Wall clock time and date at job start Wed Apr 1 2020 00:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46924 * 2 1 4 4 H 1.09004 * 109.47255 * 304.54385 * 3 2 1 5 5 O 1.42898 * 109.47017 * 64.54495 * 3 2 1 6 6 C 1.42906 * 113.99792 * 249.37522 * 5 3 2 7 7 C 1.50697 * 109.46819 * 184.54520 * 3 2 1 8 8 O 1.21282 * 119.99476 * 244.99954 * 7 3 2 9 9 N 1.34776 * 120.00195 * 65.00110 * 7 3 2 10 10 C 1.46507 * 119.99983 * 179.97438 * 9 7 3 11 11 C 1.52998 * 109.46998 * 184.98413 * 10 9 7 12 12 H 1.08997 * 109.45918 * 186.23653 * 11 10 9 13 13 C 1.53033 * 109.45923 * 66.26947 * 11 10 9 14 14 C 1.53121 * 109.27586 * 180.80231 * 13 11 10 15 15 C 1.53112 * 109.16196 * 57.65759 * 14 13 11 16 16 C 1.53045 * 109.27761 * 302.34362 * 15 14 13 17 17 N 1.46843 * 109.46180 * 306.21560 * 11 10 9 18 18 C 1.46894 * 111.00197 * 305.85471 * 17 11 10 19 19 C 1.50701 * 109.47037 * 164.30012 * 18 17 11 20 20 O 1.21288 * 120.00433 * 359.97438 * 19 18 17 21 21 N 1.34784 * 119.99843 * 179.97438 * 19 18 17 22 22 C 1.37094 * 119.99808 * 179.97438 * 21 19 18 23 23 H 1.08002 * 120.00319 * 359.97438 * 22 21 19 24 24 C 1.38950 * 119.99947 * 180.28012 * 22 21 19 25 25 N 1.31410 * 119.99773 * 359.71381 * 24 22 21 26 26 Si 1.86800 * 119.99955 * 179.72229 * 24 22 21 27 27 H 1.48506 * 109.47249 * 59.99771 * 26 24 22 28 28 H 1.48497 * 109.46860 * 179.97438 * 26 24 22 29 29 H 1.48501 * 109.47295 * 299.99622 * 26 24 22 30 30 H 1.08997 * 109.47552 * 54.08380 * 1 2 3 31 31 H 1.09001 * 109.46939 * 174.08771 * 1 2 3 32 32 H 1.09000 * 109.46921 * 294.07954 * 1 2 3 33 33 H 1.09003 * 109.46963 * 240.00375 * 2 1 3 34 34 H 1.08999 * 109.47113 * 120.00186 * 2 1 3 35 35 H 1.08999 * 109.46803 * 185.13871 * 6 5 3 36 36 H 1.08996 * 109.46967 * 305.13965 * 6 5 3 37 37 H 1.08995 * 109.46829 * 65.13585 * 6 5 3 38 38 H 0.96991 * 120.00127 * 359.97438 * 9 7 3 39 39 H 1.09008 * 109.46648 * 64.98700 * 10 9 7 40 40 H 1.09003 * 109.46883 * 304.98943 * 10 9 7 41 41 H 1.08991 * 109.50707 * 300.74316 * 13 11 10 42 42 H 1.09001 * 109.50694 * 60.82312 * 13 11 10 43 43 H 1.09005 * 109.52239 * 177.56161 * 14 13 11 44 44 H 1.09002 * 109.52393 * 297.67936 * 14 13 11 45 45 H 1.08997 * 109.50405 * 62.28411 * 15 14 13 46 46 H 1.08997 * 109.50583 * 182.36377 * 15 14 13 47 47 H 1.09003 * 109.45843 * 299.16793 * 16 15 14 48 48 H 1.08990 * 109.46570 * 179.19469 * 16 15 14 49 49 H 1.08994 * 109.47204 * 44.30030 * 18 17 11 50 50 H 1.09007 * 109.47217 * 284.29833 * 18 17 11 51 51 H 0.97004 * 119.99799 * 359.97438 * 21 19 18 52 52 H 0.97003 * 120.00021 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6117 1.9794 -0.8465 5 8 1.6528 2.0846 1.2165 6 6 0.6618 3.1003 1.0477 7 6 3.5428 1.4440 -0.1126 8 8 4.2190 1.8632 0.8028 9 7 4.1353 0.9795 -1.2305 10 6 5.5962 0.9815 -1.3401 11 6 6.0030 0.5241 -2.7423 12 1 7.0869 0.4191 -2.7898 13 6 5.5459 1.5621 -3.7697 14 6 5.9373 1.0907 -5.1730 15 6 5.3076 -0.2798 -5.4367 16 6 5.7716 -1.2645 -4.3608 17 7 5.3727 -0.7690 -3.0372 18 6 5.6791 -1.7545 -1.9919 19 6 4.7319 -2.9209 -2.1082 20 8 3.8847 -2.9301 -2.9761 21 7 4.8262 -3.9540 -1.2476 22 6 3.9642 -5.0148 -1.3531 23 1 3.2093 -5.0225 -2.1254 24 6 4.0577 -6.0771 -0.4623 25 7 4.9760 -6.0675 0.4777 26 14 2.8782 -7.5189 -0.6011 27 1 3.0283 -8.1547 -1.9348 28 1 3.1852 -8.5133 0.4582 29 1 1.4837 -7.0353 -0.4375 30 1 -0.3634 0.6028 -0.8322 31 1 -0.3633 -1.0222 -0.1059 32 1 -0.3633 0.4193 0.9382 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 0.4886 3.6007 2.0004 36 1 1.0081 3.8272 0.3130 37 1 -0.2670 2.6475 0.7009 38 1 3.5945 0.6439 -1.9624 39 1 6.0170 0.3011 -0.5996 40 1 5.9725 1.9891 -1.1630 41 1 4.4636 1.6778 -3.7134 42 1 6.0254 2.5181 -3.5594 43 1 5.5755 1.8060 -5.9117 44 1 7.0224 1.0135 -5.2419 45 1 4.2215 -0.1931 -5.4066 46 1 5.6168 -0.6397 -6.4179 47 1 6.8566 -1.3611 -4.4006 48 1 5.3137 -2.2377 -4.5374 49 1 5.5665 -1.2914 -1.0117 50 1 6.7040 -2.1054 -2.1125 51 1 5.5040 -3.9468 -0.5537 52 1 5.0410 -6.8089 1.0998 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265640337.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:59:26 Heat of formation + Delta-G solvation = -144.102633 kcal Electronic energy + Delta-G solvation = -32096.633884 eV Core-core repulsion = 27901.996956 eV Total energy + Delta-G solvation = -4194.636929 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.39386 -40.56465 -39.37131 -38.54280 -35.97072 -35.78130 -34.48259 -34.20983 -33.18809 -32.11186 -29.38600 -28.96181 -27.53421 -26.50435 -26.08634 -24.10152 -23.20889 -22.37012 -21.55851 -20.95589 -20.34092 -19.82366 -18.56251 -18.09268 -17.75824 -16.97685 -16.79695 -16.62585 -16.36854 -16.21011 -15.72332 -15.66296 -15.46084 -15.27892 -15.02141 -14.90176 -14.67211 -14.55750 -14.23427 -13.90786 -13.78394 -13.48621 -13.41845 -13.18816 -13.02936 -12.98382 -12.80653 -12.65686 -12.50195 -12.40587 -12.31893 -12.14037 -12.09556 -11.81371 -11.56655 -11.49359 -11.25537 -11.21235 -11.17632 -10.35591 -10.22894 -10.02271 -9.96520 -9.20967 -8.43454 -5.91655 1.40014 1.41412 1.52093 1.54734 2.00051 2.10002 2.28920 2.69991 3.00345 3.23595 3.39344 3.67315 3.73747 3.80144 3.84679 3.91131 4.03083 4.16288 4.27651 4.28738 4.37299 4.40524 4.42527 4.44914 4.49803 4.51536 4.60306 4.63370 4.66958 4.75410 4.77171 4.84570 4.94952 5.00992 5.06167 5.07496 5.12367 5.13321 5.28745 5.31441 5.36693 5.42814 5.44620 5.54596 5.92044 6.07651 6.10794 6.23783 6.58418 6.63373 7.16310 7.23152 7.60681 8.15723 8.73982 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.007439 B = 0.004355 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3762.849159 B = 6428.228390 C = 9015.764426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.131 4.131 3 C 0.082 3.918 4 H 0.119 0.881 5 O -0.387 6.387 6 C 0.020 3.980 7 C 0.499 3.501 8 O -0.576 6.576 9 N -0.701 5.701 10 C 0.123 3.877 11 C 0.076 3.924 12 H 0.068 0.932 13 C -0.105 4.105 14 C -0.113 4.113 15 C -0.108 4.108 16 C 0.060 3.940 17 N -0.515 5.515 18 C 0.051 3.949 19 C 0.449 3.551 20 O -0.604 6.604 21 N -0.579 5.579 22 C -0.326 4.326 23 H 0.082 0.918 24 C -0.015 4.015 25 N -0.925 5.925 26 Si 0.990 3.010 27 H -0.270 1.270 28 H -0.274 1.274 29 H -0.271 1.271 30 H 0.076 0.924 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.047 0.953 35 H 0.096 0.904 36 H 0.054 0.946 37 H 0.062 0.938 38 H 0.415 0.585 39 H 0.052 0.948 40 H 0.085 0.915 41 H 0.068 0.932 42 H 0.087 0.913 43 H 0.080 0.920 44 H 0.066 0.934 45 H 0.059 0.941 46 H 0.073 0.927 47 H 0.033 0.967 48 H 0.054 0.946 49 H 0.098 0.902 50 H 0.061 0.939 51 H 0.391 0.609 52 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.987 18.643 -7.382 20.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.169 4.169 3 C 0.021 3.979 4 H 0.137 0.863 5 O -0.305 6.305 6 C -0.076 4.076 7 C 0.286 3.714 8 O -0.455 6.455 9 N -0.355 5.355 10 C -0.001 4.001 11 C -0.032 4.032 12 H 0.086 0.914 13 C -0.142 4.142 14 C -0.150 4.150 15 C -0.146 4.146 16 C -0.068 4.068 17 N -0.240 5.240 18 C -0.080 4.080 19 C 0.236 3.764 20 O -0.489 6.489 21 N -0.217 5.217 22 C -0.455 4.455 23 H 0.100 0.900 24 C -0.214 4.214 25 N -0.566 5.566 26 Si 0.813 3.187 27 H -0.196 1.196 28 H -0.199 1.199 29 H -0.197 1.197 30 H 0.095 0.905 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.066 0.934 35 H 0.114 0.886 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.253 0.747 39 H 0.070 0.930 40 H 0.103 0.897 41 H 0.086 0.914 42 H 0.106 0.894 43 H 0.099 0.901 44 H 0.085 0.915 45 H 0.078 0.922 46 H 0.092 0.908 47 H 0.052 0.948 48 H 0.072 0.928 49 H 0.116 0.884 50 H 0.079 0.921 51 H 0.224 0.776 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.446 18.829 -7.006 20.239 hybrid contribution 0.561 -1.521 0.278 1.645 sum -1.885 17.309 -6.728 18.666 Atomic orbital electron populations 1.21711 0.92962 1.02559 1.02774 1.21813 0.98724 0.93997 1.02400 1.22053 0.90236 0.95664 0.89940 0.86325 1.88000 1.59854 1.53442 1.29248 1.23176 0.90812 0.89946 1.03683 1.21231 0.91310 0.76915 0.81972 1.90663 1.66617 1.48426 1.39793 1.45831 1.07976 1.63158 1.18530 1.21518 0.80480 1.01767 0.96314 1.22023 0.97638 0.89592 0.93995 0.91390 1.21613 1.02101 0.97017 0.93501 1.21554 1.00675 0.96093 0.96723 1.21513 1.00962 0.95050 0.97094 1.22086 0.97211 0.99040 0.88439 1.61434 1.59535 1.01765 1.01316 1.21786 0.96545 0.92179 0.97523 1.20599 0.87630 0.84650 0.83549 1.90470 1.39881 1.80945 1.37578 1.41965 1.32100 1.17570 1.30020 1.19601 1.13122 0.97567 1.15246 0.89985 1.26008 0.99132 1.01251 0.95020 1.69683 1.34747 1.33988 1.18188 0.85036 0.78209 0.77314 0.78094 1.19554 1.19920 1.19653 0.90526 0.92597 0.91924 0.90713 0.93385 0.88573 0.92770 0.91964 0.74728 0.92961 0.89666 0.91368 0.89407 0.90129 0.91492 0.92189 0.90828 0.94846 0.92764 0.88447 0.92114 0.77571 0.91545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 9.14 71.98 0.66 -2.46 16 2 C -0.13 -3.59 5.61 30.60 0.17 -3.42 16 3 C 0.08 2.07 2.65 29.85 0.08 2.15 16 4 H 0.12 2.13 7.58 -2.38 -0.02 2.11 16 5 O -0.39 -10.65 9.52 -129.99 -1.24 -11.88 16 6 C 0.02 0.34 10.56 113.37 1.20 1.54 16 7 C 0.50 15.09 7.18 87.66 0.63 15.72 16 8 O -0.58 -22.16 16.50 15.95 0.26 -21.89 16 9 N -0.70 -17.98 4.98 -463.04 -2.31 -20.29 16 10 C 0.12 2.93 4.57 86.38 0.39 3.33 16 11 C 0.08 1.59 2.11 44.94 0.09 1.68 16 12 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 13 C -0.10 -1.71 5.27 30.65 0.16 -1.55 16 14 C -0.11 -1.76 6.00 30.67 0.18 -1.58 16 15 C -0.11 -2.32 6.09 30.65 0.19 -2.13 16 16 C 0.06 1.68 5.11 86.33 0.44 2.12 16 17 N -0.51 -14.50 3.44 -875.67 -3.01 -17.52 16 18 C 0.05 1.73 5.26 85.56 0.45 2.18 16 19 C 0.45 20.61 7.47 87.66 0.65 21.27 16 20 O -0.60 -31.09 14.39 -3.06 -0.04 -31.13 16 21 N -0.58 -29.64 5.29 -306.98 -1.62 -31.26 16 22 C -0.33 -18.31 9.68 84.04 0.81 -17.50 16 23 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 24 C -0.01 -0.80 5.50 84.93 0.47 -0.33 16 25 N -0.92 -50.92 13.05 21.66 0.28 -50.64 16 26 Si 0.99 43.17 29.55 68.60 2.03 45.20 16 27 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 28 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 29 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 30 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.06 1.30 7.44 -2.39 -0.02 1.28 16 33 H 0.07 2.19 7.78 -2.39 -0.02 2.18 16 34 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.05 0.78 8.07 -2.39 -0.02 0.76 16 37 H 0.06 0.84 7.17 -2.39 -0.02 0.83 16 38 H 0.42 10.27 7.16 -92.71 -0.66 9.60 16 39 H 0.05 1.43 6.37 -2.38 -0.02 1.42 16 40 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.07 1.19 7.36 -2.39 -0.02 1.17 16 42 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 44 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 46 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 47 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 48 H 0.05 1.99 6.31 -2.39 -0.02 1.97 16 49 H 0.10 3.24 5.53 -2.39 -0.01 3.23 16 50 H 0.06 1.92 8.06 -2.38 -0.02 1.90 16 51 H 0.39 19.64 7.90 -92.71 -0.73 18.91 16 52 H 0.28 14.32 8.31 -92.71 -0.77 13.55 16 Total: -1.00 -72.26 410.15 0.46 -71.79 By element: Atomic # 1 Polarization: 47.07 SS G_CDS: -0.47 Total: 46.60 kcal Atomic # 6 Polarization: 14.43 SS G_CDS: 6.58 Total: 21.02 kcal Atomic # 7 Polarization: -113.05 SS G_CDS: -6.66 Total: -119.70 kcal Atomic # 8 Polarization: -63.89 SS G_CDS: -1.02 Total: -64.91 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -72.26 0.46 -71.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265640337.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.308 kcal (2) G-P(sol) polarization free energy of solvation -72.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds