -1.0242 0.0842 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 0.5052 3.6067 0.4669 36 1 1.2004 3.9001 2.0790 37 1 2.2385 3.9752 0.6351 38 1 3.5660 0.6545 -1.9889 39 1 5.9394 2.0160 -1.3944 40 1 6.0173 0.4480 -0.5557 41 1 6.0749 -1.6630 -1.8359 42 1 4.4825 -1.2383 -2.5092 43 1 7.0213 -1.8026 -4.1102 44 1 5.6089 -2.8783 -3.9683 45 1 5.5602 -1.5475 -6.0819 46 1 4.1775 -1.1699 -5.0255 47 1 6.7615 0.4423 -5.2330 48 1 5.1868 0.9050 -5.9219 49 1 4.9827 2.8938 -4.6112 50 1 5.2659 2.8334 -2.8549 51 1 6.8918 4.6709 -4.0185 52 1 8.8380 7.3664 -4.3134 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265640335.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:59:21 Heat of formation + Delta-G solvation = -123.592593 kcal Electronic energy + Delta-G solvation = -31885.916269 eV Core-core repulsion = 27692.168722 eV Total energy + Delta-G solvation = -4193.747547 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.33549 -39.52389 -37.69183 -37.22665 -34.69228 -34.13615 -33.74507 -32.91396 -31.33158 -30.98921 -28.26651 -27.45924 -26.58918 -25.39739 -24.55394 -22.75118 -22.35332 -21.28985 -20.49608 -19.60036 -19.02681 -17.91135 -17.56182 -17.08659 -16.04877 -15.97807 -15.45365 -15.39190 -15.24190 -14.63956 -14.61185 -14.31084 -14.18962 -14.06119 -13.91451 -13.85730 -13.51635 -13.39664 -13.05799 -12.71961 -12.64056 -12.26895 -12.10953 -11.82292 -11.73003 -11.69636 -11.55472 -11.37640 -11.34515 -11.17110 -11.00328 -10.66674 -10.58922 -10.54794 -10.47980 -10.29623 -10.18673 -10.05568 -9.51175 -9.29200 -9.24153 -8.86023 -8.04290 -7.49598 -6.49236 -3.90812 2.68237 3.11543 3.14487 3.21193 3.25043 3.67868 3.77842 4.11225 4.20349 4.59324 4.65350 4.80243 4.86556 4.91002 4.99102 5.04796 5.09693 5.14028 5.17556 5.27893 5.30292 5.38837 5.41686 5.49889 5.58382 5.66137 5.68178 5.70197 5.80316 5.85624 5.86876 5.93374 5.98158 6.00498 6.05999 6.13442 6.14908 6.19648 6.30336 6.36907 6.45284 6.62176 6.74649 6.86198 7.29856 7.38350 7.47118 7.67276 7.96267 8.35018 8.50699 9.08548 9.44411 9.94283 10.67124 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.010624 B = 0.003265 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2634.873133 B = 8574.330612 C =10457.655837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 C 0.074 3.926 4 H 0.086 0.914 5 O -0.358 6.358 6 C 0.030 3.970 7 C 0.484 3.516 8 O -0.530 6.530 9 N -0.712 5.712 10 C 0.125 3.875 11 C 0.057 3.943 12 H 0.097 0.903 13 C -0.105 4.105 14 C -0.119 4.119 15 C -0.111 4.111 16 C 0.036 3.964 17 N -0.508 5.508 18 C 0.035 3.965 19 C 0.405 3.595 20 O -0.595 6.595 21 N -0.554 5.554 22 C -0.304 4.304 23 H 0.102 0.898 24 C 0.025 3.975 25 N -0.897 5.897 26 Si 0.930 3.070 27 H -0.273 1.273 28 H -0.283 1.283 29 H -0.273 1.273 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.042 0.958 36 H 0.088 0.912 37 H 0.046 0.954 38 H 0.406 0.594 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.056 0.944 45 H 0.060 0.940 46 H 0.061 0.939 47 H 0.080 0.920 48 H 0.063 0.937 49 H 0.087 0.913 50 H 0.090 0.910 51 H 0.392 0.608 52 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.450 -11.583 3.346 20.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.154 4.154 3 C 0.013 3.987 4 H 0.104 0.896 5 O -0.275 6.275 6 C -0.067 4.067 7 C 0.269 3.731 8 O -0.406 6.406 9 N -0.366 5.366 10 C 0.001 3.999 11 C -0.052 4.052 12 H 0.114 0.886 13 C -0.143 4.143 14 C -0.157 4.157 15 C -0.149 4.149 16 C -0.091 4.091 17 N -0.232 5.232 18 C -0.097 4.097 19 C 0.191 3.809 20 O -0.482 6.482 21 N -0.188 5.188 22 C -0.433 4.433 23 H 0.120 0.880 24 C -0.177 4.177 25 N -0.538 5.538 26 Si 0.757 3.243 27 H -0.199 1.199 28 H -0.209 1.209 29 H -0.198 1.198 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.099 0.901 34 H 0.095 0.905 35 H 0.060 0.940 36 H 0.106 0.894 37 H 0.065 0.935 38 H 0.242 0.758 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.075 0.925 45 H 0.078 0.922 46 H 0.079 0.921 47 H 0.098 0.902 48 H 0.081 0.919 49 H 0.106 0.894 50 H 0.108 0.892 51 H 0.226 0.774 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.925 -11.837 4.163 20.274 hybrid contribution 1.243 1.098 -0.838 1.858 sum -14.682 -10.739 3.325 18.491 Atomic orbital electron populations 1.21732 0.94559 1.02130 1.02281 1.21594 0.97151 0.93119 1.03565 1.22097 0.91214 0.96299 0.89137 0.89605 1.87965 1.87635 1.22287 1.29602 1.22856 0.99220 0.81788 1.02836 1.21329 0.91104 0.78150 0.82565 1.90720 1.64594 1.45829 1.39499 1.45991 1.08136 1.64534 1.17978 1.21490 0.79885 1.01367 0.97117 1.22144 1.00702 0.93111 0.89211 0.88583 1.21561 1.01058 0.94306 0.97388 1.21544 1.00908 0.98290 0.94920 1.21538 1.00193 0.95314 0.97858 1.22341 1.02609 0.93767 0.90423 1.62425 1.55990 1.01486 1.03276 1.22124 0.94229 0.90043 1.03256 1.21016 0.90564 0.83997 0.85301 1.90391 1.59004 1.41684 1.57137 1.42052 1.09399 1.06156 1.61229 1.19656 0.84086 0.93180 1.46427 0.87989 1.25290 1.00325 0.95063 0.97038 1.69597 1.35598 0.99211 1.49349 0.85924 0.82061 0.77144 0.79153 1.19883 1.20877 1.19830 0.91827 0.92674 0.92280 0.90060 0.90488 0.93985 0.89373 0.93549 0.75797 0.91410 0.91178 0.91921 0.91924 0.91872 0.92498 0.92151 0.92060 0.90165 0.91890 0.89441 0.89202 0.77428 0.91656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.86 37.16 0.37 -0.67 16 2 C -0.12 -0.98 5.61 -26.73 -0.15 -1.13 16 3 C 0.07 0.79 2.52 -27.88 -0.07 0.72 16 4 H 0.09 0.74 7.78 -51.93 -0.40 0.34 16 5 O -0.36 -4.45 9.36 -55.09 -0.52 -4.97 16 6 C 0.03 0.30 10.80 101.05 1.09 1.39 16 7 C 0.48 6.74 7.17 -10.98 -0.08 6.66 16 8 O -0.53 -9.91 16.50 -14.30 -0.24 -10.14 16 9 N -0.71 -8.76 4.94 -60.29 -0.30 -9.06 16 10 C 0.13 1.85 4.59 -4.04 -0.02 1.84 16 11 C 0.06 0.83 1.71 -67.72 -0.12 0.72 16 12 H 0.10 1.79 5.80 -51.93 -0.30 1.49 16 13 C -0.11 -1.24 5.25 -26.65 -0.14 -1.38 16 14 C -0.12 -1.39 6.00 -26.60 -0.16 -1.55 16 15 C -0.11 -1.32 6.09 -26.65 -0.16 -1.48 16 16 C 0.04 0.54 5.00 -3.84 -0.02 0.52 16 17 N -0.51 -7.33 4.10 -228.12 -0.93 -8.27 16 18 C 0.04 0.58 5.44 -4.97 -0.03 0.56 16 19 C 0.41 8.89 7.20 -10.99 -0.08 8.81 16 20 O -0.59 -14.44 11.19 5.55 0.06 -14.38 16 21 N -0.55 -13.57 5.29 -10.96 -0.06 -13.62 16 22 C -0.30 -8.26 9.68 -14.94 -0.14 -8.40 16 23 H 0.10 2.90 7.16 -52.48 -0.38 2.53 16 24 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 25 N -0.90 -24.13 13.05 55.50 0.72 -23.41 16 26 Si 0.93 20.85 29.55 -169.99 -5.02 15.83 16 27 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 28 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 29 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 30 H 0.06 0.49 7.72 -51.93 -0.40 0.09 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.08 0.56 7.76 -51.93 -0.40 0.16 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.41 4.19 7.10 -40.82 -0.29 3.90 16 39 H 0.07 1.19 6.50 -51.93 -0.34 0.85 16 40 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.06 0.66 7.24 -51.93 -0.38 0.28 16 43 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 46 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.08 1.51 5.56 -51.92 -0.29 1.22 16 48 H 0.06 0.91 8.12 -51.93 -0.42 0.49 16 49 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 50 H 0.09 1.46 6.03 -51.93 -0.31 1.14 16 51 H 0.39 9.36 7.90 -40.82 -0.32 9.04 16 52 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 406.52 15.07 6.13 6.13 Total: -1.00 -31.53 406.52 -8.82 -40.35 By element: Atomic # 1 Polarization: 23.24 SS G_CDS: -8.86 Total: 14.38 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: 0.20 Total: 7.16 kcal Atomic # 7 Polarization: -53.79 SS G_CDS: -0.57 Total: -54.36 kcal Atomic # 8 Polarization: -28.80 SS G_CDS: -0.69 Total: -29.49 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -31.53 -8.82 -40.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265640335.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.246 kcal (2) G-P(sol) polarization free energy of solvation -31.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds