Wall clock time and date at job start Wed Apr 1 2020 00:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47476 * 2 1 4 4 H 1.08998 * 109.47343 * 54.99939 * 3 2 1 5 5 O 1.42899 * 109.46942 * 294.99886 * 3 2 1 6 6 C 1.42905 * 113.99778 * 149.99763 * 5 3 2 7 7 C 1.50698 * 109.47287 * 175.00194 * 3 2 1 8 8 O 1.21281 * 120.00223 * 114.99476 * 7 3 2 9 9 N 1.34786 * 119.99970 * 295.00084 * 7 3 2 10 10 C 1.46928 * 120.62770 * 359.97438 * 9 7 3 11 11 C 1.53183 * 108.77688 * 233.58994 * 10 9 7 12 12 C 1.53043 * 109.31209 * 305.36838 * 11 10 9 13 13 C 1.53033 * 109.53931 * 61.36645 * 12 11 10 14 14 H 1.08999 * 109.50113 * 58.62201 * 13 12 11 15 15 C 1.53006 * 109.50166 * 178.68410 * 13 12 11 16 16 N 1.46894 * 109.47062 * 295.00261 * 15 13 12 17 17 C 1.46893 * 111.00228 * 179.97438 * 16 15 13 18 18 C 1.50701 * 109.47666 * 179.97438 * 17 16 15 19 19 O 1.21297 * 119.99734 * 359.97438 * 18 17 16 20 20 N 1.34778 * 120.00513 * 179.97438 * 18 17 16 21 21 C 1.37091 * 119.99965 * 179.97438 * 20 18 17 22 22 H 1.08000 * 120.00541 * 0.02562 * 21 20 18 23 23 C 1.38951 * 120.00095 * 179.97438 * 21 20 18 24 24 N 1.31411 * 120.00340 * 179.97438 * 23 21 20 25 25 Si 1.86801 * 119.99617 * 0.02562 * 23 21 20 26 26 H 1.48500 * 109.47320 * 89.99734 * 25 23 21 27 27 H 1.48504 * 109.47233 * 209.99822 * 25 23 21 28 28 H 1.48504 * 109.47349 * 329.99403 * 25 23 21 29 29 C 1.46924 * 120.62917 * 179.72070 * 9 7 3 30 30 H 1.08995 * 109.46834 * 59.99694 * 1 2 3 31 31 H 1.08993 * 109.47393 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.46478 * 300.00240 * 1 2 3 33 33 H 1.09003 * 109.47194 * 239.99609 * 2 1 3 34 34 H 1.09005 * 109.47323 * 120.00040 * 2 1 3 35 35 H 1.09000 * 109.47187 * 300.00233 * 6 5 3 36 36 H 1.09001 * 109.46558 * 60.00281 * 6 5 3 37 37 H 1.09001 * 109.47103 * 179.97438 * 6 5 3 38 38 H 1.08996 * 109.58517 * 353.38074 * 10 9 7 39 39 H 1.09005 * 109.58106 * 113.80286 * 10 9 7 40 40 H 1.08992 * 109.50025 * 65.31516 * 11 10 9 41 41 H 1.09000 * 109.49902 * 185.41737 * 11 10 9 42 42 H 1.09002 * 109.46240 * 181.38790 * 12 11 10 43 43 H 1.09007 * 109.46339 * 301.35690 * 12 11 10 44 44 H 1.09003 * 109.46658 * 54.99840 * 15 13 12 45 45 H 1.08994 * 109.47325 * 174.99543 * 15 13 12 46 46 H 1.00903 * 110.99940 * 303.94966 * 16 15 13 47 47 H 1.09001 * 109.47188 * 299.99732 * 17 16 15 48 48 H 1.08999 * 109.47390 * 59.99553 * 17 16 15 49 49 H 0.96997 * 119.99712 * 359.97438 * 20 18 17 50 50 H 0.96996 * 120.00190 * 179.97438 * 24 23 21 51 51 H 1.08999 * 109.58524 * 246.19629 * 29 9 7 52 52 H 1.08999 * 109.58691 * 6.62772 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 8 1.6621 2.0813 -1.2211 6 6 1.4561 3.4903 -1.1003 7 6 3.5420 1.4442 0.1238 8 8 4.2251 1.8609 -0.7876 9 7 4.1261 0.9826 1.2474 10 6 3.3119 0.4751 2.3601 11 6 3.7159 1.2100 3.6420 12 6 5.2253 1.0688 3.8520 13 6 5.9676 1.7064 2.6754 14 1 5.6891 2.7572 2.5958 15 6 7.4766 1.5939 2.9021 16 7 7.8558 2.3893 4.0774 17 6 9.3009 2.3044 4.3266 18 6 9.6516 3.1315 5.5366 19 8 8.7830 3.7330 6.1325 20 7 10.9303 3.2029 5.9566 21 6 11.2492 3.9557 7.0570 22 1 10.4759 4.4913 7.5876 23 6 12.5674 4.0289 7.4905 24 7 12.8733 4.7510 8.5450 25 14 13.9049 3.1021 6.5732 26 1 14.4677 3.9705 5.5081 27 1 14.9822 2.7205 7.5215 28 1 13.3282 1.8782 5.9608 29 6 5.5893 0.9722 1.3804 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3632 0.5139 0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 0.6620 3.6808 -0.3783 36 1 2.3771 3.9643 -0.7610 37 1 1.1725 3.9004 -2.0696 38 1 2.2571 0.6549 2.1527 39 1 3.4854 -0.5942 2.4817 40 1 3.4582 2.2653 3.5529 41 1 3.1883 0.7765 4.4916 42 1 5.5117 1.5701 4.7766 43 1 5.4859 0.0123 3.9160 44 1 7.7420 0.5499 3.0689 45 1 8.0047 1.9673 2.0248 46 1 7.5621 3.3491 3.9745 47 1 9.5787 1.2653 4.5035 48 1 9.8421 2.6825 3.4593 49 1 11.6248 2.7216 5.4803 50 1 13.7934 4.8018 8.8477 51 1 5.9450 -0.0572 1.4237 52 1 6.0374 1.4803 0.5265 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266778277.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:51:39 Heat of formation + Delta-G solvation = -143.661844 kcal Electronic energy + Delta-G solvation = -30178.349834 eV Core-core repulsion = 25983.732019 eV Total energy + Delta-G solvation = -4194.617815 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.64381 -40.33117 -39.38112 -38.19153 -36.87210 -35.94564 -34.86729 -33.77499 -33.44739 -32.46674 -29.40426 -28.63865 -27.31854 -26.58690 -25.89183 -24.45631 -23.31125 -22.65830 -21.49385 -21.21364 -20.33234 -20.15310 -18.65711 -17.86055 -17.75499 -17.13624 -16.86829 -16.66776 -16.38191 -16.20890 -15.73561 -15.58944 -15.48495 -15.33679 -15.04301 -14.92935 -14.52641 -14.50160 -14.39830 -14.22243 -13.96150 -13.91270 -13.40584 -13.21446 -13.09384 -13.02832 -12.83805 -12.80076 -12.48177 -12.42126 -12.09495 -12.05080 -11.98363 -11.80874 -11.70594 -11.66383 -11.52401 -11.40788 -11.35828 -10.45364 -10.30011 -10.25798 -9.69955 -9.31683 -8.42115 -6.03082 1.29893 1.34977 1.44076 1.46410 1.83083 1.94830 2.22333 2.71300 2.75278 3.14377 3.34436 3.40991 3.71182 3.83530 3.86354 3.90830 3.99959 4.10385 4.18036 4.24208 4.33082 4.37752 4.38712 4.42224 4.46441 4.50761 4.54635 4.55678 4.62620 4.72880 4.77986 4.79641 4.81707 4.88476 4.91576 5.08685 5.09547 5.17208 5.18429 5.43116 5.43994 5.47733 5.52131 5.53106 5.89514 5.97088 6.04183 6.33252 6.34753 6.58901 6.87150 7.07381 7.38870 7.95385 8.75483 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.026734 B = 0.001758 C = 0.001740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.116831 B =15920.151075 C =16092.523408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.121 4.121 3 C 0.075 3.925 4 H 0.109 0.891 5 O -0.380 6.380 6 C 0.026 3.974 7 C 0.484 3.516 8 O -0.580 6.580 9 N -0.604 5.604 10 C 0.097 3.903 11 C -0.134 4.134 12 C -0.106 4.106 13 C -0.088 4.088 14 H 0.054 0.946 15 C 0.068 3.932 16 N -0.680 5.680 17 C 0.062 3.938 18 C 0.448 3.552 19 O -0.614 6.614 20 N -0.591 5.591 21 C -0.330 4.330 22 H 0.055 0.945 23 C -0.015 4.015 24 N -0.934 5.934 25 Si 0.965 3.035 26 H -0.258 1.258 27 H -0.275 1.275 28 H -0.231 1.231 29 C 0.119 3.881 30 H 0.050 0.950 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.108 0.892 35 H 0.067 0.933 36 H 0.026 0.974 37 H 0.099 0.901 38 H 0.108 0.892 39 H 0.096 0.904 40 H 0.055 0.945 41 H 0.097 0.903 42 H 0.058 0.942 43 H 0.074 0.926 44 H 0.090 0.910 45 H 0.036 0.964 46 H 0.340 0.660 47 H 0.116 0.884 48 H 0.073 0.927 49 H 0.390 0.610 50 H 0.279 0.721 51 H 0.089 0.911 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.480 -15.204 -19.275 33.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.158 4.158 3 C 0.014 3.986 4 H 0.127 0.873 5 O -0.297 6.297 6 C -0.071 4.071 7 C 0.273 3.727 8 O -0.460 6.460 9 N -0.337 5.337 10 C -0.024 4.024 11 C -0.172 4.172 12 C -0.144 4.144 13 C -0.107 4.107 14 H 0.072 0.928 15 C -0.061 4.061 16 N -0.312 5.312 17 C -0.070 4.070 18 C 0.236 3.764 19 O -0.499 6.499 20 N -0.233 5.233 21 C -0.459 4.459 22 H 0.073 0.927 23 C -0.214 4.214 24 N -0.575 5.575 25 Si 0.785 3.215 26 H -0.183 1.183 27 H -0.200 1.200 28 H -0.154 1.154 29 C -0.004 4.004 30 H 0.070 0.930 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.126 0.874 35 H 0.086 0.914 36 H 0.045 0.955 37 H 0.117 0.883 38 H 0.126 0.874 39 H 0.114 0.886 40 H 0.073 0.927 41 H 0.115 0.885 42 H 0.077 0.923 43 H 0.092 0.908 44 H 0.109 0.891 45 H 0.054 0.946 46 H 0.159 0.841 47 H 0.134 0.866 48 H 0.091 0.909 49 H 0.225 0.775 50 H 0.089 0.911 51 H 0.107 0.893 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -23.760 -15.100 -18.951 33.936 hybrid contribution 1.746 1.161 -0.401 2.135 sum -22.014 -13.939 -19.352 32.456 Atomic orbital electron populations 1.21710 0.93015 1.03022 1.02587 1.21820 0.98435 0.91321 1.04225 1.22316 0.88783 0.98050 0.89477 0.87304 1.87953 1.87978 1.22030 1.31751 1.22986 0.99725 0.80253 1.04092 1.22047 0.92502 0.76562 0.81637 1.90679 1.66276 1.48455 1.40562 1.48249 1.07289 1.61963 1.16231 1.22277 0.95874 0.99553 0.84709 1.21948 0.96360 1.00860 0.98000 1.21447 0.94400 1.01209 0.97344 1.21437 0.94639 0.99503 0.95150 0.92777 1.21984 0.94689 0.99229 0.90188 1.60060 1.12950 1.17219 1.40924 1.21628 0.90265 1.00982 0.94153 1.21001 0.82024 0.85074 0.88293 1.90542 1.48792 1.50130 1.60394 1.42034 1.08242 1.45509 1.27489 1.19009 0.94766 1.26281 1.05824 0.92683 1.26122 0.99962 0.98070 0.97231 1.69802 1.20833 1.41050 1.25767 0.85362 0.77703 0.79697 0.78740 1.18285 1.19963 1.15378 1.21623 0.80013 1.01523 0.97226 0.93050 0.90937 0.91150 0.91997 0.87419 0.91431 0.95486 0.88284 0.87389 0.88596 0.92659 0.88504 0.92305 0.90757 0.89149 0.94594 0.84143 0.86594 0.90875 0.77470 0.91136 0.89316 0.91277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.81 71.98 0.71 -0.31 16 2 C -0.12 -1.19 5.18 30.59 0.16 -1.03 16 3 C 0.07 1.11 1.68 29.85 0.05 1.16 16 4 H 0.11 1.07 7.08 -2.39 -0.02 1.05 16 5 O -0.38 -7.45 9.42 -129.99 -1.22 -8.67 16 6 C 0.03 0.38 10.81 113.37 1.23 1.61 16 7 C 0.48 10.27 7.07 87.66 0.62 10.89 16 8 O -0.58 -18.10 15.92 15.96 0.25 -17.84 16 9 N -0.60 -9.75 2.97 -818.13 -2.43 -12.18 16 10 C 0.10 0.86 4.89 86.36 0.42 1.28 16 11 C -0.13 -1.58 6.08 30.67 0.19 -1.39 16 12 C -0.11 -1.80 5.07 30.62 0.16 -1.64 16 13 C -0.09 -1.64 2.49 -10.58 -0.03 -1.66 16 14 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 15 C 0.07 1.37 5.08 86.31 0.44 1.81 16 16 N -0.68 -19.35 5.56 -517.96 -2.88 -22.23 16 17 C 0.06 1.86 6.17 85.56 0.53 2.39 16 18 C 0.45 20.18 7.82 87.66 0.69 20.87 16 19 O -0.61 -34.04 15.78 -3.08 -0.05 -34.09 16 20 N -0.59 -27.89 5.09 -306.98 -1.56 -29.45 16 21 C -0.33 -19.39 10.16 84.04 0.85 -18.53 16 22 H 0.06 3.86 7.39 -2.91 -0.02 3.84 16 23 C -0.02 -0.85 5.50 84.93 0.47 -0.38 16 24 N -0.93 -56.43 13.96 21.66 0.30 -56.13 16 25 Si 0.97 38.78 27.74 68.60 1.90 40.68 16 26 H -0.26 -9.87 7.11 99.48 0.71 -9.17 16 27 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 28 H -0.23 -7.76 6.52 99.48 0.65 -7.12 16 29 C 0.12 2.10 5.74 86.50 0.50 2.60 16 30 H 0.05 0.51 7.82 -2.39 -0.02 0.49 16 31 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.07 0.29 8.14 -2.38 -0.02 0.27 16 33 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.11 0.58 5.43 -2.38 -0.01 0.56 16 35 H 0.07 0.65 8.08 -2.39 -0.02 0.63 16 36 H 0.03 0.49 8.14 -2.39 -0.02 0.47 16 37 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.11 0.50 4.74 -2.39 -0.01 0.49 16 39 H 0.10 0.52 8.14 -2.38 -0.02 0.50 16 40 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.06 1.36 7.72 -2.39 -0.02 1.35 16 43 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 44 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.04 0.69 8.14 -2.39 -0.02 0.68 16 46 H 0.34 10.79 8.43 -89.69 -0.76 10.03 16 47 H 0.12 2.89 8.14 -2.39 -0.02 2.87 16 48 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 49 H 0.39 15.17 5.76 -92.71 -0.53 14.64 16 50 H 0.28 15.40 8.31 -92.71 -0.77 14.62 16 51 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 52 H 0.07 1.56 7.00 -2.39 -0.02 1.54 16 Total: -1.00 -84.80 410.62 0.86 -83.94 By element: Atomic # 1 Polarization: 38.73 SS G_CDS: -0.43 Total: 38.30 kcal Atomic # 6 Polarization: 10.70 SS G_CDS: 6.97 Total: 17.67 kcal Atomic # 7 Polarization: -113.42 SS G_CDS: -6.57 Total: -119.99 kcal Atomic # 8 Polarization: -59.58 SS G_CDS: -1.02 Total: -60.60 kcal Atomic # 14 Polarization: 38.78 SS G_CDS: 1.90 Total: 40.68 kcal Total: -84.80 0.86 -83.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266778277.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.723 kcal (2) G-P(sol) polarization free energy of solvation -84.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds