Wall clock time and date at job start Wed Apr 1 2020 00:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47476 * 2 1 4 4 H 1.08998 * 109.47343 * 54.99939 * 3 2 1 5 5 O 1.42899 * 109.46942 * 294.99886 * 3 2 1 6 6 C 1.42905 * 113.99778 * 149.99763 * 5 3 2 7 7 C 1.50698 * 109.47287 * 175.00194 * 3 2 1 8 8 O 1.21281 * 120.00223 * 114.99476 * 7 3 2 9 9 N 1.34786 * 119.99970 * 295.00084 * 7 3 2 10 10 C 1.46928 * 120.62770 * 359.97438 * 9 7 3 11 11 C 1.53183 * 108.77688 * 233.58994 * 10 9 7 12 12 C 1.53043 * 109.31209 * 305.36838 * 11 10 9 13 13 C 1.53033 * 109.53931 * 61.36645 * 12 11 10 14 14 H 1.08999 * 109.50113 * 58.62201 * 13 12 11 15 15 C 1.53006 * 109.50166 * 178.68410 * 13 12 11 16 16 N 1.46894 * 109.47062 * 295.00261 * 15 13 12 17 17 C 1.46893 * 111.00228 * 179.97438 * 16 15 13 18 18 C 1.50701 * 109.47666 * 179.97438 * 17 16 15 19 19 O 1.21297 * 119.99734 * 359.97438 * 18 17 16 20 20 N 1.34778 * 120.00513 * 179.97438 * 18 17 16 21 21 C 1.37091 * 119.99965 * 179.97438 * 20 18 17 22 22 H 1.08000 * 120.00541 * 0.02562 * 21 20 18 23 23 C 1.38951 * 120.00095 * 179.97438 * 21 20 18 24 24 N 1.31411 * 120.00340 * 179.97438 * 23 21 20 25 25 Si 1.86801 * 119.99617 * 0.02562 * 23 21 20 26 26 H 1.48500 * 109.47320 * 89.99734 * 25 23 21 27 27 H 1.48504 * 109.47233 * 209.99822 * 25 23 21 28 28 H 1.48504 * 109.47349 * 329.99403 * 25 23 21 29 29 C 1.46924 * 120.62917 * 179.72070 * 9 7 3 30 30 H 1.08995 * 109.46834 * 59.99694 * 1 2 3 31 31 H 1.08993 * 109.47393 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.46478 * 300.00240 * 1 2 3 33 33 H 1.09003 * 109.47194 * 239.99609 * 2 1 3 34 34 H 1.09005 * 109.47323 * 120.00040 * 2 1 3 35 35 H 1.09000 * 109.47187 * 300.00233 * 6 5 3 36 36 H 1.09001 * 109.46558 * 60.00281 * 6 5 3 37 37 H 1.09001 * 109.47103 * 179.97438 * 6 5 3 38 38 H 1.08996 * 109.58517 * 353.38074 * 10 9 7 39 39 H 1.09005 * 109.58106 * 113.80286 * 10 9 7 40 40 H 1.08992 * 109.50025 * 65.31516 * 11 10 9 41 41 H 1.09000 * 109.49902 * 185.41737 * 11 10 9 42 42 H 1.09002 * 109.46240 * 181.38790 * 12 11 10 43 43 H 1.09007 * 109.46339 * 301.35690 * 12 11 10 44 44 H 1.09003 * 109.46658 * 54.99840 * 15 13 12 45 45 H 1.08994 * 109.47325 * 174.99543 * 15 13 12 46 46 H 1.00903 * 110.99940 * 303.94966 * 16 15 13 47 47 H 1.09001 * 109.47188 * 299.99732 * 17 16 15 48 48 H 1.08999 * 109.47390 * 59.99553 * 17 16 15 49 49 H 0.96997 * 119.99712 * 359.97438 * 20 18 17 50 50 H 0.96996 * 120.00190 * 179.97438 * 24 23 21 51 51 H 1.08999 * 109.58524 * 246.19629 * 29 9 7 52 52 H 1.08999 * 109.58691 * 6.62772 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 8 1.6621 2.0813 -1.2211 6 6 1.4561 3.4903 -1.1003 7 6 3.5420 1.4442 0.1238 8 8 4.2251 1.8609 -0.7876 9 7 4.1261 0.9826 1.2474 10 6 3.3119 0.4751 2.3601 11 6 3.7159 1.2100 3.6420 12 6 5.2253 1.0688 3.8520 13 6 5.9676 1.7064 2.6754 14 1 5.6891 2.7572 2.5958 15 6 7.4766 1.5939 2.9021 16 7 7.8558 2.3893 4.0774 17 6 9.3009 2.3044 4.3266 18 6 9.6516 3.1315 5.5366 19 8 8.7830 3.7330 6.1325 20 7 10.9303 3.2029 5.9566 21 6 11.2492 3.9557 7.0570 22 1 10.4759 4.4913 7.5876 23 6 12.5674 4.0289 7.4905 24 7 12.8733 4.7510 8.5450 25 14 13.9049 3.1021 6.5732 26 1 14.4677 3.9705 5.5081 27 1 14.9822 2.7205 7.5215 28 1 13.3282 1.8782 5.9608 29 6 5.5893 0.9722 1.3804 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3632 0.5139 0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 0.6620 3.6808 -0.3783 36 1 2.3771 3.9643 -0.7610 37 1 1.1725 3.9004 -2.0696 38 1 2.2571 0.6549 2.1527 39 1 3.4854 -0.5942 2.4817 40 1 3.4582 2.2653 3.5529 41 1 3.1883 0.7765 4.4916 42 1 5.5117 1.5701 4.7766 43 1 5.4859 0.0123 3.9160 44 1 7.7420 0.5499 3.0689 45 1 8.0047 1.9673 2.0248 46 1 7.5621 3.3491 3.9745 47 1 9.5787 1.2653 4.5035 48 1 9.8421 2.6825 3.4593 49 1 11.6248 2.7216 5.4803 50 1 13.7934 4.8018 8.8477 51 1 5.9450 -0.0572 1.4237 52 1 6.0374 1.4803 0.5265 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266778277.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:51:40 Heat of formation + Delta-G solvation = -116.921170 kcal Electronic energy + Delta-G solvation = -30177.190271 eV Core-core repulsion = 25983.732019 eV Total energy + Delta-G solvation = -4193.458252 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.90344 -38.82968 -38.35033 -37.35269 -35.80494 -34.30387 -33.88265 -32.68655 -31.78259 -31.58264 -28.62376 -27.51833 -26.56978 -25.56833 -24.71649 -23.21504 -22.68970 -22.01767 -20.62505 -19.57326 -19.34593 -18.33271 -17.97081 -17.13435 -16.37147 -15.96765 -15.76455 -15.67394 -15.31022 -15.02820 -14.88567 -14.69316 -14.45337 -14.38125 -14.05466 -13.90281 -13.57309 -13.44156 -13.21244 -13.16251 -12.82038 -12.75733 -12.47290 -12.37763 -12.05455 -12.01888 -11.87116 -11.70859 -11.55865 -11.38886 -11.26157 -11.17352 -10.97864 -10.90425 -10.75169 -10.61710 -10.59298 -9.98302 -9.57930 -9.55459 -8.95113 -8.59692 -8.20249 -8.13470 -6.31798 -3.83235 2.25030 2.52117 3.02253 3.06316 3.14620 3.32254 3.73693 3.98453 4.07127 4.10723 4.32135 4.35970 4.44687 4.59621 4.63942 4.75168 4.77930 4.87033 4.90957 4.97676 4.98452 5.05604 5.07321 5.18088 5.21134 5.25300 5.35211 5.38468 5.42759 5.45548 5.46084 5.54226 5.58123 5.63791 5.66242 5.79191 5.79774 5.83073 5.87964 5.93521 6.11927 6.22320 6.31320 6.58547 7.04395 7.08147 7.55117 7.57961 7.84863 8.13806 8.59166 8.94290 9.41837 9.82126 10.81317 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.026734 B = 0.001758 C = 0.001740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.116831 B =15920.151075 C =16092.523408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C 0.075 3.925 4 H 0.086 0.914 5 O -0.357 6.357 6 C 0.029 3.971 7 C 0.491 3.509 8 O -0.527 6.527 9 N -0.608 5.608 10 C 0.099 3.901 11 C -0.138 4.138 12 C -0.109 4.109 13 C -0.096 4.096 14 H 0.074 0.926 15 C 0.065 3.935 16 N -0.666 5.666 17 C 0.048 3.952 18 C 0.450 3.550 19 O -0.565 6.565 20 N -0.591 5.591 21 C -0.305 4.305 22 H 0.119 0.881 23 C 0.041 3.959 24 N -0.881 5.881 25 Si 0.880 3.120 26 H -0.271 1.271 27 H -0.276 1.276 28 H -0.269 1.269 29 C 0.116 3.884 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.043 0.957 36 H 0.045 0.955 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.073 0.927 40 H 0.066 0.934 41 H 0.077 0.923 42 H 0.087 0.913 43 H 0.062 0.938 44 H 0.073 0.927 45 H 0.029 0.971 46 H 0.350 0.650 47 H 0.087 0.913 48 H 0.044 0.956 49 H 0.370 0.630 50 H 0.273 0.727 51 H 0.070 0.930 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.142 -11.984 -17.728 31.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C 0.014 3.986 4 H 0.104 0.896 5 O -0.273 6.273 6 C -0.068 4.068 7 C 0.278 3.722 8 O -0.402 6.402 9 N -0.343 5.343 10 C -0.023 4.023 11 C -0.176 4.176 12 C -0.147 4.147 13 C -0.116 4.116 14 H 0.092 0.908 15 C -0.065 4.065 16 N -0.298 5.298 17 C -0.085 4.085 18 C 0.236 3.764 19 O -0.447 6.447 20 N -0.230 5.230 21 C -0.434 4.434 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.521 5.521 25 Si 0.706 3.294 26 H -0.197 1.197 27 H -0.202 1.202 28 H -0.195 1.195 29 C -0.007 4.007 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.097 0.903 34 H 0.105 0.895 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.109 0.891 38 H 0.103 0.897 39 H 0.092 0.908 40 H 0.085 0.915 41 H 0.096 0.904 42 H 0.106 0.894 43 H 0.080 0.920 44 H 0.092 0.908 45 H 0.047 0.953 46 H 0.169 0.831 47 H 0.105 0.895 48 H 0.062 0.938 49 H 0.203 0.797 50 H 0.084 0.916 51 H 0.088 0.912 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -23.390 -11.843 -17.409 31.471 hybrid contribution 1.753 0.078 -0.963 2.002 sum -21.637 -11.765 -18.373 30.727 Atomic orbital electron populations 1.21727 0.94204 1.02242 1.02504 1.21781 0.97517 0.92912 1.04036 1.22100 0.90727 0.96541 0.89271 0.89620 1.87981 1.88023 1.21031 1.30313 1.22877 0.99867 0.81189 1.02847 1.21427 0.91346 0.77487 0.81939 1.90710 1.64981 1.45943 1.38573 1.48140 1.07260 1.62903 1.15999 1.22018 0.95117 0.98645 0.86559 1.21976 0.97865 1.01097 0.96642 1.21501 0.92822 1.01105 0.99243 1.21552 0.95101 1.00463 0.94480 0.90780 1.21918 0.94034 0.99106 0.91477 1.60038 1.13759 1.17371 1.38662 1.21698 0.89028 1.00933 0.96803 1.19719 0.83134 0.86112 0.87467 1.90562 1.47396 1.48278 1.58468 1.42208 1.07041 1.45439 1.28335 1.19430 0.95399 1.24678 1.03889 0.86295 1.25041 0.97272 0.97390 0.96470 1.69620 1.19670 1.39255 1.23591 0.86669 0.82446 0.80066 0.80184 1.19665 1.20159 1.19477 1.21712 0.79392 1.00934 0.98653 0.91697 0.92058 0.92654 0.90336 0.89481 0.93873 0.93628 0.89115 0.89653 0.90846 0.91520 0.90403 0.89401 0.91970 0.90831 0.95265 0.83060 0.89490 0.93788 0.79689 0.91614 0.91218 0.89084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.81 37.16 0.36 -0.35 16 2 C -0.12 -0.76 5.18 -26.73 -0.14 -0.90 16 3 C 0.08 0.61 1.68 -27.88 -0.05 0.57 16 4 H 0.09 0.53 7.08 -51.93 -0.37 0.16 16 5 O -0.36 -3.58 9.42 -55.09 -0.52 -4.10 16 6 C 0.03 0.22 10.81 101.05 1.09 1.31 16 7 C 0.49 5.35 7.07 -10.98 -0.08 5.28 16 8 O -0.53 -7.98 15.92 -14.30 -0.23 -8.21 16 9 N -0.61 -5.41 2.97 -172.52 -0.51 -5.92 16 10 C 0.10 0.60 4.89 -3.71 -0.02 0.58 16 11 C -0.14 -0.97 6.08 -26.61 -0.16 -1.13 16 12 C -0.11 -1.01 5.07 -26.69 -0.14 -1.15 16 13 C -0.10 -0.95 2.49 -90.29 -0.23 -1.18 16 14 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 15 C 0.06 0.72 5.08 -3.82 -0.02 0.70 16 16 N -0.67 -9.85 5.56 -115.07 -0.64 -10.49 16 17 C 0.05 0.78 6.17 -4.98 -0.03 0.75 16 18 C 0.45 10.14 7.82 -10.98 -0.09 10.06 16 19 O -0.57 -15.06 15.78 5.54 0.09 -14.97 16 20 N -0.59 -14.05 5.09 -10.96 -0.06 -14.11 16 21 C -0.31 -8.64 10.16 -14.94 -0.15 -8.80 16 22 H 0.12 3.85 7.39 -52.49 -0.39 3.46 16 23 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 24 N -0.88 -25.75 13.96 55.50 0.77 -24.98 16 25 Si 0.88 19.37 27.74 -169.99 -4.71 14.65 16 26 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 27 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 28 H -0.27 -5.40 6.52 56.52 0.37 -5.03 16 29 C 0.12 1.10 5.74 -3.50 -0.02 1.08 16 30 H 0.06 0.38 7.82 -51.93 -0.41 -0.03 16 31 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.09 0.39 5.43 -51.93 -0.28 0.11 16 35 H 0.04 0.24 8.08 -51.93 -0.42 -0.18 16 36 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.09 0.37 4.74 -51.93 -0.25 0.12 16 39 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.09 1.04 7.72 -51.93 -0.40 0.64 16 43 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 46 H 0.35 5.50 8.43 -39.29 -0.33 5.17 16 47 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 48 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 49 H 0.37 7.73 5.76 -40.82 -0.24 7.50 16 50 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 51 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 52 H 0.09 1.03 7.00 -51.93 -0.36 0.66 16 LS Contribution 410.62 15.07 6.19 6.19 Total: -1.00 -35.35 410.62 -8.32 -43.67 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: -8.95 Total: 10.40 kcal Atomic # 6 Polarization: 7.62 SS G_CDS: 0.25 Total: 7.87 kcal Atomic # 7 Polarization: -55.07 SS G_CDS: -0.43 Total: -55.50 kcal Atomic # 8 Polarization: -26.61 SS G_CDS: -0.66 Total: -27.27 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -4.71 Total: 14.65 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -35.35 -8.32 -43.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266778277.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.250 kcal (2) G-P(sol) polarization free energy of solvation -35.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds