Wall clock time and date at job start Wed Apr 1 2020 00:59:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47194 * 2 1 4 4 H 1.09003 * 109.47151 * 305.41735 * 3 2 1 5 5 O 1.42897 * 109.47298 * 65.41822 * 3 2 1 6 6 C 1.42896 * 113.99924 * 213.49965 * 5 3 2 7 7 C 1.50701 * 109.47057 * 185.42086 * 3 2 1 8 8 O 1.21278 * 119.99700 * 244.99697 * 7 3 2 9 9 N 1.34776 * 120.00026 * 64.99769 * 7 3 2 10 10 C 1.46500 * 119.99907 * 179.97438 * 9 7 3 11 11 C 1.53006 * 109.47002 * 174.96250 * 10 9 7 12 12 H 1.08999 * 109.46009 * 175.60214 * 11 10 9 13 13 C 1.53035 * 109.46277 * 295.58488 * 11 10 9 14 14 C 1.53120 * 109.27723 * 179.19568 * 13 11 10 15 15 C 1.53125 * 109.16034 * 302.34742 * 14 13 11 16 16 C 1.53030 * 109.27835 * 57.65068 * 15 14 13 17 17 N 1.46841 * 109.45980 * 55.62789 * 11 10 9 18 18 C 1.46907 * 111.00127 * 54.14274 * 17 11 10 19 19 C 1.50696 * 109.46832 * 64.38142 * 18 17 11 20 20 O 1.21287 * 120.00582 * 358.24049 * 19 18 17 21 21 N 1.34780 * 119.99788 * 178.24664 * 19 18 17 22 22 C 1.37097 * 120.00160 * 179.97438 * 21 19 18 23 23 H 1.08006 * 119.99907 * 359.97438 * 22 21 19 24 24 C 1.38945 * 120.00203 * 179.97438 * 22 21 19 25 25 N 1.31412 * 120.00154 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 120.00057 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.47254 * 59.99995 * 26 24 22 28 28 H 1.48503 * 109.47261 * 179.97438 * 26 24 22 29 29 H 1.48498 * 109.47138 * 299.99850 * 26 24 22 30 30 H 1.08999 * 109.47706 * 304.70331 * 1 2 3 31 31 H 1.09000 * 109.46909 * 64.70170 * 1 2 3 32 32 H 1.09001 * 109.47331 * 184.69825 * 1 2 3 33 33 H 1.08999 * 109.47039 * 239.99252 * 2 1 3 34 34 H 1.09002 * 109.46477 * 119.99685 * 2 1 3 35 35 H 1.09002 * 109.47209 * 64.94909 * 6 5 3 36 36 H 1.09004 * 109.47422 * 184.94451 * 6 5 3 37 37 H 1.08998 * 109.47766 * 304.93929 * 6 5 3 38 38 H 0.97001 * 120.00151 * 0.02562 * 9 7 3 39 39 H 1.08997 * 109.47222 * 294.97022 * 10 9 7 40 40 H 1.09005 * 109.47114 * 54.96451 * 10 9 7 41 41 H 1.09004 * 109.50364 * 299.13631 * 13 11 10 42 42 H 1.08995 * 109.50188 * 59.21283 * 13 11 10 43 43 H 1.09005 * 109.52233 * 62.25012 * 14 13 11 44 44 H 1.08991 * 109.52624 * 182.44139 * 14 13 11 45 45 H 1.08993 * 109.50491 * 177.59558 * 15 14 13 46 46 H 1.08999 * 109.50034 * 297.71365 * 15 14 13 47 47 H 1.09008 * 109.46338 * 60.84053 * 16 15 14 48 48 H 1.09004 * 109.46330 * 180.81813 * 16 15 14 49 49 H 1.09004 * 109.46780 * 184.37731 * 18 17 11 50 50 H 1.08999 * 109.46853 * 304.38024 * 18 17 11 51 51 H 0.97004 * 120.00223 * 359.97438 * 21 19 18 52 52 H 0.97000 * 120.00584 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5996 1.9836 -0.8375 5 8 1.6704 2.0784 1.2251 6 6 1.3868 3.4727 1.0937 7 6 3.5411 1.4445 -0.1342 8 8 4.2304 1.8591 0.7734 9 7 4.1173 0.9857 -1.2629 10 6 5.5765 0.9883 -1.3935 11 6 5.9723 0.3064 -2.7048 12 1 7.0516 0.3773 -2.8397 13 6 5.5598 -1.1666 -2.6584 14 6 5.9397 -1.8398 -3.9801 15 6 5.2596 -1.0993 -5.1350 16 6 5.6807 0.3717 -5.1096 17 7 5.2946 0.9705 -3.8255 18 6 5.5580 2.4157 -3.8183 19 6 7.0275 2.6595 -4.0469 20 8 7.7862 1.7212 -4.1688 21 7 7.4986 3.9204 -4.1157 22 6 8.8355 4.1423 -4.3231 23 1 9.5113 3.3066 -4.4309 24 6 9.3212 5.4421 -4.3946 25 7 8.4990 6.4589 -4.2639 26 14 11.1426 5.7444 -4.6779 27 1 11.5499 5.1377 -5.9706 28 1 11.4021 7.2061 -4.7142 29 1 11.9239 5.1297 -3.5747 30 1 -0.3634 0.5850 0.8448 31 1 -0.3633 0.4392 -0.9291 32 1 -0.3634 -1.0242 0.0842 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 0.5052 3.6067 0.4669 36 1 1.2004 3.9001 2.0790 37 1 2.2385 3.9752 0.6351 38 1 3.5660 0.6545 -1.9889 39 1 5.9394 2.0160 -1.3944 40 1 6.0173 0.4480 -0.5557 41 1 6.0749 -1.6630 -1.8359 42 1 4.4825 -1.2383 -2.5092 43 1 7.0213 -1.8026 -4.1102 44 1 5.6089 -2.8783 -3.9683 45 1 5.5602 -1.5475 -6.0819 46 1 4.1775 -1.1699 -5.0255 47 1 6.7615 0.4423 -5.2330 48 1 5.1868 0.9050 -5.9219 49 1 4.9827 2.8938 -4.6112 50 1 5.2659 2.8334 -2.8549 51 1 6.8918 4.6709 -4.0185 52 1 8.8380 7.3664 -4.3134 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265640335.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:59:20 Heat of formation + Delta-G solvation = -146.388538 kcal Electronic energy + Delta-G solvation = -31886.904775 eV Core-core repulsion = 27692.168722 eV Total energy + Delta-G solvation = -4194.736053 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.58596 -40.79235 -39.12052 -38.36088 -36.06897 -35.80996 -34.52435 -34.18865 -33.30157 -32.09089 -29.18682 -28.82480 -27.59116 -26.59579 -26.11620 -23.98125 -23.12183 -22.45232 -21.55421 -21.13841 -20.48052 -19.74750 -18.61882 -18.01491 -17.72913 -17.17172 -16.73211 -16.56041 -16.40800 -16.28909 -15.72152 -15.62855 -15.56723 -15.27757 -15.02365 -14.97155 -14.77923 -14.36944 -14.29273 -14.01567 -13.51909 -13.46836 -13.33854 -13.14073 -13.02707 -12.90193 -12.81905 -12.59099 -12.48896 -12.44416 -12.17802 -12.01993 -11.98919 -11.67305 -11.55586 -11.55209 -11.36844 -11.26096 -11.15839 -10.96337 -10.29421 -10.06000 -10.02238 -9.04558 -8.49628 -5.99690 1.33961 1.36752 1.47312 1.59230 1.96815 2.10464 2.25196 2.83832 2.94244 3.16220 3.23174 3.69823 3.75706 3.85828 3.94332 3.99710 4.04238 4.22701 4.32967 4.36414 4.40699 4.46748 4.47273 4.53051 4.53954 4.58034 4.63493 4.69088 4.78117 4.83676 4.86326 4.92123 4.95583 5.06064 5.15321 5.16051 5.20056 5.22876 5.31890 5.32102 5.36220 5.43421 5.48817 5.60257 5.88096 6.03568 6.04539 6.11207 6.54219 6.64840 7.07733 7.28990 7.51207 8.05474 8.65586 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.010624 B = 0.003265 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2634.873133 B = 8574.330612 C =10457.655837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.113 4.113 3 C 0.077 3.923 4 H 0.114 0.886 5 O -0.380 6.380 6 C 0.025 3.975 7 C 0.481 3.519 8 O -0.585 6.585 9 N -0.693 5.693 10 C 0.135 3.865 11 C 0.063 3.937 12 H 0.051 0.949 13 C -0.099 4.099 14 C -0.118 4.118 15 C -0.103 4.103 16 C 0.035 3.965 17 N -0.483 5.483 18 C 0.045 3.955 19 C 0.408 3.592 20 O -0.618 6.618 21 N -0.571 5.571 22 C -0.333 4.333 23 H 0.078 0.922 24 C -0.012 4.012 25 N -0.919 5.919 26 Si 0.990 3.010 27 H -0.270 1.270 28 H -0.270 1.270 29 H -0.274 1.274 30 H 0.051 0.949 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.102 0.898 34 H 0.061 0.939 35 H 0.070 0.930 36 H 0.095 0.905 37 H 0.028 0.972 38 H 0.420 0.580 39 H 0.035 0.965 40 H 0.063 0.937 41 H 0.066 0.934 42 H 0.089 0.911 43 H 0.036 0.964 44 H 0.086 0.914 45 H 0.070 0.930 46 H 0.087 0.913 47 H 0.036 0.964 48 H 0.071 0.929 49 H 0.111 0.889 50 H 0.097 0.903 51 H 0.394 0.606 52 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.129 -12.982 2.487 23.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.151 4.151 3 C 0.016 3.984 4 H 0.132 0.868 5 O -0.298 6.298 6 C -0.071 4.071 7 C 0.268 3.732 8 O -0.465 6.465 9 N -0.348 5.348 10 C 0.010 3.990 11 C -0.046 4.046 12 H 0.069 0.931 13 C -0.137 4.137 14 C -0.156 4.156 15 C -0.141 4.141 16 C -0.093 4.093 17 N -0.206 5.206 18 C -0.086 4.086 19 C 0.196 3.804 20 O -0.506 6.506 21 N -0.207 5.207 22 C -0.463 4.463 23 H 0.096 0.904 24 C -0.212 4.212 25 N -0.560 5.560 26 Si 0.814 3.186 27 H -0.195 1.195 28 H -0.195 1.195 29 H -0.200 1.200 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.120 0.880 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.114 0.886 37 H 0.046 0.954 38 H 0.259 0.741 39 H 0.053 0.947 40 H 0.081 0.919 41 H 0.085 0.915 42 H 0.107 0.893 43 H 0.055 0.945 44 H 0.104 0.896 45 H 0.089 0.911 46 H 0.105 0.895 47 H 0.054 0.946 48 H 0.089 0.911 49 H 0.129 0.871 50 H 0.115 0.885 51 H 0.227 0.773 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -18.644 -13.266 3.274 23.115 hybrid contribution 2.061 1.456 -0.557 2.584 sum -16.583 -11.810 2.716 20.539 Atomic orbital electron populations 1.21707 0.93123 1.02848 1.02595 1.21644 0.98287 0.91282 1.03845 1.22295 0.88399 0.98135 0.89586 0.86848 1.87946 1.87535 1.23365 1.30934 1.22992 0.99549 0.80698 1.03859 1.22109 0.92615 0.76709 0.81753 1.90698 1.66118 1.48259 1.41404 1.45789 1.06923 1.63900 1.18173 1.21193 0.81505 0.99302 0.97019 1.22016 0.98138 0.95449 0.88966 0.93074 1.21554 1.02631 0.91576 0.97918 1.21551 0.99435 0.99959 0.94610 1.21513 1.01609 0.92511 0.98443 1.22354 0.99943 0.96524 0.90487 1.62547 1.54634 1.00097 1.03345 1.22166 0.90256 0.91864 1.04358 1.22103 0.92773 0.82818 0.82749 1.90411 1.60623 1.42318 1.57202 1.42144 1.08679 1.07073 1.62822 1.19603 0.85288 0.93082 1.48325 0.90353 1.26028 1.04270 0.94476 0.96457 1.69662 1.37062 0.99476 1.49773 0.85034 0.77196 0.77533 0.78874 1.19535 1.19481 1.19958 0.92949 0.91174 0.91141 0.87957 0.92045 0.91168 0.88643 0.95357 0.74080 0.94654 0.91881 0.91492 0.89278 0.94463 0.89580 0.91148 0.89477 0.94610 0.91092 0.87108 0.88491 0.77274 0.91287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.86 71.98 0.71 -0.83 16 2 C -0.11 -1.57 5.61 30.59 0.17 -1.40 16 3 C 0.08 1.49 2.52 29.85 0.08 1.56 16 4 H 0.11 1.57 7.78 -2.39 -0.02 1.55 16 5 O -0.38 -9.03 9.36 -129.99 -1.22 -10.25 16 6 C 0.03 0.47 10.80 113.37 1.22 1.70 16 7 C 0.48 13.02 7.17 87.66 0.63 13.65 16 8 O -0.59 -22.36 16.50 15.97 0.26 -22.10 16 9 N -0.69 -16.03 4.94 -463.05 -2.29 -18.32 16 10 C 0.13 4.04 4.59 86.38 0.40 4.43 16 11 C 0.06 1.84 1.71 44.94 0.08 1.92 16 12 H 0.05 2.01 5.80 -2.39 -0.01 2.00 16 13 C -0.10 -2.13 5.25 30.65 0.16 -1.97 16 14 C -0.12 -2.48 6.00 30.68 0.18 -2.30 16 15 C -0.10 -2.13 6.09 30.65 0.19 -1.95 16 16 C 0.03 0.99 5.00 86.32 0.43 1.42 16 17 N -0.48 -13.37 4.10 -875.63 -3.59 -16.95 16 18 C 0.05 1.49 5.44 85.55 0.47 1.96 16 19 C 0.41 18.55 7.20 87.66 0.63 19.18 16 20 O -0.62 -31.55 11.19 -3.05 -0.03 -31.58 16 21 N -0.57 -29.08 5.29 -306.99 -1.62 -30.71 16 22 C -0.33 -18.87 9.68 84.04 0.81 -18.05 16 23 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 24 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 25 N -0.92 -50.12 13.05 21.66 0.28 -49.84 16 26 Si 0.99 43.39 29.55 68.60 2.03 45.41 16 27 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 28 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 29 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 30 H 0.05 0.68 7.72 -2.39 -0.02 0.67 16 31 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.10 0.98 7.76 -2.39 -0.02 0.96 16 34 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.07 0.90 8.14 -2.39 -0.02 0.89 16 36 H 0.10 1.59 8.14 -2.38 -0.02 1.57 16 37 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 38 H 0.42 7.27 7.10 -92.71 -0.66 6.61 16 39 H 0.04 1.29 6.50 -2.39 -0.02 1.28 16 40 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 41 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.09 1.48 7.24 -2.39 -0.02 1.47 16 43 H 0.04 0.97 8.14 -2.38 -0.02 0.95 16 44 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 46 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 47 H 0.04 1.38 5.56 -2.38 -0.01 1.36 16 48 H 0.07 1.92 8.12 -2.38 -0.02 1.90 16 49 H 0.11 3.20 8.14 -2.39 -0.02 3.18 16 50 H 0.10 3.13 6.03 -2.39 -0.01 3.11 16 51 H 0.39 19.42 7.90 -92.71 -0.73 18.69 16 52 H 0.28 14.25 8.31 -92.71 -0.77 13.48 16 Total: -1.00 -73.28 406.52 -0.01 -73.29 By element: Atomic # 1 Polarization: 42.35 SS G_CDS: -0.46 Total: 41.89 kcal Atomic # 6 Polarization: 12.53 SS G_CDS: 6.62 Total: 19.15 kcal Atomic # 7 Polarization: -108.60 SS G_CDS: -7.22 Total: -115.82 kcal Atomic # 8 Polarization: -62.94 SS G_CDS: -0.99 Total: -63.92 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Total: -73.28 -0.01 -73.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265640335.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.098 kcal (2) G-P(sol) polarization free energy of solvation -73.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds