Wall clock time and date at job start Wed Apr 1 2020 01:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46839 * 2 1 4 4 N 1.46900 * 109.47021 * 174.88970 * 3 2 1 5 5 C 1.46905 * 110.99909 * 76.02128 * 4 3 2 6 6 C 1.52994 * 109.47298 * 199.54404 * 5 4 3 7 7 N 1.46499 * 109.47405 * 174.89045 * 6 5 4 8 8 C 1.34772 * 119.99944 * 180.02562 * 7 6 5 9 9 O 1.21276 * 120.00509 * 359.97438 * 8 7 6 10 10 C 1.50706 * 119.99831 * 179.97438 * 8 7 6 11 11 C 1.53172 * 109.54261 * 299.55684 * 10 8 7 12 12 C 1.53096 * 109.16440 * 183.15223 * 11 10 8 13 13 O 1.42902 * 109.41436 * 57.60545 * 12 11 10 14 14 C 1.42905 * 114.09993 * 298.84687 * 13 12 11 15 15 C 1.53093 * 109.41456 * 61.15365 * 14 13 12 16 16 C 1.46895 * 111.00282 * 199.97793 * 4 3 2 17 17 C 1.50705 * 109.47048 * 66.04398 * 16 4 3 18 18 O 1.21285 * 119.99979 * 0.02562 * 17 16 4 19 19 N 1.34775 * 119.99642 * 180.02562 * 17 16 4 20 20 C 1.37102 * 119.99690 * 180.02562 * 19 17 16 21 21 H 1.08004 * 119.99735 * 359.97438 * 20 19 17 22 22 C 1.38946 * 119.99975 * 179.97438 * 20 19 17 23 23 N 1.31409 * 119.99990 * 179.97438 * 22 20 19 24 24 Si 1.86802 * 120.00221 * 0.02562 * 22 20 19 25 25 H 1.48503 * 109.47212 * 89.99452 * 24 22 20 26 26 H 1.48496 * 109.47266 * 209.99931 * 24 22 20 27 27 H 1.48501 * 109.46710 * 329.99595 * 24 22 20 28 28 H 1.09000 * 109.47346 * 300.00264 * 1 2 3 29 29 H 1.09006 * 109.47296 * 60.00193 * 1 2 3 30 30 H 1.09001 * 109.47155 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46694 * 240.00073 * 2 1 3 32 32 H 1.08996 * 109.47249 * 119.99921 * 2 1 3 33 33 H 1.08996 * 109.47398 * 54.88901 * 3 2 1 34 34 H 1.08997 * 109.47240 * 294.88596 * 3 2 1 35 35 H 1.09004 * 109.46405 * 79.54609 * 5 4 3 36 36 H 1.09004 * 109.47242 * 319.54990 * 5 4 3 37 37 H 1.08999 * 109.46929 * 54.88773 * 6 5 4 38 38 H 1.09001 * 109.47353 * 294.89327 * 6 5 4 39 39 H 0.97003 * 119.99643 * 0.02562 * 7 6 5 40 40 H 1.08999 * 109.61502 * 59.78074 * 10 8 7 41 41 H 1.09000 * 109.52500 * 303.05487 * 11 10 8 42 42 H 1.09005 * 109.52290 * 63.24933 * 11 10 8 43 43 H 1.09007 * 109.48065 * 297.62730 * 12 11 10 44 44 H 1.09003 * 109.48182 * 177.59537 * 12 11 10 45 45 H 1.09002 * 109.47909 * 301.17373 * 14 13 12 46 46 H 1.08997 * 109.48625 * 181.14529 * 14 13 12 47 47 H 1.08993 * 109.51901 * 182.48485 * 15 14 13 48 48 H 1.08999 * 109.51827 * 62.29968 * 15 14 13 49 49 H 1.08998 * 109.47609 * 186.05151 * 16 4 3 50 50 H 1.09007 * 109.46825 * 306.04709 * 16 4 3 51 51 H 0.97000 * 120.00692 * 359.97438 * 19 17 16 52 52 H 0.96997 * 120.00000 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5037 1.4444 0.1234 5 6 4.1397 1.0744 -1.1482 6 6 5.5751 0.6147 -0.8857 7 7 6.1690 0.1309 -2.1345 8 6 7.4363 -0.3278 -2.1446 9 8 8.0851 -0.3397 -1.1201 10 6 8.0470 -0.8259 -3.4292 11 6 7.2312 -2.0089 -3.9595 12 6 7.9033 -2.5578 -5.2207 13 8 9.2462 -2.9395 -4.9155 14 6 10.0693 -1.8639 -4.4599 15 6 9.4841 -1.2872 -3.1681 16 6 3.9906 2.7473 0.5960 17 6 3.5117 2.9812 2.0056 18 8 2.8321 2.1447 2.5619 19 7 3.8386 4.1200 2.6480 20 6 3.4033 4.3327 3.9306 21 1 2.7982 3.5878 4.4260 22 6 3.7407 5.5065 4.5931 23 7 3.3231 5.7105 5.8223 24 14 4.7868 6.7952 3.7361 25 1 3.9056 7.7484 3.0150 26 1 5.5911 7.5306 4.7448 27 1 5.6953 6.1309 2.7673 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8932 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6038 1.9821 0.8406 34 1 1.7533 1.9292 -0.9322 35 1 4.1506 1.9377 -1.8136 36 1 3.5779 0.2643 -1.6132 37 1 5.5702 -0.1897 -0.1502 38 1 6.1608 1.4514 -0.5050 39 1 5.6502 0.1408 -2.9540 40 1 8.0498 -0.0245 -4.1679 41 1 7.1871 -2.7903 -3.2008 42 1 6.2214 -1.6762 -4.2003 43 1 7.9107 -1.7884 -5.9929 44 1 7.3507 -3.4266 -5.5784 45 1 10.1051 -1.0855 -5.2221 46 1 11.0772 -2.2328 -4.2695 47 1 10.0857 -0.4384 -2.8429 48 1 9.4856 -2.0540 -2.3935 49 1 5.0803 2.7570 0.5761 50 1 3.6084 3.5352 -0.0531 51 1 4.3824 4.7889 2.2033 52 1 3.5584 6.5301 6.2847 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266554202.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:16:30 Heat of formation + Delta-G solvation = -151.769982 kcal Electronic energy + Delta-G solvation = -30088.105837 eV Core-core repulsion = 25893.136427 eV Total energy + Delta-G solvation = -4194.969410 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.35516 -40.61231 -39.56447 -38.49052 -36.11683 -35.78578 -34.76899 -34.10300 -33.69226 -32.04181 -30.55398 -29.04853 -26.97097 -26.54253 -24.98975 -24.40692 -22.99956 -22.24287 -21.78278 -21.23734 -20.78846 -20.19255 -18.43420 -17.87925 -17.36775 -17.04229 -16.91411 -16.83342 -16.57769 -16.29120 -15.91195 -15.85734 -15.61315 -15.46763 -15.05896 -14.99370 -14.72801 -14.56021 -14.39647 -14.23289 -13.97338 -13.72900 -13.55825 -13.26370 -13.12013 -12.85179 -12.70272 -12.53838 -12.48717 -12.42489 -12.29570 -12.15951 -11.99939 -11.77011 -11.68714 -11.54408 -11.45852 -11.34992 -10.97323 -10.45071 -10.35300 -10.22541 -10.12103 -9.23698 -8.41684 -6.01994 1.28596 1.33443 1.42507 1.59051 1.96012 2.00479 2.21749 2.70697 3.01278 3.14503 3.20047 3.56628 3.71744 3.78735 3.87026 4.01090 4.02868 4.05970 4.16302 4.25677 4.29040 4.31111 4.38136 4.43149 4.52309 4.53118 4.55230 4.62197 4.65007 4.69590 4.78688 4.82026 4.85448 4.95536 4.95984 5.00833 5.10245 5.12628 5.21685 5.26697 5.38390 5.42244 5.43358 5.53595 5.90005 6.03571 6.19767 6.29898 6.53773 6.59590 6.88581 7.24808 7.39930 7.97433 8.76025 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.011713 B = 0.002267 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2389.879242 B =12347.084553 C =14283.947354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.107 4.107 3 C 0.060 3.940 4 N -0.539 5.539 5 C 0.055 3.945 6 C 0.126 3.874 7 N -0.710 5.710 8 C 0.512 3.488 9 O -0.589 6.589 10 C -0.101 4.101 11 C -0.143 4.143 12 C 0.058 3.942 13 O -0.408 6.408 14 C 0.064 3.936 15 C -0.138 4.138 16 C 0.052 3.948 17 C 0.451 3.549 18 O -0.601 6.601 19 N -0.595 5.595 20 C -0.324 4.324 21 H 0.055 0.945 22 C -0.017 4.017 23 N -0.935 5.935 24 Si 0.964 3.036 25 H -0.254 1.254 26 H -0.276 1.276 27 H -0.234 1.234 28 H 0.033 0.967 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.040 0.960 33 H 0.051 0.949 34 H 0.054 0.946 35 H 0.069 0.931 36 H 0.103 0.897 37 H 0.048 0.952 38 H 0.053 0.947 39 H 0.419 0.581 40 H 0.130 0.870 41 H 0.056 0.944 42 H 0.108 0.892 43 H 0.076 0.924 44 H 0.108 0.892 45 H 0.073 0.927 46 H 0.101 0.899 47 H 0.075 0.925 48 H 0.051 0.949 49 H 0.109 0.891 50 H 0.084 0.916 51 H 0.388 0.612 52 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.612 -10.314 -32.320 34.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.145 4.145 3 C -0.067 4.067 4 N -0.264 5.264 5 C -0.073 4.073 6 C 0.001 3.999 7 N -0.363 5.363 8 C 0.299 3.701 9 O -0.469 6.469 10 C -0.122 4.122 11 C -0.181 4.181 12 C -0.018 4.018 13 O -0.327 6.327 14 C -0.013 4.013 15 C -0.176 4.176 16 C -0.079 4.079 17 C 0.238 3.762 18 O -0.485 6.485 19 N -0.237 5.237 20 C -0.454 4.454 21 H 0.073 0.927 22 C -0.215 4.215 23 N -0.576 5.576 24 Si 0.784 3.216 25 H -0.179 1.179 26 H -0.201 1.201 27 H -0.158 1.158 28 H 0.052 0.948 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.087 0.913 36 H 0.121 0.879 37 H 0.067 0.933 38 H 0.071 0.929 39 H 0.256 0.744 40 H 0.148 0.852 41 H 0.075 0.925 42 H 0.126 0.874 43 H 0.094 0.906 44 H 0.126 0.874 45 H 0.092 0.908 46 H 0.119 0.881 47 H 0.094 0.906 48 H 0.070 0.930 49 H 0.127 0.873 50 H 0.102 0.898 51 H 0.223 0.777 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.765 -11.299 -30.703 33.625 hybrid contribution -0.105 1.731 0.341 1.768 sum 7.659 -9.568 -30.362 32.742 Atomic orbital electron populations 1.21698 0.95042 1.02167 1.01518 1.21385 0.95845 0.95566 1.01739 1.22162 0.85972 0.98368 1.00202 1.61281 1.07120 1.28517 1.29486 1.22261 0.93232 1.01968 0.89822 1.21123 0.93635 0.98759 0.86361 1.45729 1.13890 1.64260 1.12399 1.21199 0.81503 0.76283 0.91072 1.90729 1.62623 1.56780 1.36761 1.21414 0.96007 1.00379 0.94416 1.22221 1.00504 0.96406 0.98973 1.22778 0.81994 1.01847 0.95184 1.87933 1.22987 1.35745 1.86034 1.22677 0.94531 0.90145 0.93898 1.22005 0.95103 1.01469 0.99028 1.21875 1.01923 0.92264 0.91810 1.20884 0.83639 0.81919 0.89729 1.90540 1.42517 1.45726 1.69685 1.42066 1.49215 1.18781 1.13631 1.18979 1.31647 1.04606 0.90133 0.92662 1.26103 0.99106 0.99968 0.96344 1.69803 1.46799 1.27945 1.13040 0.85381 0.78886 0.78286 0.79077 1.17871 1.20125 1.15792 0.94801 0.91258 0.91508 0.90152 0.94115 0.93035 0.92758 0.91272 0.87873 0.93345 0.92862 0.74377 0.85218 0.92528 0.87389 0.90631 0.87375 0.90837 0.88135 0.90644 0.93024 0.87256 0.89833 0.77670 0.91210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 9.91 71.98 0.71 -2.54 16 2 C -0.11 -2.69 5.98 30.59 0.18 -2.50 16 3 C 0.06 1.69 4.46 86.30 0.39 2.08 16 4 N -0.54 -15.19 4.10 -900.79 -3.69 -18.88 16 5 C 0.05 0.96 4.92 86.30 0.42 1.39 16 6 C 0.13 2.68 5.70 86.38 0.49 3.17 16 7 N -0.71 -10.49 5.46 -463.08 -2.53 -13.02 16 8 C 0.51 10.22 7.16 87.66 0.63 10.85 16 9 O -0.59 -18.61 15.97 -3.02 -0.05 -18.66 16 10 C -0.10 -1.20 2.61 -11.42 -0.03 -1.23 16 11 C -0.14 -1.24 5.30 30.68 0.16 -1.07 16 12 C 0.06 0.45 6.84 72.01 0.49 0.94 16 13 O -0.41 -5.86 10.77 -148.98 -1.60 -7.46 16 14 C 0.06 0.72 6.84 72.01 0.49 1.21 16 15 C -0.14 -2.12 4.73 30.68 0.15 -1.97 16 16 C 0.05 1.60 5.28 85.56 0.45 2.05 16 17 C 0.45 20.52 7.29 87.66 0.64 21.16 16 18 O -0.60 -33.28 14.12 -3.05 -0.04 -33.32 16 19 N -0.59 -28.51 5.09 -306.99 -1.56 -30.08 16 20 C -0.32 -19.27 10.16 84.04 0.85 -18.41 16 21 H 0.06 3.90 7.39 -2.91 -0.02 3.88 16 22 C -0.02 -0.95 5.50 84.93 0.47 -0.48 16 23 N -0.93 -57.19 13.96 21.66 0.30 -56.88 16 24 Si 0.96 39.53 27.74 68.60 1.90 41.44 16 25 H -0.25 -9.76 7.11 99.48 0.71 -9.05 16 26 H -0.28 -11.30 7.11 99.48 0.71 -10.59 16 27 H -0.23 -8.22 6.52 99.48 0.65 -7.57 16 28 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.07 1.24 8.14 -2.38 -0.02 1.23 16 30 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.08 1.50 6.91 -2.39 -0.02 1.49 16 32 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.05 1.95 5.85 -2.39 -0.01 1.94 16 34 H 0.05 1.18 7.99 -2.39 -0.02 1.16 16 35 H 0.07 0.88 8.00 -2.38 -0.02 0.86 16 36 H 0.10 1.39 6.58 -2.38 -0.02 1.37 16 37 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.05 1.31 6.95 -2.39 -0.02 1.29 16 39 H 0.42 2.62 7.99 -92.71 -0.74 1.87 16 40 H 0.13 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.06 0.77 8.14 -2.39 -0.02 0.76 16 42 H 0.11 0.30 7.70 -2.38 -0.02 0.28 16 43 H 0.08 0.27 8.14 -2.38 -0.02 0.25 16 44 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 45 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 46 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 47 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 48 H 0.05 1.09 8.02 -2.39 -0.02 1.07 16 49 H 0.11 2.97 6.71 -2.39 -0.02 2.96 16 50 H 0.08 2.03 8.12 -2.38 -0.02 2.01 16 51 H 0.39 15.49 5.76 -92.71 -0.53 14.96 16 52 H 0.28 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -87.30 410.62 -1.19 -88.49 By element: Atomic # 1 Polarization: 34.15 SS G_CDS: -0.41 Total: 33.74 kcal Atomic # 6 Polarization: 8.14 SS G_CDS: 6.50 Total: 14.64 kcal Atomic # 7 Polarization: -111.38 SS G_CDS: -7.49 Total: -118.86 kcal Atomic # 8 Polarization: -57.75 SS G_CDS: -1.70 Total: -59.45 kcal Atomic # 14 Polarization: 39.53 SS G_CDS: 1.90 Total: 41.44 kcal Total: -87.30 -1.19 -88.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266554202.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.278 kcal (2) G-P(sol) polarization free energy of solvation -87.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds