Wall clock time and date at job start Wed Apr 1 2020 00:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47283 * 2 1 4 4 H 1.08998 * 109.47405 * 55.10131 * 3 2 1 5 5 O 1.42902 * 109.46851 * 295.10631 * 3 2 1 6 6 C 1.42896 * 114.00045 * 145.87389 * 5 3 2 7 7 C 1.50701 * 109.47353 * 175.10728 * 3 2 1 8 8 O 1.21281 * 119.99851 * 119.99689 * 7 3 2 9 9 N 1.34772 * 119.99937 * 300.00139 * 7 3 2 10 10 C 1.46500 * 119.99853 * 180.02562 * 9 7 3 11 11 C 1.53007 * 109.46986 * 184.98615 * 10 9 7 12 12 H 1.09003 * 109.45478 * 186.06729 * 11 10 9 13 13 C 1.53037 * 109.46431 * 66.08801 * 11 10 9 14 14 C 1.53119 * 109.27932 * 180.80389 * 13 11 10 15 15 C 1.53120 * 109.15690 * 57.65870 * 14 13 11 16 16 C 1.53037 * 109.27821 * 302.34339 * 15 14 13 17 17 N 1.46843 * 109.52433 * 59.18395 * 16 15 14 18 18 C 1.46904 * 111.00196 * 174.16390 * 17 16 15 19 19 C 1.50697 * 109.47487 * 63.84153 * 18 17 16 20 20 O 1.21297 * 119.99713 * 0.02562 * 19 18 17 21 21 N 1.34774 * 120.00061 * 180.02562 * 19 18 17 22 22 C 1.37100 * 119.99781 * 180.02562 * 21 19 18 23 23 H 1.07996 * 120.00198 * 359.97438 * 22 21 19 24 24 C 1.38951 * 119.99603 * 180.27694 * 22 21 19 25 25 N 1.31405 * 120.00534 * 359.72461 * 24 22 21 26 26 Si 1.86803 * 119.99797 * 179.72337 * 24 22 21 27 27 H 1.48506 * 109.47210 * 0.02562 * 26 24 22 28 28 H 1.48504 * 109.47155 * 119.99908 * 26 24 22 29 29 H 1.48501 * 109.47354 * 240.00157 * 26 24 22 30 30 H 1.09005 * 109.46992 * 185.06122 * 1 2 3 31 31 H 1.08998 * 109.47511 * 305.06084 * 1 2 3 32 32 H 1.08999 * 109.47198 * 65.06394 * 1 2 3 33 33 H 1.09002 * 109.47489 * 239.99351 * 2 1 3 34 34 H 1.09005 * 109.47049 * 119.99722 * 2 1 3 35 35 H 1.08996 * 109.47403 * 304.90533 * 6 5 3 36 36 H 1.09002 * 109.47057 * 64.90438 * 6 5 3 37 37 H 1.09005 * 109.47210 * 184.89746 * 6 5 3 38 38 H 0.96996 * 119.99995 * 359.97438 * 9 7 3 39 39 H 1.09000 * 109.47447 * 64.98866 * 10 9 7 40 40 H 1.08996 * 109.47080 * 304.98383 * 10 9 7 41 41 H 1.09004 * 109.49785 * 60.86617 * 13 11 10 42 42 H 1.08999 * 109.53177 * 300.77117 * 13 11 10 43 43 H 1.08999 * 109.52410 * 297.75162 * 14 13 11 44 44 H 1.08994 * 109.52128 * 177.56217 * 14 13 11 45 45 H 1.09001 * 109.50229 * 182.40609 * 15 14 13 46 46 H 1.08995 * 109.54161 * 62.30560 * 15 14 13 47 47 H 1.09004 * 109.46635 * 299.16741 * 16 15 14 48 48 H 1.08998 * 109.45634 * 179.19575 * 16 15 14 49 49 H 1.08999 * 109.46764 * 303.84527 * 18 17 16 50 50 H 1.08996 * 109.47084 * 183.84665 * 18 17 16 51 51 H 0.96995 * 120.00088 * 0.02562 * 21 19 18 52 52 H 0.96998 * 120.00423 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6068 1.9811 0.8428 5 8 1.6598 2.0821 -1.2200 6 6 1.3637 3.4729 -1.0794 7 6 3.5421 1.4442 0.1212 8 8 4.2203 1.9440 -0.7513 9 7 4.1319 0.8904 1.1991 10 6 5.5921 0.8926 1.3171 11 6 6.0045 0.0998 2.5591 12 1 7.0805 0.1913 2.7074 13 6 5.6395 -1.3740 2.3678 14 6 6.0357 -2.1597 3.6209 15 6 5.3279 -1.5561 4.8372 16 6 5.7019 -0.0770 4.9569 17 7 5.3018 0.6309 3.7342 18 6 5.5192 2.0776 3.8682 19 6 6.9922 2.3513 4.0307 20 8 7.7832 1.4317 4.0340 21 7 7.4307 3.6178 4.1724 22 6 8.7708 3.8668 4.3196 23 1 9.4751 3.0480 4.3225 24 6 9.2223 5.1721 4.4715 25 7 8.3654 6.1683 4.4685 26 14 11.0475 5.5108 4.6799 27 1 11.7957 4.2284 4.6480 28 1 11.5179 6.3853 3.5757 29 1 11.2800 6.1878 5.9809 30 1 -0.3633 -1.0237 0.0907 31 1 -0.3634 0.5903 0.8412 32 1 -0.3633 0.4333 -0.9318 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 0.5981 3.6059 -0.3150 36 1 2.2665 4.0088 -0.7865 37 1 1.0006 3.8650 -2.0295 38 1 3.5894 0.4910 1.8970 39 1 5.9479 1.9190 1.4065 40 1 6.0289 0.4325 0.4308 41 1 6.1734 -1.7720 1.5048 42 1 4.5656 -1.4654 2.2053 43 1 7.1150 -2.1013 3.7614 44 1 5.7383 -3.2020 3.5065 45 1 5.6391 -2.0842 5.7385 46 1 4.2489 -1.6499 4.7147 47 1 6.7793 0.0153 5.0939 48 1 5.1882 0.3592 5.8136 49 1 4.9827 2.4461 4.7425 50 1 5.1517 2.5844 2.9760 51 1 6.7981 4.3531 4.1701 52 1 8.6806 7.0796 4.5741 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265640338.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:59:30 Heat of formation + Delta-G solvation = -146.627721 kcal Electronic energy + Delta-G solvation = -31950.445877 eV Core-core repulsion = 27755.699452 eV Total energy + Delta-G solvation = -4194.746425 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.59393 -40.78792 -39.10509 -38.35901 -36.05865 -35.83375 -34.51946 -34.18595 -33.30280 -32.08235 -29.18828 -28.82381 -27.58376 -26.60008 -26.09707 -23.97377 -23.12538 -22.47183 -21.54149 -21.14322 -20.48579 -19.75121 -18.63094 -18.01114 -17.72667 -17.17177 -16.73189 -16.57705 -16.39565 -16.24845 -15.72672 -15.60977 -15.56438 -15.27195 -15.02427 -14.97096 -14.80115 -14.35294 -14.28523 -14.03291 -13.52790 -13.48389 -13.31358 -13.13172 -13.03266 -12.90775 -12.82049 -12.58457 -12.46380 -12.43266 -12.17087 -12.02589 -11.99572 -11.68455 -11.56665 -11.54721 -11.38737 -11.26312 -11.14326 -10.96675 -10.28702 -10.06221 -10.01872 -9.04795 -8.50011 -5.99854 1.30825 1.36804 1.50255 1.59169 1.96470 2.11598 2.24981 2.84427 2.94540 3.15982 3.23182 3.70326 3.75600 3.86329 3.94122 4.00226 4.05038 4.23172 4.33417 4.36688 4.40313 4.46565 4.46758 4.53828 4.55091 4.59530 4.63175 4.68982 4.78350 4.84091 4.86897 4.92599 4.95947 5.05797 5.15623 5.16558 5.19791 5.22992 5.31587 5.32112 5.36392 5.43936 5.48692 5.60139 5.88283 6.03818 6.04960 6.11335 6.54058 6.65050 7.07874 7.29333 7.51194 8.05430 8.65602 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.010314 B = 0.003355 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2714.062321 B = 8343.012403 C =10283.198188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.113 4.113 3 C 0.077 3.923 4 H 0.114 0.886 5 O -0.380 6.380 6 C 0.025 3.975 7 C 0.481 3.519 8 O -0.586 6.586 9 N -0.692 5.692 10 C 0.136 3.864 11 C 0.060 3.940 12 H 0.058 0.942 13 C -0.099 4.099 14 C -0.118 4.118 15 C -0.103 4.103 16 C 0.038 3.962 17 N -0.483 5.483 18 C 0.046 3.954 19 C 0.409 3.591 20 O -0.618 6.618 21 N -0.571 5.571 22 C -0.331 4.331 23 H 0.078 0.922 24 C -0.013 4.013 25 N -0.919 5.919 26 Si 0.990 3.010 27 H -0.274 1.274 28 H -0.273 1.273 29 H -0.269 1.269 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.050 0.950 33 H 0.062 0.938 34 H 0.102 0.898 35 H 0.069 0.931 36 H 0.024 0.976 37 H 0.099 0.901 38 H 0.421 0.579 39 H 0.032 0.968 40 H 0.061 0.939 41 H 0.065 0.935 42 H 0.088 0.912 43 H 0.036 0.964 44 H 0.085 0.915 45 H 0.071 0.929 46 H 0.087 0.913 47 H 0.029 0.971 48 H 0.074 0.926 49 H 0.111 0.889 50 H 0.097 0.903 51 H 0.394 0.606 52 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.911 -13.050 -2.828 23.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.151 4.151 3 C 0.016 3.984 4 H 0.132 0.868 5 O -0.297 6.297 6 C -0.071 4.071 7 C 0.268 3.732 8 O -0.466 6.466 9 N -0.348 5.348 10 C 0.011 3.989 11 C -0.049 4.049 12 H 0.076 0.924 13 C -0.137 4.137 14 C -0.156 4.156 15 C -0.141 4.141 16 C -0.089 4.089 17 N -0.206 5.206 18 C -0.086 4.086 19 C 0.196 3.804 20 O -0.506 6.506 21 N -0.207 5.207 22 C -0.461 4.461 23 H 0.096 0.904 24 C -0.213 4.213 25 N -0.560 5.560 26 Si 0.814 3.186 27 H -0.198 1.198 28 H -0.199 1.199 29 H -0.194 1.194 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.121 0.879 35 H 0.088 0.912 36 H 0.043 0.957 37 H 0.117 0.883 38 H 0.260 0.740 39 H 0.051 0.949 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.106 0.894 43 H 0.055 0.945 44 H 0.104 0.896 45 H 0.090 0.910 46 H 0.106 0.894 47 H 0.047 0.953 48 H 0.093 0.907 49 H 0.129 0.871 50 H 0.115 0.885 51 H 0.227 0.773 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -18.414 -13.282 -3.663 22.998 hybrid contribution 2.045 1.493 0.598 2.602 sum -16.368 -11.789 -3.065 20.403 Atomic orbital electron populations 1.21695 0.93132 1.02953 1.02388 1.21661 0.98299 0.91250 1.03885 1.22339 0.88309 0.98090 0.89695 0.86825 1.87939 1.87069 1.23616 1.31104 1.23003 0.99290 0.80800 1.04007 1.22132 0.92589 0.77260 0.81255 1.90698 1.66879 1.47065 1.41953 1.45796 1.06854 1.59309 1.22796 1.21165 0.81416 0.98833 0.97483 1.22093 0.98489 0.95628 0.88708 0.92429 1.21557 1.02661 0.91421 0.98070 1.21550 0.99305 0.99923 0.94787 1.21515 1.01683 0.92763 0.98106 1.22299 0.99407 0.95657 0.91584 1.62539 1.54240 1.00424 1.03440 1.22151 0.90282 0.91680 1.04452 1.22111 0.93045 0.82739 0.82512 1.90413 1.58720 1.43860 1.57564 1.42150 1.07974 1.07330 1.63295 1.19664 0.84489 0.93298 1.48647 0.90396 1.26026 1.04245 0.94589 0.96412 1.69670 1.36261 1.00121 1.49910 0.84918 0.77230 0.78155 0.78332 1.19833 1.19859 1.19404 0.90936 0.91408 0.93050 0.91918 0.87937 0.91217 0.95714 0.88252 0.74049 0.94936 0.92027 0.91659 0.89368 0.94474 0.89616 0.91028 0.89394 0.95273 0.90709 0.87053 0.88538 0.77281 0.91315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.75 71.98 0.70 -0.83 16 2 C -0.11 -1.58 5.58 30.59 0.17 -1.41 16 3 C 0.08 1.51 2.54 29.85 0.08 1.58 16 4 H 0.11 1.62 7.67 -2.39 -0.02 1.61 16 5 O -0.38 -9.12 9.50 -129.94 -1.23 -10.35 16 6 C 0.03 0.48 10.88 113.37 1.23 1.71 16 7 C 0.48 13.29 7.23 87.66 0.63 13.92 16 8 O -0.59 -22.77 16.50 16.01 0.26 -22.51 16 9 N -0.69 -16.44 4.82 -463.06 -2.23 -18.67 16 10 C 0.14 4.19 4.54 86.38 0.39 4.58 16 11 C 0.06 1.76 1.66 44.94 0.07 1.84 16 12 H 0.06 2.30 5.53 -2.39 -0.01 2.29 16 13 C -0.10 -2.18 5.26 30.65 0.16 -2.02 16 14 C -0.12 -2.49 6.00 30.67 0.18 -2.31 16 15 C -0.10 -2.09 6.09 30.65 0.19 -1.91 16 16 C 0.04 1.07 5.06 86.33 0.44 1.51 16 17 N -0.48 -13.31 4.02 -875.62 -3.52 -16.83 16 18 C 0.05 1.51 5.33 85.56 0.46 1.97 16 19 C 0.41 18.55 7.14 87.66 0.63 19.18 16 20 O -0.62 -31.57 11.19 -3.08 -0.03 -31.60 16 21 N -0.57 -29.10 5.29 -306.99 -1.62 -30.72 16 22 C -0.33 -18.78 9.68 84.04 0.81 -17.96 16 23 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 24 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 25 N -0.92 -50.10 13.05 21.66 0.28 -49.82 16 26 Si 0.99 43.49 29.55 68.60 2.03 45.52 16 27 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 28 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 29 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 30 H 0.07 0.59 8.14 -2.38 -0.02 0.58 16 31 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.05 0.67 7.96 -2.39 -0.02 0.65 16 33 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.10 0.98 7.43 -2.38 -0.02 0.96 16 35 H 0.07 0.93 7.98 -2.39 -0.02 0.91 16 36 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.10 1.61 8.14 -2.38 -0.02 1.59 16 38 H 0.42 7.48 6.81 -92.71 -0.63 6.85 16 39 H 0.03 1.23 6.64 -2.39 -0.02 1.21 16 40 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 42 H 0.09 1.51 7.36 -2.39 -0.02 1.50 16 43 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.09 1.37 8.14 -2.39 -0.02 1.36 16 45 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 46 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 47 H 0.03 1.10 5.82 -2.38 -0.01 1.08 16 48 H 0.07 1.93 8.09 -2.39 -0.02 1.92 16 49 H 0.11 3.18 8.10 -2.39 -0.02 3.16 16 50 H 0.10 3.09 6.23 -2.39 -0.01 3.08 16 51 H 0.39 19.41 7.90 -92.71 -0.73 18.68 16 52 H 0.28 14.16 8.31 -92.71 -0.77 13.39 16 Total: -1.00 -73.65 406.02 0.11 -73.53 By element: Atomic # 1 Polarization: 42.25 SS G_CDS: -0.44 Total: 41.81 kcal Atomic # 6 Polarization: 13.02 SS G_CDS: 6.61 Total: 19.64 kcal Atomic # 7 Polarization: -108.95 SS G_CDS: -7.09 Total: -116.04 kcal Atomic # 8 Polarization: -63.46 SS G_CDS: -1.00 Total: -64.46 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -73.65 0.11 -73.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265640338.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.095 kcal (2) G-P(sol) polarization free energy of solvation -73.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds