Wall clock time and date at job start Wed Apr 1 2020 00:05:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47268 * 2 1 4 4 C 1.53000 * 109.46991 * 180.02562 * 3 2 1 5 5 O 1.42904 * 109.47176 * 179.97438 * 4 3 2 6 6 C 1.42891 * 114.00312 * 179.97438 * 5 4 3 7 7 H 1.09003 * 109.47292 * 29.99933 * 6 5 4 8 8 C 1.53002 * 109.47360 * 270.00265 * 6 5 4 9 9 C 1.50700 * 109.47184 * 150.00444 * 6 5 4 10 10 O 1.21277 * 119.99997 * 4.99970 * 9 6 5 11 11 N 1.34777 * 119.99945 * 185.00097 * 9 6 5 12 12 C 1.46496 * 120.00302 * 179.97438 * 11 9 6 13 13 H 1.09005 * 110.64679 * 323.30437 * 12 11 9 14 14 C 1.54596 * 110.72427 * 86.45223 * 12 11 9 15 15 C 1.53997 * 105.14199 * 140.49873 * 14 12 11 16 16 N 1.47905 * 107.05499 * 1.22219 * 15 14 12 17 17 C 1.46894 * 111.00181 * 214.15559 * 16 15 14 18 18 C 1.50701 * 109.47383 * 176.64184 * 17 16 15 19 19 O 1.21289 * 119.99735 * 6.13807 * 18 17 16 20 20 N 1.34778 * 119.99981 * 186.14080 * 18 17 16 21 21 C 1.37092 * 119.99746 * 179.97438 * 20 18 17 22 22 H 1.08001 * 120.00242 * 359.97438 * 21 20 18 23 23 C 1.38963 * 119.99755 * 179.72081 * 21 20 18 24 24 N 1.31407 * 119.99464 * 180.27363 * 23 21 20 25 25 Si 1.86798 * 119.99742 * 0.27694 * 23 21 20 26 26 H 1.48496 * 109.47119 * 90.00282 * 25 23 21 27 27 H 1.48504 * 109.46602 * 209.99579 * 25 23 21 28 28 H 1.48500 * 109.47232 * 329.99816 * 25 23 21 29 29 C 1.48529 * 105.82149 * 334.67507 * 16 15 14 30 30 H 1.08997 * 109.47039 * 299.99844 * 1 2 3 31 31 H 1.09004 * 109.47279 * 59.99616 * 1 2 3 32 32 H 1.08995 * 109.47122 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.46888 * 239.99986 * 2 1 3 34 34 H 1.08991 * 109.47366 * 120.00226 * 2 1 3 35 35 H 1.08997 * 109.46963 * 60.00109 * 3 2 1 36 36 H 1.09006 * 109.46866 * 300.00060 * 3 2 1 37 37 H 1.08997 * 109.47396 * 60.00107 * 4 3 2 38 38 H 1.08991 * 109.47287 * 300.00007 * 4 3 2 39 39 H 1.08999 * 109.47297 * 300.00388 * 8 6 5 40 40 H 1.09002 * 109.47157 * 59.99323 * 8 6 5 41 41 H 1.08995 * 109.47827 * 179.97438 * 8 6 5 42 42 H 0.97003 * 120.00046 * 359.97438 * 11 9 6 43 43 H 1.09001 * 110.31030 * 21.57941 * 14 12 11 44 44 H 1.09002 * 110.30772 * 259.41161 * 14 12 11 45 45 H 1.08995 * 109.91575 * 241.87396 * 15 14 12 46 46 H 1.08995 * 109.91744 * 120.57498 * 15 14 12 47 47 H 1.09005 * 109.47121 * 56.63912 * 17 16 15 48 48 H 1.09002 * 109.47007 * 296.64682 * 17 16 15 49 49 H 0.96998 * 119.99828 * 359.97438 * 20 18 17 50 50 H 0.97010 * 119.99135 * 179.97438 * 24 23 21 51 51 H 1.09003 * 110.66708 * 157.64197 * 29 16 15 52 52 H 1.08996 * 110.66479 * 280.76828 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 8 4.0465 2.7897 -0.0012 6 6 5.4709 2.9025 -0.0013 7 1 5.9034 2.0438 -0.5147 8 6 5.9794 2.9434 1.4412 9 6 5.8745 4.1685 -0.7122 10 8 5.0261 4.9467 -1.0934 11 7 7.1784 4.4359 -0.9243 12 6 7.5708 5.6663 -1.6158 13 1 6.8595 5.9066 -2.4060 14 6 7.6954 6.8394 -0.6167 15 6 8.9323 7.6319 -1.0790 16 7 9.4523 6.9576 -2.2883 17 6 10.9175 7.0433 -2.3499 18 6 11.4157 6.2768 -3.5480 19 8 10.6253 5.8087 -4.3400 20 7 12.7395 6.1114 -3.7393 21 6 13.1926 5.4136 -4.8290 22 1 12.4888 4.9962 -5.5338 23 6 14.5577 5.2481 -5.0294 24 7 14.9922 4.5839 -6.0767 25 14 15.7750 5.9696 -3.8099 26 1 16.0619 4.9721 -2.7479 27 1 17.0346 6.3178 -4.5152 28 1 15.1962 7.1923 -3.1974 29 6 9.0055 5.5447 -2.1880 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 3.9330 0.9287 -0.8908 38 1 3.9337 0.9285 0.8890 39 1 5.5469 3.8020 1.9547 40 1 5.6874 2.0277 1.9554 41 1 7.0660 3.0290 1.4412 42 1 7.8570 3.8136 -0.6190 43 1 7.8448 6.4610 0.3945 44 1 6.8060 7.4681 -0.6586 45 1 9.6905 7.6268 -0.2960 46 1 8.6485 8.6567 -1.3183 47 1 11.3449 6.6168 -1.4423 48 1 11.2170 8.0877 -2.4365 49 1 13.3716 6.4860 -3.1061 50 1 15.9451 4.4686 -6.2168 51 1 8.9888 5.0756 -3.1718 52 1 9.6458 4.9863 -1.5053 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266308092.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:12 Heat of formation + Delta-G solvation = -144.436418 kcal Electronic energy + Delta-G solvation = -29595.084311 eV Core-core repulsion = 25400.432908 eV Total energy + Delta-G solvation = -4194.651403 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.38235 -40.58484 -39.37277 -38.61078 -36.05200 -35.94248 -35.52085 -33.76173 -33.01627 -31.75907 -29.84555 -29.42982 -28.26977 -25.98442 -25.34791 -24.09697 -22.49079 -22.28791 -21.91817 -21.29827 -21.11519 -20.16534 -18.48902 -18.18368 -17.75665 -17.28500 -16.99087 -16.66571 -16.65208 -16.29866 -16.09960 -15.68606 -15.34703 -15.23222 -14.83908 -14.77939 -14.49174 -14.25390 -14.21966 -14.15944 -13.96759 -13.75517 -13.31354 -13.22259 -13.15667 -12.98881 -12.81792 -12.69379 -12.49169 -12.41395 -12.31302 -12.29174 -11.97572 -11.97083 -11.83816 -11.71220 -11.55203 -11.46715 -11.02496 -10.50659 -10.36356 -10.24139 -10.16140 -9.34241 -8.40128 -6.00953 1.31607 1.36400 1.45877 1.50538 1.72386 1.96274 2.24175 2.64835 2.83127 3.16251 3.27378 3.46428 3.68386 3.74304 3.88435 3.94475 4.01986 4.04619 4.13037 4.17792 4.20037 4.25639 4.34714 4.39261 4.39862 4.42093 4.54421 4.65728 4.68975 4.69949 4.77709 4.89228 4.89744 4.93745 4.94418 5.02779 5.07356 5.16566 5.18353 5.23052 5.33503 5.37173 5.43180 5.53552 5.84662 5.92500 6.03630 6.09296 6.49160 6.60893 6.89836 7.16296 7.40944 7.98348 8.77463 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.017063 B = 0.001799 C = 0.001707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.626109 B =15563.105593 C =16400.100198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.117 4.117 3 C -0.118 4.118 4 C 0.054 3.946 5 O -0.390 6.390 6 C 0.072 3.928 7 H 0.111 0.889 8 C -0.163 4.163 9 C 0.511 3.489 10 O -0.571 6.571 11 N -0.705 5.705 12 C 0.147 3.853 13 H 0.069 0.931 14 C -0.129 4.129 15 C 0.040 3.960 16 N -0.519 5.519 17 C 0.047 3.953 18 C 0.449 3.551 19 O -0.607 6.607 20 N -0.590 5.590 21 C -0.327 4.327 22 H 0.054 0.946 23 C -0.015 4.015 24 N -0.935 5.935 25 Si 0.965 3.035 26 H -0.255 1.255 27 H -0.278 1.278 28 H -0.230 1.230 29 C 0.042 3.958 30 H 0.056 0.944 31 H 0.049 0.951 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.054 0.946 37 H 0.055 0.945 38 H 0.073 0.927 39 H 0.057 0.943 40 H 0.088 0.912 41 H 0.093 0.907 42 H 0.416 0.584 43 H 0.091 0.909 44 H 0.070 0.930 45 H 0.074 0.926 46 H 0.089 0.911 47 H 0.088 0.912 48 H 0.122 0.878 49 H 0.390 0.610 50 H 0.279 0.721 51 H 0.068 0.932 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.011 -4.784 23.984 29.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.155 4.155 3 C -0.156 4.156 4 C -0.022 4.022 5 O -0.309 6.309 6 C 0.011 3.989 7 H 0.128 0.872 8 C -0.220 4.220 9 C 0.298 3.702 10 O -0.449 6.449 11 N -0.359 5.359 12 C 0.041 3.959 13 H 0.087 0.913 14 C -0.168 4.168 15 C -0.087 4.087 16 N -0.245 5.245 17 C -0.084 4.084 18 C 0.237 3.763 19 O -0.491 6.491 20 N -0.232 5.232 21 C -0.457 4.457 22 H 0.072 0.928 23 C -0.213 4.213 24 N -0.576 5.576 25 Si 0.785 3.215 26 H -0.180 1.180 27 H -0.203 1.203 28 H -0.154 1.154 29 C -0.086 4.086 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.091 0.909 39 H 0.076 0.924 40 H 0.106 0.894 41 H 0.112 0.888 42 H 0.253 0.747 43 H 0.109 0.891 44 H 0.089 0.911 45 H 0.092 0.908 46 H 0.107 0.893 47 H 0.106 0.894 48 H 0.140 0.860 49 H 0.225 0.775 50 H 0.088 0.912 51 H 0.086 0.914 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -18.312 -4.212 22.580 29.376 hybrid contribution 1.603 -0.563 0.302 1.726 sum -16.709 -4.776 22.882 28.733 Atomic orbital electron populations 1.21770 0.95210 1.02258 1.01871 1.21423 0.96450 0.94694 1.02913 1.21551 0.93170 0.98301 1.02589 1.22841 0.95584 0.82295 1.01446 1.88006 1.19429 1.28314 1.95186 1.22019 0.83426 0.95281 0.98201 0.87180 1.22217 1.02758 1.04142 0.92896 1.21059 0.82286 0.88128 0.78728 1.90703 1.51513 1.50768 1.51877 1.45771 1.07185 1.23744 1.59179 1.21646 0.95238 0.84676 0.94316 0.91315 1.22733 0.98463 0.96339 0.99305 1.22970 0.96201 0.99135 0.90409 1.64391 1.09034 1.11876 1.39159 1.22086 0.88842 1.02223 0.95228 1.20864 0.81967 0.84186 0.89320 1.90540 1.55591 1.53857 1.49112 1.42018 1.06520 1.50525 1.24129 1.18989 0.92545 1.31253 1.02870 0.92765 1.26114 0.98852 0.97136 0.99221 1.69813 1.16121 1.41847 1.29785 0.85369 0.77749 0.80106 0.78316 1.17977 1.20293 1.15366 1.23300 0.93695 0.90648 1.00955 0.92524 0.93168 0.91657 0.91537 0.90619 0.91447 0.92720 0.92691 0.90906 0.92409 0.89353 0.88816 0.74661 0.89076 0.91122 0.90779 0.89303 0.89439 0.86039 0.77461 0.91203 0.91389 0.92026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.91 71.98 0.71 -0.82 16 2 C -0.12 -1.20 5.93 30.59 0.18 -1.02 16 3 C -0.12 -1.73 5.58 30.59 0.17 -1.56 16 4 C 0.05 0.81 5.75 71.98 0.41 1.22 16 5 O -0.39 -8.69 9.53 -129.99 -1.24 -9.93 16 6 C 0.07 1.24 3.13 29.85 0.09 1.34 16 7 H 0.11 1.35 7.79 -2.39 -0.02 1.34 16 8 C -0.16 -1.79 9.48 71.98 0.68 -1.10 16 9 C 0.51 12.68 7.18 87.66 0.63 13.31 16 10 O -0.57 -20.20 16.23 15.97 0.26 -19.94 16 11 N -0.70 -14.54 5.11 -436.85 -2.23 -16.78 16 12 C 0.15 3.81 3.34 46.20 0.15 3.97 16 13 H 0.07 2.27 7.70 -2.38 -0.02 2.25 16 14 C -0.13 -2.69 6.67 31.47 0.21 -2.48 16 15 C 0.04 0.82 6.70 86.45 0.58 1.40 16 16 N -0.52 -15.29 5.11 -887.59 -4.53 -19.83 16 17 C 0.05 1.38 5.30 85.56 0.45 1.83 16 18 C 0.45 19.59 7.41 87.66 0.65 20.24 16 19 O -0.61 -32.85 13.87 -3.06 -0.04 -32.90 16 20 N -0.59 -26.90 5.09 -306.98 -1.56 -28.46 16 21 C -0.33 -18.81 10.16 84.04 0.85 -17.96 16 22 H 0.05 3.74 7.39 -2.91 -0.02 3.72 16 23 C -0.01 -0.80 5.50 84.93 0.47 -0.33 16 24 N -0.93 -55.74 13.96 21.67 0.30 -55.43 16 25 Si 0.96 37.66 27.74 68.60 1.90 39.56 16 26 H -0.26 -9.34 7.11 99.48 0.71 -8.63 16 27 H -0.28 -10.90 7.11 99.48 0.71 -10.19 16 28 H -0.23 -7.49 6.51 99.48 0.65 -6.84 16 29 C 0.04 1.26 5.20 86.65 0.45 1.71 16 30 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.05 0.56 8.14 -2.38 -0.02 0.54 16 32 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 34 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 37 H 0.05 0.75 8.08 -2.39 -0.02 0.73 16 38 H 0.07 0.73 7.87 -2.39 -0.02 0.71 16 39 H 0.06 0.81 8.14 -2.39 -0.02 0.80 16 40 H 0.09 0.67 7.87 -2.39 -0.02 0.65 16 41 H 0.09 0.63 7.92 -2.39 -0.02 0.61 16 42 H 0.42 5.81 8.32 -92.71 -0.77 5.04 16 43 H 0.09 1.51 8.05 -2.39 -0.02 1.49 16 44 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 45 H 0.07 1.13 7.68 -2.39 -0.02 1.12 16 46 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 47 H 0.09 1.94 7.99 -2.38 -0.02 1.92 16 48 H 0.12 2.96 8.14 -2.39 -0.02 2.94 16 49 H 0.39 14.52 5.76 -92.71 -0.53 13.98 16 50 H 0.28 15.18 8.31 -92.70 -0.77 14.41 16 51 H 0.07 2.67 6.43 -2.39 -0.02 2.65 16 52 H 0.06 1.55 7.89 -2.39 -0.02 1.54 16 Total: -1.00 -84.83 419.21 -0.89 -85.72 By element: Atomic # 1 Polarization: 38.70 SS G_CDS: -0.45 Total: 38.25 kcal Atomic # 6 Polarization: 13.03 SS G_CDS: 6.70 Total: 19.73 kcal Atomic # 7 Polarization: -112.47 SS G_CDS: -8.03 Total: -120.50 kcal Atomic # 8 Polarization: -61.74 SS G_CDS: -1.02 Total: -62.77 kcal Atomic # 14 Polarization: 37.66 SS G_CDS: 1.90 Total: 39.56 kcal Total: -84.83 -0.89 -85.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266308092.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.713 kcal (2) G-P(sol) polarization free energy of solvation -84.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds