Wall clock time and date at job start Wed Apr 1 2020 00:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47283 * 2 1 4 4 H 1.08998 * 109.47405 * 55.10131 * 3 2 1 5 5 O 1.42902 * 109.46851 * 295.10631 * 3 2 1 6 6 C 1.42896 * 114.00045 * 145.87389 * 5 3 2 7 7 C 1.50701 * 109.47353 * 175.10728 * 3 2 1 8 8 O 1.21281 * 119.99851 * 119.99689 * 7 3 2 9 9 N 1.34772 * 119.99937 * 300.00139 * 7 3 2 10 10 C 1.46500 * 119.99853 * 180.02562 * 9 7 3 11 11 C 1.53007 * 109.46986 * 184.98615 * 10 9 7 12 12 H 1.09003 * 109.45478 * 186.06729 * 11 10 9 13 13 C 1.53037 * 109.46431 * 66.08801 * 11 10 9 14 14 C 1.53119 * 109.27932 * 180.80389 * 13 11 10 15 15 C 1.53120 * 109.15690 * 57.65870 * 14 13 11 16 16 C 1.53037 * 109.27821 * 302.34339 * 15 14 13 17 17 N 1.46843 * 109.52433 * 59.18395 * 16 15 14 18 18 C 1.46904 * 111.00196 * 174.16390 * 17 16 15 19 19 C 1.50697 * 109.47487 * 63.84153 * 18 17 16 20 20 O 1.21297 * 119.99713 * 0.02562 * 19 18 17 21 21 N 1.34774 * 120.00061 * 180.02562 * 19 18 17 22 22 C 1.37100 * 119.99781 * 180.02562 * 21 19 18 23 23 H 1.07996 * 120.00198 * 359.97438 * 22 21 19 24 24 C 1.38951 * 119.99603 * 180.27694 * 22 21 19 25 25 N 1.31405 * 120.00534 * 359.72461 * 24 22 21 26 26 Si 1.86803 * 119.99797 * 179.72337 * 24 22 21 27 27 H 1.48506 * 109.47210 * 0.02562 * 26 24 22 28 28 H 1.48504 * 109.47155 * 119.99908 * 26 24 22 29 29 H 1.48501 * 109.47354 * 240.00157 * 26 24 22 30 30 H 1.09005 * 109.46992 * 185.06122 * 1 2 3 31 31 H 1.08998 * 109.47511 * 305.06084 * 1 2 3 32 32 H 1.08999 * 109.47198 * 65.06394 * 1 2 3 33 33 H 1.09002 * 109.47489 * 239.99351 * 2 1 3 34 34 H 1.09005 * 109.47049 * 119.99722 * 2 1 3 35 35 H 1.08996 * 109.47403 * 304.90533 * 6 5 3 36 36 H 1.09002 * 109.47057 * 64.90438 * 6 5 3 37 37 H 1.09005 * 109.47210 * 184.89746 * 6 5 3 38 38 H 0.96996 * 119.99995 * 359.97438 * 9 7 3 39 39 H 1.09000 * 109.47447 * 64.98866 * 10 9 7 40 40 H 1.08996 * 109.47080 * 304.98383 * 10 9 7 41 41 H 1.09004 * 109.49785 * 60.86617 * 13 11 10 42 42 H 1.08999 * 109.53177 * 300.77117 * 13 11 10 43 43 H 1.08999 * 109.52410 * 297.75162 * 14 13 11 44 44 H 1.08994 * 109.52128 * 177.56217 * 14 13 11 45 45 H 1.09001 * 109.50229 * 182.40609 * 15 14 13 46 46 H 1.08995 * 109.54161 * 62.30560 * 15 14 13 47 47 H 1.09004 * 109.46635 * 299.16741 * 16 15 14 48 48 H 1.08998 * 109.45634 * 179.19575 * 16 15 14 49 49 H 1.08999 * 109.46764 * 303.84527 * 18 17 16 50 50 H 1.08996 * 109.47084 * 183.84665 * 18 17 16 51 51 H 0.96995 * 120.00088 * 0.02562 * 21 19 18 52 52 H 0.96998 * 120.00423 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6068 1.9811 0.8428 5 8 1.6598 2.0821 -1.2200 6 6 1.3637 3.4729 -1.0794 7 6 3.5421 1.4442 0.1212 8 8 4.2203 1.9440 -0.7513 9 7 4.1319 0.8904 1.1991 10 6 5.5921 0.8926 1.3171 11 6 6.0045 0.0998 2.5591 12 1 7.0805 0.1913 2.7074 13 6 5.6395 -1.3740 2.3678 14 6 6.0357 -2.1597 3.6209 15 6 5.3279 -1.5561 4.8372 16 6 5.7019 -0.0770 4.9569 17 7 5.3018 0.6309 3.7342 18 6 5.5192 2.0776 3.8682 19 6 6.9922 2.3513 4.0307 20 8 7.7832 1.4317 4.0340 21 7 7.4307 3.6178 4.1724 22 6 8.7708 3.8668 4.3196 23 1 9.4751 3.0480 4.3225 24 6 9.2223 5.1721 4.4715 25 7 8.3654 6.1683 4.4685 26 14 11.0475 5.5108 4.6799 27 1 11.7957 4.2284 4.6480 28 1 11.5179 6.3853 3.5757 29 1 11.2800 6.1878 5.9809 30 1 -0.3633 -1.0237 0.0907 31 1 -0.3634 0.5903 0.8412 32 1 -0.3633 0.4333 -0.9318 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 0.5981 3.6059 -0.3150 36 1 2.2665 4.0088 -0.7865 37 1 1.0006 3.8650 -2.0295 38 1 3.5894 0.4910 1.8970 39 1 5.9479 1.9190 1.4065 40 1 6.0289 0.4325 0.4308 41 1 6.1734 -1.7720 1.5048 42 1 4.5656 -1.4654 2.2053 43 1 7.1150 -2.1013 3.7614 44 1 5.7383 -3.2020 3.5065 45 1 5.6391 -2.0842 5.7385 46 1 4.2489 -1.6499 4.7147 47 1 6.7793 0.0153 5.0939 48 1 5.1882 0.3592 5.8136 49 1 4.9827 2.4461 4.7425 50 1 5.1517 2.5844 2.9760 51 1 6.7981 4.3531 4.1701 52 1 8.6806 7.0796 4.5741 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265640338.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:59:31 Heat of formation + Delta-G solvation = -123.841677 kcal Electronic energy + Delta-G solvation = -31949.457800 eV Core-core repulsion = 27755.699452 eV Total energy + Delta-G solvation = -4193.758348 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.32781 -39.51483 -37.66686 -37.21855 -34.69309 -34.13861 -33.72305 -32.91081 -31.33474 -30.97531 -28.25590 -27.45980 -26.56755 -25.37981 -24.54147 -22.74855 -22.35319 -21.30017 -20.46650 -19.59853 -19.03538 -17.91575 -17.55139 -17.07457 -16.02814 -15.98587 -15.41754 -15.36827 -15.22825 -14.63288 -14.59814 -14.29773 -14.19040 -14.04194 -13.92408 -13.85408 -13.50048 -13.39505 -13.04118 -12.71886 -12.60679 -12.25587 -12.11934 -11.82221 -11.72063 -11.69050 -11.55705 -11.37358 -11.34356 -11.19505 -11.00506 -10.66752 -10.56770 -10.55507 -10.39882 -10.30665 -10.19210 -10.04966 -9.52967 -9.28885 -9.21969 -8.83598 -8.04378 -7.49978 -6.49539 -3.90954 2.69886 3.09852 3.15891 3.22288 3.28728 3.69616 3.77765 4.11218 4.20554 4.59126 4.66492 4.82228 4.87467 4.92474 5.00779 5.04960 5.10088 5.13517 5.17675 5.29534 5.32618 5.39023 5.42793 5.51303 5.61031 5.66824 5.69524 5.71654 5.81384 5.85503 5.87185 5.94840 5.98620 6.00644 6.05919 6.13280 6.16203 6.19854 6.30760 6.36979 6.47007 6.61915 6.74153 6.88166 7.29682 7.38241 7.47455 7.69754 7.96627 8.37381 8.50442 9.08621 9.44342 9.94019 10.66941 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.010314 B = 0.003355 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2714.062321 B = 8343.012403 C =10283.198188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C 0.074 3.926 4 H 0.087 0.913 5 O -0.358 6.358 6 C 0.029 3.971 7 C 0.484 3.516 8 O -0.531 6.531 9 N -0.712 5.712 10 C 0.126 3.874 11 C 0.053 3.947 12 H 0.104 0.896 13 C -0.105 4.105 14 C -0.119 4.119 15 C -0.111 4.111 16 C 0.040 3.960 17 N -0.508 5.508 18 C 0.036 3.964 19 C 0.406 3.594 20 O -0.594 6.594 21 N -0.554 5.554 22 C -0.302 4.302 23 H 0.103 0.897 24 C 0.025 3.975 25 N -0.896 5.896 26 Si 0.929 3.071 27 H -0.268 1.268 28 H -0.280 1.280 29 H -0.281 1.281 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.042 0.958 36 H 0.047 0.953 37 H 0.087 0.913 38 H 0.406 0.594 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.056 0.944 45 H 0.060 0.940 46 H 0.061 0.939 47 H 0.073 0.927 48 H 0.063 0.937 49 H 0.087 0.913 50 H 0.089 0.911 51 H 0.392 0.608 52 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.190 -11.576 -3.674 20.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.155 4.155 3 C 0.013 3.987 4 H 0.105 0.895 5 O -0.275 6.275 6 C -0.067 4.067 7 C 0.269 3.731 8 O -0.407 6.407 9 N -0.366 5.366 10 C 0.002 3.998 11 C -0.056 4.056 12 H 0.121 0.879 13 C -0.143 4.143 14 C -0.157 4.157 15 C -0.149 4.149 16 C -0.087 4.087 17 N -0.232 5.232 18 C -0.096 4.096 19 C 0.191 3.809 20 O -0.482 6.482 21 N -0.189 5.189 22 C -0.432 4.432 23 H 0.121 0.879 24 C -0.178 4.178 25 N -0.537 5.537 26 Si 0.756 3.244 27 H -0.192 1.192 28 H -0.206 1.206 29 H -0.207 1.207 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.060 0.940 36 H 0.065 0.935 37 H 0.106 0.894 38 H 0.242 0.758 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.075 0.925 45 H 0.079 0.921 46 H 0.080 0.920 47 H 0.091 0.909 48 H 0.082 0.918 49 H 0.105 0.895 50 H 0.108 0.892 51 H 0.226 0.774 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -15.652 -11.776 -4.538 20.106 hybrid contribution 1.210 1.109 0.882 1.863 sum -14.442 -10.668 -3.656 18.323 Atomic orbital electron populations 1.21720 0.94564 1.01890 1.02410 1.21613 0.97167 0.93186 1.03541 1.22130 0.91212 0.96173 0.89229 0.89515 1.87955 1.87205 1.22574 1.29787 1.22871 0.99558 0.81942 1.02352 1.21327 0.91014 0.78658 0.82135 1.90719 1.65351 1.44682 1.39975 1.46002 1.08118 1.59840 1.22674 1.21472 0.79743 1.00956 0.97595 1.22250 1.01117 0.93308 0.88878 0.87893 1.21568 1.01081 0.94128 0.97560 1.21542 1.00785 0.98307 0.95030 1.21536 1.00241 0.95485 0.97636 1.22253 1.02016 0.93042 0.91417 1.62418 1.55582 1.01807 1.03403 1.22108 0.94356 0.89978 1.03139 1.21016 0.90763 0.83923 0.85152 1.90392 1.57031 1.43235 1.57533 1.42062 1.08762 1.06394 1.61647 1.19754 0.83375 0.93384 1.46701 0.87876 1.25294 1.00279 0.95158 0.97035 1.69611 1.34775 0.99818 1.49508 0.85814 0.82117 0.78656 0.77844 1.19221 1.20638 1.20682 0.92302 0.92696 0.91923 0.90490 0.90053 0.93989 0.93459 0.89414 0.75781 0.91472 0.91226 0.91938 0.91978 0.91877 0.92503 0.92148 0.91982 0.90861 0.91816 0.89465 0.89249 0.77439 0.91768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.75 37.16 0.36 -0.68 16 2 C -0.12 -0.99 5.58 -26.73 -0.15 -1.14 16 3 C 0.07 0.80 2.54 -27.88 -0.07 0.73 16 4 H 0.09 0.77 7.67 -51.93 -0.40 0.37 16 5 O -0.36 -4.50 9.50 -55.14 -0.52 -5.02 16 6 C 0.03 0.30 10.88 101.05 1.10 1.40 16 7 C 0.48 6.86 7.23 -10.99 -0.08 6.78 16 8 O -0.53 -10.05 16.50 -14.35 -0.24 -10.29 16 9 N -0.71 -8.93 4.82 -60.29 -0.29 -9.22 16 10 C 0.13 1.91 4.54 -4.04 -0.02 1.89 16 11 C 0.05 0.78 1.66 -67.72 -0.11 0.67 16 12 H 0.10 1.95 5.53 -51.93 -0.29 1.66 16 13 C -0.11 -1.26 5.26 -26.65 -0.14 -1.40 16 14 C -0.12 -1.39 6.00 -26.61 -0.16 -1.55 16 15 C -0.11 -1.30 6.09 -26.65 -0.16 -1.46 16 16 C 0.04 0.59 5.06 -3.84 -0.02 0.57 16 17 N -0.51 -7.31 4.02 -228.12 -0.92 -8.23 16 18 C 0.04 0.59 5.33 -4.98 -0.03 0.57 16 19 C 0.41 8.88 7.14 -10.99 -0.08 8.80 16 20 O -0.59 -14.42 11.19 5.54 0.06 -14.35 16 21 N -0.55 -13.56 5.29 -10.96 -0.06 -13.62 16 22 C -0.30 -8.22 9.68 -14.93 -0.14 -8.36 16 23 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 24 C 0.02 0.65 5.50 -17.47 -0.10 0.56 16 25 N -0.90 -24.12 13.05 55.50 0.72 -23.39 16 26 Si 0.93 20.85 29.55 -169.99 -5.02 15.83 16 27 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 28 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 29 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.49 7.96 -51.93 -0.41 0.07 16 33 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.08 0.57 7.43 -51.93 -0.39 0.18 16 35 H 0.04 0.33 7.98 -51.93 -0.41 -0.08 16 36 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.41 4.27 6.81 -40.82 -0.28 3.99 16 39 H 0.07 1.21 6.64 -51.93 -0.34 0.86 16 40 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.06 0.66 7.36 -51.93 -0.38 0.28 16 43 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 46 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.07 1.35 5.82 -51.93 -0.30 1.05 16 48 H 0.06 0.89 8.09 -51.93 -0.42 0.47 16 49 H 0.09 1.33 8.10 -51.93 -0.42 0.91 16 50 H 0.09 1.45 6.23 -51.93 -0.32 1.12 16 51 H 0.39 9.36 7.90 -40.82 -0.32 9.03 16 52 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 406.02 15.07 6.12 6.12 Total: -1.00 -31.56 406.02 -8.79 -40.36 By element: Atomic # 1 Polarization: 23.32 SS G_CDS: -8.85 Total: 14.46 kcal Atomic # 6 Polarization: 7.16 SS G_CDS: 0.20 Total: 7.36 kcal Atomic # 7 Polarization: -53.92 SS G_CDS: -0.54 Total: -54.46 kcal Atomic # 8 Polarization: -28.97 SS G_CDS: -0.70 Total: -29.66 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -31.56 -8.79 -40.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265640338.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.486 kcal (2) G-P(sol) polarization free energy of solvation -31.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds