Wall clock time and date at job start Wed Apr 1 2020 01:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46839 * 2 1 4 4 N 1.46900 * 109.47021 * 174.88970 * 3 2 1 5 5 C 1.46905 * 110.99909 * 76.02128 * 4 3 2 6 6 C 1.52994 * 109.47298 * 199.54404 * 5 4 3 7 7 N 1.46499 * 109.47405 * 174.89045 * 6 5 4 8 8 C 1.34772 * 119.99944 * 180.02562 * 7 6 5 9 9 O 1.21276 * 120.00509 * 359.97438 * 8 7 6 10 10 C 1.50706 * 119.99831 * 179.97438 * 8 7 6 11 11 C 1.53172 * 109.54261 * 299.55684 * 10 8 7 12 12 C 1.53096 * 109.16440 * 183.15223 * 11 10 8 13 13 O 1.42902 * 109.41436 * 57.60545 * 12 11 10 14 14 C 1.42905 * 114.09993 * 298.84687 * 13 12 11 15 15 C 1.53093 * 109.41456 * 61.15365 * 14 13 12 16 16 C 1.46895 * 111.00282 * 199.97793 * 4 3 2 17 17 C 1.50705 * 109.47048 * 66.04398 * 16 4 3 18 18 O 1.21285 * 119.99979 * 0.02562 * 17 16 4 19 19 N 1.34775 * 119.99642 * 180.02562 * 17 16 4 20 20 C 1.37102 * 119.99690 * 180.02562 * 19 17 16 21 21 H 1.08004 * 119.99735 * 359.97438 * 20 19 17 22 22 C 1.38946 * 119.99975 * 179.97438 * 20 19 17 23 23 N 1.31409 * 119.99990 * 179.97438 * 22 20 19 24 24 Si 1.86802 * 120.00221 * 0.02562 * 22 20 19 25 25 H 1.48503 * 109.47212 * 89.99452 * 24 22 20 26 26 H 1.48496 * 109.47266 * 209.99931 * 24 22 20 27 27 H 1.48501 * 109.46710 * 329.99595 * 24 22 20 28 28 H 1.09000 * 109.47346 * 300.00264 * 1 2 3 29 29 H 1.09006 * 109.47296 * 60.00193 * 1 2 3 30 30 H 1.09001 * 109.47155 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46694 * 240.00073 * 2 1 3 32 32 H 1.08996 * 109.47249 * 119.99921 * 2 1 3 33 33 H 1.08996 * 109.47398 * 54.88901 * 3 2 1 34 34 H 1.08997 * 109.47240 * 294.88596 * 3 2 1 35 35 H 1.09004 * 109.46405 * 79.54609 * 5 4 3 36 36 H 1.09004 * 109.47242 * 319.54990 * 5 4 3 37 37 H 1.08999 * 109.46929 * 54.88773 * 6 5 4 38 38 H 1.09001 * 109.47353 * 294.89327 * 6 5 4 39 39 H 0.97003 * 119.99643 * 0.02562 * 7 6 5 40 40 H 1.08999 * 109.61502 * 59.78074 * 10 8 7 41 41 H 1.09000 * 109.52500 * 303.05487 * 11 10 8 42 42 H 1.09005 * 109.52290 * 63.24933 * 11 10 8 43 43 H 1.09007 * 109.48065 * 297.62730 * 12 11 10 44 44 H 1.09003 * 109.48182 * 177.59537 * 12 11 10 45 45 H 1.09002 * 109.47909 * 301.17373 * 14 13 12 46 46 H 1.08997 * 109.48625 * 181.14529 * 14 13 12 47 47 H 1.08993 * 109.51901 * 182.48485 * 15 14 13 48 48 H 1.08999 * 109.51827 * 62.29968 * 15 14 13 49 49 H 1.08998 * 109.47609 * 186.05151 * 16 4 3 50 50 H 1.09007 * 109.46825 * 306.04709 * 16 4 3 51 51 H 0.97000 * 120.00692 * 359.97438 * 19 17 16 52 52 H 0.96997 * 120.00000 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5037 1.4444 0.1234 5 6 4.1397 1.0744 -1.1482 6 6 5.5751 0.6147 -0.8857 7 7 6.1690 0.1309 -2.1345 8 6 7.4363 -0.3278 -2.1446 9 8 8.0851 -0.3397 -1.1201 10 6 8.0470 -0.8259 -3.4292 11 6 7.2312 -2.0089 -3.9595 12 6 7.9033 -2.5578 -5.2207 13 8 9.2462 -2.9395 -4.9155 14 6 10.0693 -1.8639 -4.4599 15 6 9.4841 -1.2872 -3.1681 16 6 3.9906 2.7473 0.5960 17 6 3.5117 2.9812 2.0056 18 8 2.8321 2.1447 2.5619 19 7 3.8386 4.1200 2.6480 20 6 3.4033 4.3327 3.9306 21 1 2.7982 3.5878 4.4260 22 6 3.7407 5.5065 4.5931 23 7 3.3231 5.7105 5.8223 24 14 4.7868 6.7952 3.7361 25 1 3.9056 7.7484 3.0150 26 1 5.5911 7.5306 4.7448 27 1 5.6953 6.1309 2.7673 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8932 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6038 1.9821 0.8406 34 1 1.7533 1.9292 -0.9322 35 1 4.1506 1.9377 -1.8136 36 1 3.5779 0.2643 -1.6132 37 1 5.5702 -0.1897 -0.1502 38 1 6.1608 1.4514 -0.5050 39 1 5.6502 0.1408 -2.9540 40 1 8.0498 -0.0245 -4.1679 41 1 7.1871 -2.7903 -3.2008 42 1 6.2214 -1.6762 -4.2003 43 1 7.9107 -1.7884 -5.9929 44 1 7.3507 -3.4266 -5.5784 45 1 10.1051 -1.0855 -5.2221 46 1 11.0772 -2.2328 -4.2695 47 1 10.0857 -0.4384 -2.8429 48 1 9.4856 -2.0540 -2.3935 49 1 5.0803 2.7570 0.5761 50 1 3.6084 3.5352 -0.0531 51 1 4.3824 4.7889 2.2033 52 1 3.5584 6.5301 6.2847 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266554202.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:16:31 Heat of formation + Delta-G solvation = -122.910843 kcal Electronic energy + Delta-G solvation = -30086.854411 eV Core-core repulsion = 25893.136427 eV Total energy + Delta-G solvation = -4193.717984 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.62049 -39.16864 -38.75811 -37.12574 -35.03574 -34.14421 -33.90113 -33.02919 -31.65198 -31.54950 -29.51477 -27.73578 -26.28254 -24.88868 -24.04790 -23.67400 -21.97438 -21.48708 -20.75188 -20.07209 -19.35189 -18.30849 -17.69799 -16.70862 -16.46819 -16.18525 -16.00314 -15.79792 -15.27596 -15.11819 -15.02293 -14.76322 -14.61096 -14.34850 -14.11491 -13.72247 -13.58208 -13.38613 -13.20602 -13.02143 -12.81146 -12.57353 -12.36563 -12.02889 -11.95448 -11.83294 -11.78123 -11.66624 -11.54653 -11.26769 -11.19555 -11.02797 -10.91659 -10.69282 -10.59542 -10.36424 -10.28444 -9.97170 -9.79997 -9.52334 -9.24741 -8.56714 -8.17859 -8.06118 -6.30516 -3.81774 2.40204 2.81786 3.03376 3.06551 3.15393 3.43515 3.73307 3.91668 4.10710 4.14269 4.26155 4.31315 4.51480 4.62685 4.72389 4.78486 4.84055 4.95004 4.96951 5.07546 5.12544 5.14883 5.20569 5.21868 5.29168 5.30935 5.36473 5.52670 5.53496 5.56676 5.58937 5.64182 5.75897 5.78001 5.86249 5.87293 5.95364 5.98092 6.03479 6.19902 6.24840 6.46091 6.51842 6.73090 7.12696 7.19268 7.27740 7.58741 7.99859 8.14865 8.60560 8.95765 9.42996 9.83521 10.82583 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.011713 B = 0.002267 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2389.879242 B =12347.084553 C =14283.947354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.112 4.112 3 C 0.057 3.943 4 N -0.512 5.512 5 C 0.045 3.955 6 C 0.120 3.880 7 N -0.729 5.729 8 C 0.516 3.484 9 O -0.532 6.532 10 C -0.109 4.109 11 C -0.148 4.148 12 C 0.063 3.937 13 O -0.383 6.383 14 C 0.061 3.939 15 C -0.137 4.137 16 C 0.039 3.961 17 C 0.452 3.548 18 O -0.556 6.556 19 N -0.591 5.591 20 C -0.303 4.303 21 H 0.120 0.880 22 C 0.041 3.959 23 N -0.881 5.881 24 Si 0.879 3.121 25 H -0.272 1.272 26 H -0.276 1.276 27 H -0.269 1.269 28 H 0.059 0.941 29 H 0.047 0.953 30 H 0.051 0.949 31 H 0.049 0.951 32 H 0.075 0.925 33 H 0.098 0.902 34 H 0.023 0.977 35 H 0.038 0.962 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.068 0.932 39 H 0.397 0.603 40 H 0.097 0.903 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.052 0.948 44 H 0.098 0.902 45 H 0.051 0.949 46 H 0.098 0.902 47 H 0.081 0.919 48 H 0.082 0.918 49 H 0.090 0.910 50 H 0.049 0.951 51 H 0.370 0.630 52 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.746 -11.487 -26.821 29.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.150 4.150 3 C -0.070 4.070 4 N -0.236 5.236 5 C -0.084 4.084 6 C -0.004 4.004 7 N -0.381 5.381 8 C 0.302 3.698 9 O -0.408 6.408 10 C -0.130 4.130 11 C -0.186 4.186 12 C -0.014 4.014 13 O -0.301 6.301 14 C -0.016 4.016 15 C -0.175 4.175 16 C -0.092 4.092 17 C 0.238 3.762 18 O -0.438 6.438 19 N -0.231 5.231 20 C -0.432 4.432 21 H 0.138 0.862 22 C -0.162 4.162 23 N -0.521 5.521 24 Si 0.705 3.295 25 H -0.197 1.197 26 H -0.202 1.202 27 H -0.195 1.195 28 H 0.078 0.922 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.094 0.906 33 H 0.117 0.883 34 H 0.042 0.958 35 H 0.056 0.944 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.087 0.913 39 H 0.231 0.769 40 H 0.115 0.885 41 H 0.098 0.902 42 H 0.097 0.903 43 H 0.071 0.929 44 H 0.116 0.884 45 H 0.069 0.931 46 H 0.116 0.884 47 H 0.100 0.900 48 H 0.101 0.899 49 H 0.108 0.892 50 H 0.067 0.933 51 H 0.202 0.798 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.928 -12.451 -25.131 28.889 hybrid contribution 0.253 2.255 -1.421 2.677 sum 7.181 -10.196 -26.552 29.335 Atomic orbital electron populations 1.21720 0.95997 1.01265 1.01768 1.21424 0.95008 0.96559 1.02016 1.22269 0.86162 0.97791 1.00827 1.61399 1.06720 1.29109 1.26396 1.22262 0.94456 1.00150 0.91530 1.21368 0.92817 1.00404 0.85809 1.45950 1.14322 1.65411 1.12423 1.20498 0.81452 0.77269 0.90585 1.90747 1.61119 1.54431 1.34462 1.21383 0.96919 0.98954 0.95790 1.22215 0.99165 0.97766 0.99449 1.22576 0.83194 1.00605 0.95060 1.87961 1.21587 1.34616 1.85952 1.22645 0.94682 0.89902 0.94379 1.22034 0.94040 1.02551 0.98893 1.21983 1.00957 0.90219 0.96041 1.19588 0.85634 0.83415 0.87575 1.90552 1.40982 1.44367 1.67866 1.42224 1.48374 1.17495 1.15024 1.19418 1.30828 1.05071 0.87867 0.86243 1.25034 0.97872 0.97545 0.95730 1.69618 1.45038 1.26710 1.10763 0.86686 0.80737 0.82267 0.79797 1.19707 1.20160 1.19480 0.92206 0.93399 0.92947 0.93237 0.90625 0.88333 0.95847 0.94357 0.90114 0.90081 0.91346 0.76902 0.88460 0.90158 0.90266 0.92924 0.88429 0.93068 0.88382 0.89996 0.89948 0.89195 0.93290 0.79777 0.91633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.91 37.16 0.37 -1.38 16 2 C -0.11 -1.47 5.98 -26.73 -0.16 -1.63 16 3 C 0.06 0.84 4.46 -3.82 -0.02 0.82 16 4 N -0.51 -7.69 4.10 -236.07 -0.97 -8.66 16 5 C 0.04 0.48 4.92 -3.82 -0.02 0.46 16 6 C 0.12 1.39 5.70 -4.05 -0.02 1.37 16 7 N -0.73 -6.45 5.46 -60.30 -0.33 -6.78 16 8 C 0.52 5.52 7.16 -10.98 -0.08 5.45 16 9 O -0.53 -8.25 15.97 5.56 0.09 -8.16 16 10 C -0.11 -0.78 2.61 -91.59 -0.24 -1.02 16 11 C -0.15 -0.85 5.30 -26.59 -0.14 -0.99 16 12 C 0.06 0.34 6.84 37.21 0.25 0.60 16 13 O -0.38 -3.11 10.77 -35.23 -0.38 -3.49 16 14 C 0.06 0.39 6.84 37.21 0.25 0.65 16 15 C -0.14 -1.10 4.73 -26.59 -0.13 -1.22 16 16 C 0.04 0.65 5.28 -4.98 -0.03 0.62 16 17 C 0.45 10.13 7.29 -10.98 -0.08 10.05 16 18 O -0.56 -14.52 14.12 5.55 0.08 -14.44 16 19 N -0.59 -14.05 5.09 -10.96 -0.06 -14.11 16 20 C -0.30 -8.55 10.16 -14.93 -0.15 -8.71 16 21 H 0.12 3.85 7.39 -52.48 -0.39 3.46 16 22 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 23 N -0.88 -25.82 13.96 55.50 0.77 -25.04 16 24 Si 0.88 19.48 27.74 -169.99 -4.71 14.76 16 25 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 26 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 27 H -0.27 -5.48 6.52 56.52 0.37 -5.11 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.55 6.91 -51.93 -0.36 0.19 16 32 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 33 H 0.10 1.82 5.85 -51.93 -0.30 1.52 16 34 H 0.02 0.30 7.99 -51.93 -0.42 -0.12 16 35 H 0.04 0.36 8.00 -51.93 -0.42 -0.05 16 36 H 0.08 0.75 6.58 -51.93 -0.34 0.41 16 37 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.07 0.90 6.95 -51.93 -0.36 0.54 16 39 H 0.40 2.20 7.99 -40.82 -0.33 1.87 16 40 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.08 0.29 7.70 -51.93 -0.40 -0.11 16 43 H 0.05 0.22 8.14 -51.93 -0.42 -0.21 16 44 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 46 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 47 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.08 0.82 8.02 -51.93 -0.42 0.40 16 49 H 0.09 1.35 6.71 -51.93 -0.35 1.00 16 50 H 0.05 0.70 8.12 -51.93 -0.42 0.28 16 51 H 0.37 7.76 5.76 -40.82 -0.24 7.52 16 52 H 0.27 7.39 8.31 -40.82 -0.34 7.06 16 LS Contribution 410.62 15.07 6.19 6.19 Total: -1.00 -35.15 410.62 -8.57 -43.73 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: -8.97 Total: 9.90 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: -0.28 Total: 6.10 kcal Atomic # 7 Polarization: -54.01 SS G_CDS: -0.58 Total: -54.59 kcal Atomic # 8 Polarization: -25.87 SS G_CDS: -0.21 Total: -26.09 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -4.71 Total: 14.76 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -35.15 -8.57 -43.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266554202.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.186 kcal (2) G-P(sol) polarization free energy of solvation -35.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds