Wall clock time and date at job start Wed Apr 1 2020 00:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46924 * 2 1 4 4 H 1.09004 * 109.47255 * 304.54385 * 3 2 1 5 5 O 1.42898 * 109.47017 * 64.54495 * 3 2 1 6 6 C 1.42906 * 113.99792 * 249.37522 * 5 3 2 7 7 C 1.50697 * 109.46819 * 184.54520 * 3 2 1 8 8 O 1.21282 * 119.99476 * 244.99954 * 7 3 2 9 9 N 1.34776 * 120.00195 * 65.00110 * 7 3 2 10 10 C 1.46507 * 119.99983 * 179.97438 * 9 7 3 11 11 C 1.52998 * 109.46998 * 184.98413 * 10 9 7 12 12 H 1.08997 * 109.45918 * 186.23653 * 11 10 9 13 13 C 1.53033 * 109.45923 * 66.26947 * 11 10 9 14 14 C 1.53121 * 109.27586 * 180.80231 * 13 11 10 15 15 C 1.53112 * 109.16196 * 57.65759 * 14 13 11 16 16 C 1.53045 * 109.27761 * 302.34362 * 15 14 13 17 17 N 1.46843 * 109.46180 * 306.21560 * 11 10 9 18 18 C 1.46894 * 111.00197 * 305.85471 * 17 11 10 19 19 C 1.50701 * 109.47037 * 164.30012 * 18 17 11 20 20 O 1.21288 * 120.00433 * 359.97438 * 19 18 17 21 21 N 1.34784 * 119.99843 * 179.97438 * 19 18 17 22 22 C 1.37094 * 119.99808 * 179.97438 * 21 19 18 23 23 H 1.08002 * 120.00319 * 359.97438 * 22 21 19 24 24 C 1.38950 * 119.99947 * 180.28012 * 22 21 19 25 25 N 1.31410 * 119.99773 * 359.71381 * 24 22 21 26 26 Si 1.86800 * 119.99955 * 179.72229 * 24 22 21 27 27 H 1.48506 * 109.47249 * 59.99771 * 26 24 22 28 28 H 1.48497 * 109.46860 * 179.97438 * 26 24 22 29 29 H 1.48501 * 109.47295 * 299.99622 * 26 24 22 30 30 H 1.08997 * 109.47552 * 54.08380 * 1 2 3 31 31 H 1.09001 * 109.46939 * 174.08771 * 1 2 3 32 32 H 1.09000 * 109.46921 * 294.07954 * 1 2 3 33 33 H 1.09003 * 109.46963 * 240.00375 * 2 1 3 34 34 H 1.08999 * 109.47113 * 120.00186 * 2 1 3 35 35 H 1.08999 * 109.46803 * 185.13871 * 6 5 3 36 36 H 1.08996 * 109.46967 * 305.13965 * 6 5 3 37 37 H 1.08995 * 109.46829 * 65.13585 * 6 5 3 38 38 H 0.96991 * 120.00127 * 359.97438 * 9 7 3 39 39 H 1.09008 * 109.46648 * 64.98700 * 10 9 7 40 40 H 1.09003 * 109.46883 * 304.98943 * 10 9 7 41 41 H 1.08991 * 109.50707 * 300.74316 * 13 11 10 42 42 H 1.09001 * 109.50694 * 60.82312 * 13 11 10 43 43 H 1.09005 * 109.52239 * 177.56161 * 14 13 11 44 44 H 1.09002 * 109.52393 * 297.67936 * 14 13 11 45 45 H 1.08997 * 109.50405 * 62.28411 * 15 14 13 46 46 H 1.08997 * 109.50583 * 182.36377 * 15 14 13 47 47 H 1.09003 * 109.45843 * 299.16793 * 16 15 14 48 48 H 1.08990 * 109.46570 * 179.19469 * 16 15 14 49 49 H 1.08994 * 109.47204 * 44.30030 * 18 17 11 50 50 H 1.09007 * 109.47217 * 284.29833 * 18 17 11 51 51 H 0.97004 * 119.99799 * 359.97438 * 21 19 18 52 52 H 0.97003 * 120.00021 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6117 1.9794 -0.8465 5 8 1.6528 2.0846 1.2165 6 6 0.6618 3.1003 1.0477 7 6 3.5428 1.4440 -0.1126 8 8 4.2190 1.8632 0.8028 9 7 4.1353 0.9795 -1.2305 10 6 5.5962 0.9815 -1.3401 11 6 6.0030 0.5241 -2.7423 12 1 7.0869 0.4191 -2.7898 13 6 5.5459 1.5621 -3.7697 14 6 5.9373 1.0907 -5.1730 15 6 5.3076 -0.2798 -5.4367 16 6 5.7716 -1.2645 -4.3608 17 7 5.3727 -0.7690 -3.0372 18 6 5.6791 -1.7545 -1.9919 19 6 4.7319 -2.9209 -2.1082 20 8 3.8847 -2.9301 -2.9761 21 7 4.8262 -3.9540 -1.2476 22 6 3.9642 -5.0148 -1.3531 23 1 3.2093 -5.0225 -2.1254 24 6 4.0577 -6.0771 -0.4623 25 7 4.9760 -6.0675 0.4777 26 14 2.8782 -7.5189 -0.6011 27 1 3.0283 -8.1547 -1.9348 28 1 3.1852 -8.5133 0.4582 29 1 1.4837 -7.0353 -0.4375 30 1 -0.3634 0.6028 -0.8322 31 1 -0.3633 -1.0222 -0.1059 32 1 -0.3633 0.4193 0.9382 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 0.4886 3.6007 2.0004 36 1 1.0081 3.8272 0.3130 37 1 -0.2670 2.6475 0.7009 38 1 3.5945 0.6439 -1.9624 39 1 6.0170 0.3011 -0.5996 40 1 5.9725 1.9891 -1.1630 41 1 4.4636 1.6778 -3.7134 42 1 6.0254 2.5181 -3.5594 43 1 5.5755 1.8060 -5.9117 44 1 7.0224 1.0135 -5.2419 45 1 4.2215 -0.1931 -5.4066 46 1 5.6168 -0.6397 -6.4179 47 1 6.8566 -1.3611 -4.4006 48 1 5.3137 -2.2377 -4.5374 49 1 5.5665 -1.2914 -1.0117 50 1 6.7040 -2.1054 -2.1125 51 1 5.5040 -3.9468 -0.5537 52 1 5.0410 -6.8089 1.0998 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265640337.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:59:27 Heat of formation + Delta-G solvation = -121.533783 kcal Electronic energy + Delta-G solvation = -32095.655226 eV Core-core repulsion = 27901.996956 eV Total energy + Delta-G solvation = -4193.658270 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.23787 -39.30652 -37.79787 -37.41295 -34.69077 -34.01646 -33.42549 -33.03266 -31.20482 -31.06097 -28.41635 -27.56837 -26.55530 -25.29796 -24.56159 -22.93923 -22.14264 -21.34357 -20.46592 -19.42218 -19.10305 -17.84940 -17.47135 -17.04629 -16.25104 -15.85504 -15.52991 -15.33237 -15.10595 -14.61249 -14.56607 -14.41723 -14.17147 -13.95383 -13.88946 -13.69280 -13.47428 -13.34732 -13.16913 -12.81792 -12.58253 -12.24988 -12.08209 -11.92517 -11.81192 -11.60786 -11.50675 -11.44625 -11.40573 -11.15921 -11.02178 -10.78436 -10.71035 -10.44677 -10.30189 -10.24527 -10.17608 -10.15404 -9.45890 -9.25582 -8.88905 -8.48019 -7.97335 -7.90045 -6.40310 -3.81295 2.72961 3.03602 3.19790 3.26107 3.29571 3.81681 3.91948 4.00198 4.22526 4.60104 4.70707 4.73974 4.85667 4.89852 4.93174 5.06093 5.19552 5.19783 5.24254 5.24734 5.28687 5.30405 5.37098 5.47601 5.52375 5.55965 5.62421 5.67101 5.72152 5.73459 5.81644 5.86152 5.95079 6.03014 6.03899 6.05741 6.13410 6.15584 6.27900 6.31411 6.39716 6.45115 6.55872 6.97836 7.23626 7.33611 7.55511 7.70054 8.06800 8.38318 8.62707 9.19042 9.55963 10.07338 10.77309 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.007439 B = 0.004355 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3762.849159 B = 6428.228390 C = 9015.764426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.135 4.135 3 C 0.076 3.924 4 H 0.085 0.915 5 O -0.357 6.357 6 C 0.028 3.972 7 C 0.504 3.496 8 O -0.532 6.532 9 N -0.711 5.711 10 C 0.125 3.875 11 C 0.070 3.930 12 H 0.054 0.946 13 C -0.108 4.108 14 C -0.120 4.120 15 C -0.114 4.114 16 C 0.059 3.941 17 N -0.508 5.508 18 C 0.037 3.963 19 C 0.446 3.554 20 O -0.578 6.578 21 N -0.564 5.564 22 C -0.299 4.299 23 H 0.102 0.898 24 C 0.023 3.977 25 N -0.901 5.901 26 Si 0.929 3.071 27 H -0.274 1.274 28 H -0.285 1.285 29 H -0.274 1.274 30 H 0.051 0.949 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.040 0.960 37 H 0.044 0.956 38 H 0.412 0.588 39 H 0.068 0.932 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.065 0.935 43 H 0.061 0.939 44 H 0.056 0.944 45 H 0.072 0.928 46 H 0.062 0.938 47 H 0.023 0.977 48 H 0.096 0.904 49 H 0.092 0.908 50 H 0.047 0.953 51 H 0.391 0.609 52 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.746 16.889 -6.117 18.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.173 4.173 3 C 0.015 3.985 4 H 0.103 0.897 5 O -0.274 6.274 6 C -0.069 4.069 7 C 0.289 3.711 8 O -0.407 6.407 9 N -0.366 5.366 10 C 0.001 3.999 11 C -0.039 4.039 12 H 0.072 0.928 13 C -0.146 4.146 14 C -0.158 4.158 15 C -0.152 4.152 16 C -0.069 4.069 17 N -0.233 5.233 18 C -0.094 4.094 19 C 0.231 3.769 20 O -0.462 6.462 21 N -0.201 5.201 22 C -0.428 4.428 23 H 0.120 0.880 24 C -0.178 4.178 25 N -0.542 5.542 26 Si 0.756 3.244 27 H -0.200 1.200 28 H -0.210 1.210 29 H -0.199 1.199 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.105 0.895 36 H 0.059 0.941 37 H 0.063 0.937 38 H 0.249 0.751 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.083 0.917 43 H 0.079 0.921 44 H 0.075 0.925 45 H 0.091 0.909 46 H 0.081 0.919 47 H 0.041 0.959 48 H 0.114 0.886 49 H 0.110 0.890 50 H 0.065 0.935 51 H 0.224 0.776 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.209 17.060 -5.707 18.125 hybrid contribution 0.479 -1.035 -0.067 1.143 sum -1.729 16.025 -5.774 17.121 Atomic orbital electron populations 1.21738 0.94892 1.02459 1.01435 1.21892 0.97041 0.93764 1.04601 1.22070 0.91728 0.95870 0.88843 0.89702 1.88033 1.58591 1.52289 1.28481 1.22925 0.91044 0.90403 1.02497 1.20743 0.90301 0.77692 0.82332 1.90691 1.65521 1.46204 1.38333 1.45840 1.07521 1.64256 1.19026 1.21445 0.80997 1.01411 0.96089 1.21949 0.97019 0.90981 0.93989 0.92831 1.21593 1.02060 0.96902 0.94047 1.21592 1.00247 0.97405 0.96551 1.21553 1.01642 0.94283 0.97675 1.22150 0.96955 1.00050 0.87698 1.61469 1.58556 1.01311 1.01968 1.21998 0.97647 0.93597 0.96189 1.19674 0.87765 0.84256 0.85181 1.90493 1.38587 1.80265 1.36821 1.41868 1.31951 1.17080 1.29177 1.19607 1.12401 0.95929 1.14884 0.88021 1.25242 0.97728 0.99223 0.95642 1.69604 1.33672 1.33186 1.17739 0.85954 0.80281 0.80337 0.77849 1.19976 1.21008 1.19918 0.93016 0.91785 0.92444 0.89455 0.90254 0.89479 0.94112 0.93724 0.75087 0.91353 0.90920 0.91045 0.91651 0.92066 0.92476 0.90890 0.91944 0.95897 0.88577 0.89001 0.93470 0.77594 0.91830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.14 37.16 0.34 -1.35 16 2 C -0.13 -1.83 5.61 -26.73 -0.15 -1.98 16 3 C 0.08 0.99 2.65 -27.88 -0.07 0.92 16 4 H 0.09 0.86 7.58 -51.93 -0.39 0.47 16 5 O -0.36 -5.03 9.52 -55.09 -0.52 -5.55 16 6 C 0.03 0.27 10.56 101.05 1.07 1.34 16 7 C 0.50 7.66 7.18 -10.99 -0.08 7.58 16 8 O -0.53 -10.12 16.50 -14.31 -0.24 -10.36 16 9 N -0.71 -9.37 4.98 -60.29 -0.30 -9.67 16 10 C 0.12 1.56 4.57 -4.04 -0.02 1.54 16 11 C 0.07 0.81 2.11 -67.73 -0.14 0.66 16 12 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 13 C -0.11 -1.06 5.27 -26.65 -0.14 -1.20 16 14 C -0.12 -1.15 6.00 -26.61 -0.16 -1.31 16 15 C -0.11 -1.32 6.09 -26.65 -0.16 -1.48 16 16 C 0.06 0.85 5.11 -3.83 -0.02 0.83 16 17 N -0.51 -7.35 3.44 -228.13 -0.78 -8.14 16 18 C 0.04 0.62 5.26 -4.98 -0.03 0.60 16 19 C 0.45 9.94 7.47 -10.98 -0.08 9.86 16 20 O -0.58 -14.39 14.39 5.55 0.08 -14.31 16 21 N -0.56 -13.94 5.29 -10.96 -0.06 -13.99 16 22 C -0.30 -8.13 9.68 -14.93 -0.14 -8.27 16 23 H 0.10 2.88 7.16 -52.49 -0.38 2.51 16 24 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 25 N -0.90 -24.48 13.05 55.50 0.72 -23.75 16 26 Si 0.93 20.89 29.55 -169.99 -5.02 15.87 16 27 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 28 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 29 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.63 7.44 -51.93 -0.39 0.24 16 33 H 0.09 1.25 7.78 -51.93 -0.40 0.85 16 34 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.04 0.34 8.07 -51.93 -0.42 -0.07 16 37 H 0.04 0.36 7.17 -51.93 -0.37 -0.01 16 38 H 0.41 5.27 7.16 -40.82 -0.29 4.98 16 39 H 0.07 0.95 6.37 -51.92 -0.33 0.62 16 40 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.07 0.73 7.36 -51.93 -0.38 0.35 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 46 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 48 H 0.10 1.72 6.31 -51.93 -0.33 1.39 16 49 H 0.09 1.52 5.53 -51.93 -0.29 1.23 16 50 H 0.05 0.76 8.06 -51.93 -0.42 0.34 16 51 H 0.39 9.47 7.90 -40.82 -0.32 9.15 16 52 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 410.15 15.07 6.18 6.18 Total: -1.00 -32.17 410.15 -8.75 -40.92 By element: Atomic # 1 Polarization: 23.44 SS G_CDS: -8.92 Total: 14.52 kcal Atomic # 6 Polarization: 8.16 SS G_CDS: 0.11 Total: 8.27 kcal Atomic # 7 Polarization: -55.13 SS G_CDS: -0.42 Total: -55.55 kcal Atomic # 8 Polarization: -29.54 SS G_CDS: -0.68 Total: -30.22 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -32.17 -8.75 -40.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265640337.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.609 kcal (2) G-P(sol) polarization free energy of solvation -32.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds