Wall clock time and date at job start Wed Apr 1 2020 00:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47268 * 2 1 4 4 C 1.53000 * 109.46991 * 180.02562 * 3 2 1 5 5 O 1.42904 * 109.47176 * 179.97438 * 4 3 2 6 6 C 1.42891 * 114.00312 * 179.97438 * 5 4 3 7 7 H 1.09003 * 109.47292 * 29.99933 * 6 5 4 8 8 C 1.53002 * 109.47360 * 270.00265 * 6 5 4 9 9 C 1.50700 * 109.47184 * 150.00444 * 6 5 4 10 10 O 1.21277 * 119.99997 * 4.99970 * 9 6 5 11 11 N 1.34777 * 119.99945 * 185.00097 * 9 6 5 12 12 C 1.46496 * 120.00302 * 179.97438 * 11 9 6 13 13 H 1.09005 * 110.64679 * 323.30437 * 12 11 9 14 14 C 1.54596 * 110.72427 * 86.45223 * 12 11 9 15 15 C 1.53997 * 105.14199 * 140.49873 * 14 12 11 16 16 N 1.47905 * 107.05499 * 1.22219 * 15 14 12 17 17 C 1.46894 * 111.00181 * 214.15559 * 16 15 14 18 18 C 1.50701 * 109.47383 * 176.64184 * 17 16 15 19 19 O 1.21289 * 119.99735 * 6.13807 * 18 17 16 20 20 N 1.34778 * 119.99981 * 186.14080 * 18 17 16 21 21 C 1.37092 * 119.99746 * 179.97438 * 20 18 17 22 22 H 1.08001 * 120.00242 * 359.97438 * 21 20 18 23 23 C 1.38963 * 119.99755 * 179.72081 * 21 20 18 24 24 N 1.31407 * 119.99464 * 180.27363 * 23 21 20 25 25 Si 1.86798 * 119.99742 * 0.27694 * 23 21 20 26 26 H 1.48496 * 109.47119 * 90.00282 * 25 23 21 27 27 H 1.48504 * 109.46602 * 209.99579 * 25 23 21 28 28 H 1.48500 * 109.47232 * 329.99816 * 25 23 21 29 29 C 1.48529 * 105.82149 * 334.67507 * 16 15 14 30 30 H 1.08997 * 109.47039 * 299.99844 * 1 2 3 31 31 H 1.09004 * 109.47279 * 59.99616 * 1 2 3 32 32 H 1.08995 * 109.47122 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.46888 * 239.99986 * 2 1 3 34 34 H 1.08991 * 109.47366 * 120.00226 * 2 1 3 35 35 H 1.08997 * 109.46963 * 60.00109 * 3 2 1 36 36 H 1.09006 * 109.46866 * 300.00060 * 3 2 1 37 37 H 1.08997 * 109.47396 * 60.00107 * 4 3 2 38 38 H 1.08991 * 109.47287 * 300.00007 * 4 3 2 39 39 H 1.08999 * 109.47297 * 300.00388 * 8 6 5 40 40 H 1.09002 * 109.47157 * 59.99323 * 8 6 5 41 41 H 1.08995 * 109.47827 * 179.97438 * 8 6 5 42 42 H 0.97003 * 120.00046 * 359.97438 * 11 9 6 43 43 H 1.09001 * 110.31030 * 21.57941 * 14 12 11 44 44 H 1.09002 * 110.30772 * 259.41161 * 14 12 11 45 45 H 1.08995 * 109.91575 * 241.87396 * 15 14 12 46 46 H 1.08995 * 109.91744 * 120.57498 * 15 14 12 47 47 H 1.09005 * 109.47121 * 56.63912 * 17 16 15 48 48 H 1.09002 * 109.47007 * 296.64682 * 17 16 15 49 49 H 0.96998 * 119.99828 * 359.97438 * 20 18 17 50 50 H 0.97010 * 119.99135 * 179.97438 * 24 23 21 51 51 H 1.09003 * 110.66708 * 157.64197 * 29 16 15 52 52 H 1.08996 * 110.66479 * 280.76828 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 8 4.0465 2.7897 -0.0012 6 6 5.4709 2.9025 -0.0013 7 1 5.9034 2.0438 -0.5147 8 6 5.9794 2.9434 1.4412 9 6 5.8745 4.1685 -0.7122 10 8 5.0261 4.9467 -1.0934 11 7 7.1784 4.4359 -0.9243 12 6 7.5708 5.6663 -1.6158 13 1 6.8595 5.9066 -2.4060 14 6 7.6954 6.8394 -0.6167 15 6 8.9323 7.6319 -1.0790 16 7 9.4523 6.9576 -2.2883 17 6 10.9175 7.0433 -2.3499 18 6 11.4157 6.2768 -3.5480 19 8 10.6253 5.8087 -4.3400 20 7 12.7395 6.1114 -3.7393 21 6 13.1926 5.4136 -4.8290 22 1 12.4888 4.9962 -5.5338 23 6 14.5577 5.2481 -5.0294 24 7 14.9922 4.5839 -6.0767 25 14 15.7750 5.9696 -3.8099 26 1 16.0619 4.9721 -2.7479 27 1 17.0346 6.3178 -4.5152 28 1 15.1962 7.1923 -3.1974 29 6 9.0055 5.5447 -2.1880 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 3.9330 0.9287 -0.8908 38 1 3.9337 0.9285 0.8890 39 1 5.5469 3.8020 1.9547 40 1 5.6874 2.0277 1.9554 41 1 7.0660 3.0290 1.4412 42 1 7.8570 3.8136 -0.6190 43 1 7.8448 6.4610 0.3945 44 1 6.8060 7.4681 -0.6586 45 1 9.6905 7.6268 -0.2960 46 1 8.6485 8.6567 -1.3183 47 1 11.3449 6.6168 -1.4423 48 1 11.2170 8.0877 -2.4365 49 1 13.3716 6.4860 -3.1061 50 1 15.9451 4.4686 -6.2168 51 1 8.9888 5.0756 -3.1718 52 1 9.6458 4.9863 -1.5053 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266308092.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:13 Heat of formation + Delta-G solvation = -117.266887 kcal Electronic energy + Delta-G solvation = -29593.906152 eV Core-core repulsion = 25400.432908 eV Total energy + Delta-G solvation = -4193.473243 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.36495 -39.24599 -38.22193 -37.45215 -35.39312 -34.56165 -33.94834 -32.21362 -31.70603 -30.76765 -29.25574 -28.39274 -26.77971 -24.88500 -24.02046 -23.46183 -21.62995 -21.32381 -21.11494 -20.16498 -19.39831 -18.31849 -17.57228 -17.35169 -16.47782 -16.34137 -16.00623 -15.48908 -15.31211 -15.04785 -14.88993 -14.57212 -14.38450 -14.14329 -13.74574 -13.69477 -13.50522 -13.23729 -13.04154 -12.89452 -12.78067 -12.61029 -12.49238 -12.38088 -12.12624 -11.83746 -11.81769 -11.67215 -11.50032 -11.43500 -11.33455 -11.24385 -11.05484 -11.00869 -10.70037 -10.62155 -10.21098 -10.01080 -9.65722 -9.58869 -9.17848 -8.59624 -8.24018 -8.12636 -6.34720 -3.86198 2.46703 2.57982 2.99419 3.03000 3.12068 3.50358 3.68901 4.01136 4.07164 4.34857 4.47996 4.51509 4.58003 4.62833 4.65834 4.67717 4.75046 4.85589 4.88548 4.97138 5.03432 5.14938 5.17726 5.18129 5.27393 5.32226 5.35944 5.40734 5.40885 5.50325 5.51232 5.66906 5.67578 5.71799 5.72421 5.83141 5.83703 5.89043 5.91064 5.99378 6.05892 6.33079 6.39732 6.75545 7.01293 7.06369 7.34945 7.54413 8.08787 8.10552 8.56095 8.91420 9.38459 9.78797 10.78279 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.017063 B = 0.001799 C = 0.001707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.626109 B =15563.105593 C =16400.100198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.119 4.119 4 C 0.058 3.942 5 O -0.357 6.357 6 C 0.071 3.929 7 H 0.087 0.913 8 C -0.170 4.170 9 C 0.515 3.485 10 O -0.516 6.516 11 N -0.719 5.719 12 C 0.142 3.858 13 H 0.104 0.896 14 C -0.139 4.139 15 C 0.035 3.965 16 N -0.490 5.490 17 C 0.035 3.965 18 C 0.450 3.550 19 O -0.560 6.560 20 N -0.590 5.590 21 C -0.305 4.305 22 H 0.120 0.880 23 C 0.042 3.958 24 N -0.880 5.880 25 Si 0.879 3.121 26 H -0.271 1.271 27 H -0.276 1.276 28 H -0.269 1.269 29 C 0.035 3.965 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.051 0.949 38 H 0.050 0.950 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.400 0.600 43 H 0.068 0.932 44 H 0.077 0.923 45 H 0.044 0.956 46 H 0.082 0.918 47 H 0.049 0.951 48 H 0.094 0.906 49 H 0.370 0.630 50 H 0.273 0.727 51 H 0.115 0.885 52 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.526 -5.359 19.543 27.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.157 4.157 4 C -0.018 4.018 5 O -0.275 6.275 6 C 0.009 3.991 7 H 0.105 0.895 8 C -0.227 4.227 9 C 0.300 3.700 10 O -0.390 6.390 11 N -0.373 5.373 12 C 0.036 3.964 13 H 0.122 0.878 14 C -0.179 4.179 15 C -0.094 4.094 16 N -0.214 5.214 17 C -0.097 4.097 18 C 0.236 3.764 19 O -0.441 6.441 20 N -0.229 5.229 21 C -0.434 4.434 22 H 0.138 0.862 23 C -0.161 4.161 24 N -0.520 5.520 25 Si 0.706 3.294 26 H -0.197 1.197 27 H -0.201 1.201 28 H -0.195 1.195 29 C -0.093 4.093 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.234 0.766 43 H 0.087 0.913 44 H 0.096 0.904 45 H 0.063 0.937 46 H 0.100 0.900 47 H 0.067 0.933 48 H 0.113 0.887 49 H 0.203 0.797 50 H 0.084 0.916 51 H 0.133 0.867 52 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -19.832 -4.779 18.102 27.273 hybrid contribution 2.213 -0.327 1.814 2.881 sum -17.618 -5.106 19.917 27.077 Atomic orbital electron populations 1.21752 0.95333 1.01737 1.02126 1.21444 0.96356 0.95938 1.02213 1.21544 0.93121 0.97282 1.03720 1.22665 0.95529 0.83433 1.00191 1.88040 1.18266 1.26284 1.94936 1.21876 0.83860 0.96632 0.96689 0.89538 1.22227 1.01655 1.03775 0.95077 1.20343 0.82603 0.87545 0.79506 1.90729 1.50067 1.48748 1.49480 1.45919 1.07026 1.24149 1.60173 1.21940 0.97274 0.82885 0.94256 0.87828 1.22800 0.98654 0.97469 0.98934 1.22924 0.95763 0.99410 0.91274 1.64479 1.09172 1.11505 1.36260 1.22136 0.88413 1.01765 0.97339 1.19609 0.82837 0.85584 0.88408 1.90537 1.54366 1.52327 1.46911 1.42211 1.05528 1.50319 1.24855 1.19432 0.92810 1.29373 1.01793 0.86241 1.25039 0.96897 0.97301 0.96858 1.69624 1.15219 1.40144 1.27012 0.86679 0.81869 0.79457 0.81427 1.19696 1.20133 1.19475 1.23552 0.92217 0.90532 1.02970 0.92607 0.92502 0.92594 0.91760 0.91882 0.91032 0.90835 0.93101 0.93200 0.91052 0.91219 0.90903 0.76600 0.91300 0.90436 0.93729 0.90014 0.93312 0.88740 0.79716 0.91592 0.86712 0.93917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.91 37.16 0.37 -0.44 16 2 C -0.12 -0.69 5.93 -26.73 -0.16 -0.85 16 3 C -0.12 -0.88 5.58 -26.73 -0.15 -1.03 16 4 C 0.06 0.46 5.75 37.16 0.21 0.68 16 5 O -0.36 -4.04 9.53 -55.09 -0.52 -4.56 16 6 C 0.07 0.66 3.13 -27.88 -0.09 0.58 16 7 H 0.09 0.62 7.79 -51.93 -0.40 0.22 16 8 C -0.17 -1.16 9.48 37.16 0.35 -0.81 16 9 C 0.52 6.43 7.18 -10.99 -0.08 6.35 16 10 O -0.52 -8.78 16.23 -14.30 -0.23 -9.02 16 11 N -0.72 -7.75 5.11 -52.01 -0.27 -8.01 16 12 C 0.14 1.85 3.34 -66.07 -0.22 1.62 16 13 H 0.10 1.60 7.70 -51.93 -0.40 1.20 16 14 C -0.14 -1.60 6.67 -25.37 -0.17 -1.77 16 15 C 0.03 0.42 6.70 -2.75 -0.02 0.40 16 16 N -0.49 -7.67 5.11 -231.90 -1.18 -8.85 16 17 C 0.04 0.57 5.30 -4.98 -0.03 0.55 16 18 C 0.45 9.90 7.41 -10.98 -0.08 9.82 16 19 O -0.56 -14.47 13.87 5.55 0.08 -14.39 16 20 N -0.59 -13.66 5.09 -10.96 -0.06 -13.72 16 21 C -0.31 -8.46 10.16 -14.93 -0.15 -8.61 16 22 H 0.12 3.79 7.39 -52.49 -0.39 3.41 16 23 C 0.04 1.13 5.50 -17.46 -0.10 1.04 16 24 N -0.88 -25.33 13.96 55.50 0.77 -24.56 16 25 Si 0.88 18.96 27.74 -169.99 -4.72 14.24 16 26 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 27 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 28 H -0.27 -5.29 6.51 56.52 0.37 -4.92 16 29 C 0.04 0.53 5.20 -1.90 -0.01 0.52 16 30 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.05 0.37 8.08 -51.93 -0.42 -0.05 16 38 H 0.05 0.31 7.87 -51.93 -0.41 -0.10 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.38 7.87 -51.93 -0.41 -0.03 16 41 H 0.07 0.38 7.92 -51.93 -0.41 -0.03 16 42 H 0.40 3.22 8.32 -40.82 -0.34 2.88 16 43 H 0.07 0.70 8.05 -51.93 -0.42 0.28 16 44 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.04 0.47 7.68 -51.93 -0.40 0.07 16 46 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.05 0.68 7.99 -51.93 -0.41 0.26 16 48 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 49 H 0.37 7.52 5.76 -40.82 -0.24 7.28 16 50 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 51 H 0.11 2.13 6.43 -51.93 -0.33 1.79 16 52 H 0.04 0.58 7.89 -51.93 -0.41 0.17 16 LS Contribution 419.21 15.07 6.32 6.32 Total: -1.00 -34.88 419.21 -9.33 -44.21 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: -9.21 Total: 10.30 kcal Atomic # 6 Polarization: 8.36 SS G_CDS: -0.31 Total: 8.05 kcal Atomic # 7 Polarization: -54.41 SS G_CDS: -0.73 Total: -55.14 kcal Atomic # 8 Polarization: -27.29 SS G_CDS: -0.68 Total: -27.97 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -4.72 Total: 14.24 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -34.88 -9.33 -44.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266308092.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.059 kcal (2) G-P(sol) polarization free energy of solvation -34.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds