Wall clock time and date at job start Wed Apr 1 2020 00:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47267 * 2 1 4 4 H 1.08995 * 109.47155 * 304.99754 * 3 2 1 5 5 C 1.52999 * 109.47142 * 184.99657 * 3 2 1 6 6 O 1.42904 * 109.47074 * 64.99927 * 3 2 1 7 7 C 1.42899 * 113.99942 * 210.00199 * 6 3 2 8 8 C 1.50700 * 109.47058 * 179.97438 * 7 6 3 9 9 O 1.21279 * 120.00323 * 359.97438 * 8 7 6 10 10 N 1.34778 * 119.99758 * 179.97438 * 8 7 6 11 11 C 1.47422 * 125.65069 * 355.05121 * 10 8 7 12 12 C 1.54908 * 104.83246 * 155.90793 * 11 10 8 13 13 C 1.55155 * 101.61608 * 36.99203 * 12 11 10 14 14 C 1.47027 * 125.64546 * 175.09585 * 10 8 7 15 15 H 1.09001 * 109.88221 * 300.43738 * 14 10 8 16 16 C 1.53001 * 109.88480 * 61.44912 * 14 10 8 17 17 N 1.46894 * 109.46902 * 184.52249 * 16 14 10 18 18 C 1.46904 * 111.00006 * 185.03851 * 17 16 14 19 19 C 1.50697 * 109.47441 * 179.97438 * 18 17 16 20 20 O 1.21289 * 120.00094 * 359.97438 * 19 18 17 21 21 N 1.34776 * 119.99864 * 179.97438 * 19 18 17 22 22 C 1.37098 * 119.99913 * 179.97438 * 21 19 18 23 23 H 1.08010 * 119.99825 * 359.97438 * 22 21 19 24 24 C 1.38943 * 120.00286 * 179.97438 * 22 21 19 25 25 N 1.31410 * 120.00228 * 180.02562 * 24 22 21 26 26 Si 1.86801 * 119.99870 * 0.02562 * 24 22 21 27 27 H 1.48499 * 109.47468 * 89.99891 * 26 24 22 28 28 H 1.48503 * 109.47054 * 209.99852 * 26 24 22 29 29 H 1.48498 * 109.46812 * 329.99474 * 26 24 22 30 30 H 1.08998 * 109.47023 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47440 * 299.99965 * 1 2 3 32 32 H 1.08998 * 109.46547 * 60.00386 * 1 2 3 33 33 H 1.08997 * 109.47243 * 239.99521 * 2 1 3 34 34 H 1.09003 * 109.47110 * 120.00062 * 2 1 3 35 35 H 1.09001 * 109.47085 * 60.00313 * 5 3 2 36 36 H 1.08999 * 109.47352 * 180.02562 * 5 3 2 37 37 H 1.09003 * 109.47497 * 300.00020 * 5 3 2 38 38 H 1.08998 * 109.47389 * 59.99664 * 7 6 3 39 39 H 1.08999 * 109.46869 * 299.99774 * 7 6 3 40 40 H 1.08994 * 110.36779 * 37.06518 * 11 10 8 41 41 H 1.08999 * 110.36437 * 274.74604 * 11 10 8 42 42 H 1.09003 * 111.00386 * 155.08000 * 12 11 10 43 43 H 1.08997 * 111.00219 * 278.89797 * 12 11 10 44 44 H 1.09004 * 110.72672 * 82.88053 * 13 12 11 45 45 H 1.09000 * 110.72138 * 206.15492 * 13 12 11 46 46 H 1.08999 * 109.46656 * 304.52176 * 16 14 10 47 47 H 1.08994 * 109.47153 * 64.51983 * 16 14 10 48 48 H 1.00894 * 111.00399 * 61.08311 * 17 16 14 49 49 H 1.09001 * 109.46750 * 299.99832 * 18 17 16 50 50 H 1.09007 * 109.47115 * 59.99261 * 18 17 16 51 51 H 0.96997 * 120.00033 * 0.02562 * 21 19 18 52 52 H 0.97006 * 120.00062 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5649 1.4443 -0.1256 6 8 1.6620 2.0814 1.2211 7 6 1.4559 3.4903 1.1003 8 6 1.0626 4.0571 2.4401 9 8 0.9676 3.3265 3.4035 10 7 0.8165 5.3760 2.5678 11 6 0.9929 6.3892 1.5115 12 6 0.0393 7.5443 1.9068 13 6 0.1701 7.5422 3.4528 14 6 0.3284 6.0428 3.7839 15 1 -0.6352 5.6243 4.0747 16 6 1.3385 5.8604 4.9185 17 7 0.7941 6.4353 6.1558 18 6 1.7845 6.3857 7.2396 19 6 1.1918 6.9834 8.4896 20 8 0.0562 7.4093 8.4786 21 7 1.9236 7.0447 9.6197 22 6 1.3846 7.5889 10.7567 23 1 0.3736 7.9689 10.7467 24 6 2.1387 7.6517 11.9220 25 7 1.6219 8.1728 13.0120 26 14 3.8875 6.9951 11.9391 27 1 4.8281 8.0823 11.5669 28 1 4.2169 6.4998 13.2998 29 1 4.0075 5.8813 10.9644 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3632 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 3.8532 0.9570 -1.0570 36 1 3.9283 2.4719 -0.1252 37 1 3.9995 0.9052 0.7162 38 1 0.6619 3.6808 0.3783 39 1 2.3769 3.9643 0.7610 40 1 0.7108 5.9794 0.5418 41 1 2.0248 6.7396 1.4905 42 1 0.3782 8.4916 1.4873 43 1 -0.9842 7.3278 1.6010 44 1 1.0519 8.1012 3.7661 45 1 -0.7294 7.9473 3.9165 46 1 1.5314 4.7977 5.0657 47 1 2.2690 6.3663 4.6614 48 1 -0.0601 5.9709 6.4251 49 1 2.0640 5.3493 7.4292 50 1 2.6689 6.9533 6.9499 51 1 2.8319 6.7045 9.6284 52 1 2.1486 8.2170 13.8254 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270034821.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:45:23 Heat of formation + Delta-G solvation = -115.319993 kcal Electronic energy + Delta-G solvation = -29874.110197 eV Core-core repulsion = 25680.721377 eV Total energy + Delta-G solvation = -4193.388820 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.54597 -38.95876 -38.37850 -37.48886 -35.31676 -34.18150 -33.83622 -32.03849 -31.62617 -30.52366 -30.25993 -28.02625 -26.93358 -24.79876 -24.09664 -23.35727 -22.48357 -21.46884 -21.21820 -19.57247 -19.15684 -18.25844 -17.63106 -17.12429 -16.92070 -16.07922 -15.99651 -15.50196 -15.28682 -14.89834 -14.62144 -14.46886 -14.27577 -13.98161 -13.87453 -13.74677 -13.61092 -13.46945 -13.17525 -13.12635 -12.83751 -12.59050 -12.48619 -12.33578 -12.04295 -11.99123 -11.80431 -11.73069 -11.62908 -11.49636 -11.40170 -11.16075 -10.98944 -10.92554 -10.89526 -10.55663 -10.04890 -9.94265 -9.93525 -9.53070 -8.95411 -8.51292 -8.14722 -8.06027 -6.27372 -3.78506 2.32669 2.36195 3.06826 3.10421 3.18211 3.42078 3.79426 4.08353 4.13781 4.21504 4.31782 4.35435 4.51037 4.59386 4.61326 4.67032 4.68600 4.80969 4.89907 4.91370 4.94247 5.06729 5.12347 5.18683 5.20295 5.23412 5.25640 5.35507 5.49380 5.51388 5.59121 5.59500 5.70092 5.71392 5.73144 5.77293 5.79521 5.88710 5.93050 5.96156 5.98947 6.13588 6.21227 6.72111 7.10710 7.24340 7.61356 7.63218 7.94036 8.18586 8.64105 8.98959 9.46728 9.87411 10.85783 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013960 B = 0.001999 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.276114 B =14005.054128 C =15176.711656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C 0.083 3.917 4 H 0.061 0.939 5 C -0.177 4.177 6 O -0.354 6.354 7 C 0.050 3.950 8 C 0.527 3.473 9 O -0.511 6.511 10 N -0.616 5.616 11 C 0.097 3.903 12 C -0.137 4.137 13 C -0.113 4.113 14 C 0.144 3.856 15 H 0.077 0.923 16 C 0.047 3.953 17 N -0.664 5.664 18 C 0.050 3.950 19 C 0.452 3.548 20 O -0.564 6.564 21 N -0.592 5.592 22 C -0.304 4.304 23 H 0.120 0.880 24 C 0.041 3.959 25 N -0.882 5.882 26 Si 0.879 3.121 27 H -0.271 1.271 28 H -0.277 1.277 29 H -0.269 1.269 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.050 0.950 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.056 0.944 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.085 0.915 43 H 0.075 0.925 44 H 0.083 0.917 45 H 0.089 0.911 46 H 0.046 0.954 47 H 0.069 0.931 48 H 0.351 0.649 49 H 0.045 0.955 50 H 0.086 0.914 51 H 0.370 0.630 52 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.400 -9.857 -33.701 35.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C 0.026 3.974 4 H 0.079 0.921 5 C -0.235 4.235 6 O -0.272 6.272 7 C -0.030 4.030 8 C 0.315 3.685 9 O -0.385 6.385 10 N -0.354 5.354 11 C -0.026 4.026 12 C -0.175 4.175 13 C -0.151 4.151 14 C 0.041 3.959 15 H 0.095 0.905 16 C -0.083 4.083 17 N -0.297 5.297 18 C -0.083 4.083 19 C 0.238 3.762 20 O -0.446 6.446 21 N -0.231 5.231 22 C -0.432 4.432 23 H 0.137 0.863 24 C -0.162 4.162 25 N -0.522 5.522 26 Si 0.706 3.294 27 H -0.196 1.196 28 H -0.202 1.202 29 H -0.195 1.195 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.090 0.910 42 H 0.103 0.897 43 H 0.094 0.906 44 H 0.101 0.899 45 H 0.108 0.892 46 H 0.064 0.936 47 H 0.088 0.912 48 H 0.170 0.830 49 H 0.063 0.937 50 H 0.104 0.896 51 H 0.203 0.797 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.744 -9.481 -32.955 34.401 hybrid contribution 1.621 -1.213 0.130 2.029 sum 4.365 -10.694 -32.825 34.798 Atomic orbital electron populations 1.21745 0.95245 1.01824 1.02224 1.21628 0.96777 0.94530 1.02864 1.22243 0.94369 0.94269 0.86560 0.92100 1.22315 0.95977 1.02470 1.02694 1.88074 1.89367 1.17729 1.32064 1.22183 1.01222 0.84265 0.95314 1.19896 0.77738 0.80620 0.90287 1.90758 1.50046 1.57761 1.39938 1.48508 1.66989 1.05887 1.13993 1.22394 1.00180 0.89174 0.90845 1.22835 0.99700 0.97985 0.96962 1.22597 1.04365 0.93960 0.94136 1.21528 0.97286 0.92989 0.84096 0.90472 1.22289 0.97358 0.98633 0.90034 1.59997 1.06897 1.60414 1.02388 1.21679 0.95773 0.99458 0.91397 1.19701 0.87351 0.85072 0.84107 1.90556 1.18654 1.51043 1.84350 1.42208 1.14371 1.56050 1.10493 1.19433 1.02069 1.35835 0.85904 0.86276 1.25034 0.98415 0.97555 0.95211 1.69624 1.37269 1.44225 1.01125 0.86671 0.84864 0.79417 0.78453 1.19624 1.20204 1.19502 0.92607 0.91730 0.93134 0.90650 0.90801 0.91470 0.92481 0.91462 0.90473 0.90577 0.90783 0.91039 0.89668 0.90592 0.89865 0.89249 0.93604 0.91223 0.82973 0.93712 0.89592 0.79693 0.91661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.81 37.16 0.36 -0.70 16 2 C -0.12 -0.80 5.64 -26.73 -0.15 -0.95 16 3 C 0.08 0.58 2.72 -26.73 -0.07 0.51 16 4 H 0.06 0.32 7.79 -51.93 -0.40 -0.08 16 5 C -0.18 -1.06 9.53 37.16 0.35 -0.70 16 6 O -0.35 -3.70 9.06 -55.14 -0.50 -4.20 16 7 C 0.05 0.42 5.16 36.01 0.19 0.60 16 8 C 0.53 6.28 7.74 -10.99 -0.09 6.20 16 9 O -0.51 -8.54 15.29 -14.35 -0.22 -8.76 16 10 N -0.62 -6.12 3.07 -162.99 -0.50 -6.62 16 11 C 0.10 0.59 6.74 -2.53 -0.02 0.57 16 12 C -0.14 -0.85 7.08 -24.58 -0.17 -1.02 16 13 C -0.11 -1.05 6.29 -24.87 -0.16 -1.21 16 14 C 0.14 1.66 3.12 -66.93 -0.21 1.45 16 15 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 16 C 0.05 0.65 5.08 -3.83 -0.02 0.63 16 17 N -0.66 -10.87 5.89 -115.06 -0.68 -11.55 16 18 C 0.05 0.88 6.16 -4.97 -0.03 0.85 16 19 C 0.45 10.62 7.82 -10.99 -0.09 10.53 16 20 O -0.56 -15.46 15.78 5.55 0.09 -15.37 16 21 N -0.59 -14.56 5.09 -10.96 -0.06 -14.61 16 22 C -0.30 -8.79 10.16 -14.94 -0.15 -8.94 16 23 H 0.12 3.92 7.39 -52.48 -0.39 3.53 16 24 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 25 N -0.88 -26.20 13.96 55.50 0.77 -25.43 16 26 Si 0.88 19.87 27.74 -169.99 -4.71 15.16 16 27 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 28 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 29 H -0.27 -5.62 6.52 56.52 0.37 -5.25 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.58 7.82 -51.93 -0.41 0.18 16 32 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.06 0.32 7.87 -51.93 -0.41 -0.09 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.08 0.45 7.90 -51.93 -0.41 0.04 16 39 H 0.08 0.46 7.87 -51.93 -0.41 0.05 16 40 H 0.07 0.29 7.47 -51.93 -0.39 -0.10 16 41 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.08 0.83 7.79 -51.93 -0.40 0.43 16 45 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.05 0.73 6.56 -51.93 -0.34 0.39 16 47 H 0.07 0.90 8.03 -51.93 -0.42 0.49 16 48 H 0.35 6.10 8.49 -39.29 -0.33 5.77 16 49 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 50 H 0.09 1.36 8.14 -51.92 -0.42 0.93 16 51 H 0.37 8.06 5.76 -40.82 -0.24 7.82 16 52 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 420.02 15.07 6.33 6.33 Total: -1.00 -36.20 420.02 -9.03 -45.23 By element: Atomic # 1 Polarization: 20.16 SS G_CDS: -9.21 Total: 10.95 kcal Atomic # 6 Polarization: 9.21 SS G_CDS: -0.34 Total: 8.86 kcal Atomic # 7 Polarization: -57.75 SS G_CDS: -0.46 Total: -58.21 kcal Atomic # 8 Polarization: -27.69 SS G_CDS: -0.63 Total: -28.33 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -4.71 Total: 15.16 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -36.20 -9.03 -45.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270034821.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.088 kcal (2) G-P(sol) polarization free energy of solvation -36.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds