Wall clock time and date at job start Wed Apr 1 2020 00:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47267 * 2 1 4 4 H 1.08995 * 109.47155 * 304.99754 * 3 2 1 5 5 C 1.52999 * 109.47142 * 184.99657 * 3 2 1 6 6 O 1.42904 * 109.47074 * 64.99927 * 3 2 1 7 7 C 1.42899 * 113.99942 * 210.00199 * 6 3 2 8 8 C 1.50700 * 109.47058 * 179.97438 * 7 6 3 9 9 O 1.21279 * 120.00323 * 359.97438 * 8 7 6 10 10 N 1.34778 * 119.99758 * 179.97438 * 8 7 6 11 11 C 1.47422 * 125.65069 * 355.05121 * 10 8 7 12 12 C 1.54908 * 104.83246 * 155.90793 * 11 10 8 13 13 C 1.55155 * 101.61608 * 36.99203 * 12 11 10 14 14 C 1.47027 * 125.64546 * 175.09585 * 10 8 7 15 15 H 1.09001 * 109.88221 * 300.43738 * 14 10 8 16 16 C 1.53001 * 109.88480 * 61.44912 * 14 10 8 17 17 N 1.46894 * 109.46902 * 184.52249 * 16 14 10 18 18 C 1.46904 * 111.00006 * 185.03851 * 17 16 14 19 19 C 1.50697 * 109.47441 * 179.97438 * 18 17 16 20 20 O 1.21289 * 120.00094 * 359.97438 * 19 18 17 21 21 N 1.34776 * 119.99864 * 179.97438 * 19 18 17 22 22 C 1.37098 * 119.99913 * 179.97438 * 21 19 18 23 23 H 1.08010 * 119.99825 * 359.97438 * 22 21 19 24 24 C 1.38943 * 120.00286 * 179.97438 * 22 21 19 25 25 N 1.31410 * 120.00228 * 180.02562 * 24 22 21 26 26 Si 1.86801 * 119.99870 * 0.02562 * 24 22 21 27 27 H 1.48499 * 109.47468 * 89.99891 * 26 24 22 28 28 H 1.48503 * 109.47054 * 209.99852 * 26 24 22 29 29 H 1.48498 * 109.46812 * 329.99474 * 26 24 22 30 30 H 1.08998 * 109.47023 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47440 * 299.99965 * 1 2 3 32 32 H 1.08998 * 109.46547 * 60.00386 * 1 2 3 33 33 H 1.08997 * 109.47243 * 239.99521 * 2 1 3 34 34 H 1.09003 * 109.47110 * 120.00062 * 2 1 3 35 35 H 1.09001 * 109.47085 * 60.00313 * 5 3 2 36 36 H 1.08999 * 109.47352 * 180.02562 * 5 3 2 37 37 H 1.09003 * 109.47497 * 300.00020 * 5 3 2 38 38 H 1.08998 * 109.47389 * 59.99664 * 7 6 3 39 39 H 1.08999 * 109.46869 * 299.99774 * 7 6 3 40 40 H 1.08994 * 110.36779 * 37.06518 * 11 10 8 41 41 H 1.08999 * 110.36437 * 274.74604 * 11 10 8 42 42 H 1.09003 * 111.00386 * 155.08000 * 12 11 10 43 43 H 1.08997 * 111.00219 * 278.89797 * 12 11 10 44 44 H 1.09004 * 110.72672 * 82.88053 * 13 12 11 45 45 H 1.09000 * 110.72138 * 206.15492 * 13 12 11 46 46 H 1.08999 * 109.46656 * 304.52176 * 16 14 10 47 47 H 1.08994 * 109.47153 * 64.51983 * 16 14 10 48 48 H 1.00894 * 111.00399 * 61.08311 * 17 16 14 49 49 H 1.09001 * 109.46750 * 299.99832 * 18 17 16 50 50 H 1.09007 * 109.47115 * 59.99261 * 18 17 16 51 51 H 0.96997 * 120.00033 * 0.02562 * 21 19 18 52 52 H 0.97006 * 120.00062 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5649 1.4443 -0.1256 6 8 1.6620 2.0814 1.2211 7 6 1.4559 3.4903 1.1003 8 6 1.0626 4.0571 2.4401 9 8 0.9676 3.3265 3.4035 10 7 0.8165 5.3760 2.5678 11 6 0.9929 6.3892 1.5115 12 6 0.0393 7.5443 1.9068 13 6 0.1701 7.5422 3.4528 14 6 0.3284 6.0428 3.7839 15 1 -0.6352 5.6243 4.0747 16 6 1.3385 5.8604 4.9185 17 7 0.7941 6.4353 6.1558 18 6 1.7845 6.3857 7.2396 19 6 1.1918 6.9834 8.4896 20 8 0.0562 7.4093 8.4786 21 7 1.9236 7.0447 9.6197 22 6 1.3846 7.5889 10.7567 23 1 0.3736 7.9689 10.7467 24 6 2.1387 7.6517 11.9220 25 7 1.6219 8.1728 13.0120 26 14 3.8875 6.9951 11.9391 27 1 4.8281 8.0823 11.5669 28 1 4.2169 6.4998 13.2998 29 1 4.0075 5.8813 10.9644 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3632 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 3.8532 0.9570 -1.0570 36 1 3.9283 2.4719 -0.1252 37 1 3.9995 0.9052 0.7162 38 1 0.6619 3.6808 0.3783 39 1 2.3769 3.9643 0.7610 40 1 0.7108 5.9794 0.5418 41 1 2.0248 6.7396 1.4905 42 1 0.3782 8.4916 1.4873 43 1 -0.9842 7.3278 1.6010 44 1 1.0519 8.1012 3.7661 45 1 -0.7294 7.9473 3.9165 46 1 1.5314 4.7977 5.0657 47 1 2.2690 6.3663 4.6614 48 1 -0.0601 5.9709 6.4251 49 1 2.0640 5.3493 7.4292 50 1 2.6689 6.9533 6.9499 51 1 2.8319 6.7045 9.6284 52 1 2.1486 8.2170 13.8254 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270034821.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:45:22 Heat of formation + Delta-G solvation = -142.638855 kcal Electronic energy + Delta-G solvation = -29875.294832 eV Core-core repulsion = 25680.721377 eV Total energy + Delta-G solvation = -4194.573455 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.36678 -40.32939 -39.53925 -38.37512 -36.67644 -35.86021 -34.74405 -33.77655 -32.82284 -31.47309 -30.78602 -28.85670 -28.23374 -26.29160 -24.81801 -24.44945 -23.40403 -22.00381 -21.92036 -21.36360 -20.49882 -19.93672 -18.37640 -18.01895 -17.74042 -17.39670 -17.09353 -16.73381 -16.64370 -16.15446 -15.72192 -15.40543 -15.26472 -15.05022 -14.94444 -14.80904 -14.66823 -14.34123 -14.19769 -14.17404 -14.00461 -13.73614 -13.52166 -13.31020 -13.23221 -12.98384 -12.91027 -12.65741 -12.54961 -12.43985 -12.27150 -12.06210 -12.00552 -11.92714 -11.85201 -11.58086 -11.53906 -11.47434 -10.86052 -10.59502 -10.49803 -10.27364 -9.75131 -9.42149 -8.43399 -6.04323 1.28907 1.33266 1.42352 1.51039 1.60636 1.90977 2.20815 2.64641 2.90784 3.12169 3.36439 3.49570 3.67983 3.80756 3.88528 3.93714 4.05567 4.10239 4.12547 4.18732 4.23347 4.29200 4.30294 4.38116 4.42366 4.44282 4.48521 4.65500 4.66875 4.71086 4.72625 4.82022 4.85352 5.04107 5.05142 5.05782 5.09486 5.18466 5.20957 5.29519 5.34034 5.42151 5.43170 5.50000 5.82320 5.95438 6.18374 6.22437 6.48992 6.56655 6.84749 7.10544 7.36087 7.91708 8.74075 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013960 B = 0.001999 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.276114 B =14005.054128 C =15176.711656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C 0.079 3.921 4 H 0.085 0.915 5 C -0.175 4.175 6 O -0.391 6.391 7 C 0.055 3.945 8 C 0.518 3.482 9 O -0.574 6.574 10 N -0.612 5.612 11 C 0.092 3.908 12 C -0.126 4.126 13 C -0.111 4.111 14 C 0.142 3.858 15 H 0.054 0.946 16 C 0.058 3.942 17 N -0.670 5.670 18 C 0.063 3.937 19 C 0.451 3.549 20 O -0.611 6.611 21 N -0.590 5.590 22 C -0.329 4.329 23 H 0.057 0.943 24 C -0.014 4.014 25 N -0.932 5.932 26 Si 0.964 3.036 27 H -0.254 1.254 28 H -0.274 1.274 29 H -0.237 1.237 30 H 0.059 0.941 31 H 0.036 0.964 32 H 0.065 0.935 33 H 0.099 0.901 34 H 0.053 0.947 35 H 0.086 0.914 36 H 0.062 0.938 37 H 0.047 0.953 38 H 0.107 0.893 39 H 0.105 0.895 40 H 0.106 0.894 41 H 0.089 0.911 42 H 0.109 0.891 43 H 0.079 0.921 44 H 0.080 0.920 45 H 0.075 0.925 46 H 0.023 0.977 47 H 0.083 0.917 48 H 0.341 0.659 49 H 0.064 0.936 50 H 0.117 0.883 51 H 0.389 0.611 52 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.459 -10.185 -37.653 39.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C 0.022 3.978 4 H 0.103 0.897 5 C -0.232 4.232 6 O -0.311 6.311 7 C -0.025 4.025 8 C 0.307 3.693 9 O -0.452 6.452 10 N -0.347 5.347 11 C -0.029 4.029 12 C -0.164 4.164 13 C -0.149 4.149 14 C 0.038 3.962 15 H 0.072 0.928 16 C -0.072 4.072 17 N -0.302 5.302 18 C -0.070 4.070 19 C 0.238 3.762 20 O -0.495 6.495 21 N -0.232 5.232 22 C -0.458 4.458 23 H 0.075 0.925 24 C -0.213 4.213 25 N -0.572 5.572 26 Si 0.784 3.216 27 H -0.178 1.178 28 H -0.199 1.199 29 H -0.160 1.160 30 H 0.078 0.922 31 H 0.055 0.945 32 H 0.085 0.915 33 H 0.117 0.883 34 H 0.071 0.929 35 H 0.105 0.895 36 H 0.081 0.919 37 H 0.066 0.934 38 H 0.125 0.875 39 H 0.123 0.877 40 H 0.124 0.876 41 H 0.107 0.893 42 H 0.127 0.873 43 H 0.098 0.902 44 H 0.098 0.902 45 H 0.094 0.906 46 H 0.041 0.959 47 H 0.102 0.898 48 H 0.159 0.841 49 H 0.082 0.918 50 H 0.135 0.865 51 H 0.225 0.775 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.815 -9.783 -36.974 38.686 hybrid contribution 0.520 -1.063 1.346 1.792 sum 6.335 -10.845 -35.628 37.777 Atomic orbital electron populations 1.21719 0.95646 1.01907 1.01554 1.21681 0.96425 0.94856 1.02999 1.22446 0.95066 0.94169 0.86154 0.89665 1.22305 0.95195 1.02823 1.02876 1.88048 1.89798 1.18958 1.34252 1.22296 1.03415 0.83527 0.93213 1.20726 0.76706 0.80725 0.91134 1.90727 1.52956 1.59370 1.42172 1.48599 1.65761 1.06098 1.14275 1.22731 1.01222 0.88029 0.90877 1.22840 1.00268 0.99314 0.93982 1.22529 1.03549 0.91872 0.96958 1.21432 0.95628 0.94614 0.84513 0.92798 1.22256 0.98448 0.97067 0.89435 1.60043 1.06426 1.60789 1.02953 1.21610 0.96315 1.00325 0.88729 1.20817 0.86642 0.83371 0.85324 1.90535 1.20959 1.52650 1.85338 1.42027 1.15277 1.56288 1.09598 1.19017 1.00386 1.37932 0.88509 0.92498 1.26101 1.04354 0.97038 0.93804 1.69799 1.39961 1.45307 1.02176 0.85372 0.76870 0.79910 0.79420 1.17814 1.19850 1.16022 0.92232 0.94509 0.91549 0.88276 0.92851 0.89492 0.91852 0.93383 0.87530 0.87727 0.87576 0.89316 0.87302 0.90231 0.90169 0.90592 0.95858 0.89816 0.84100 0.91797 0.86467 0.77539 0.91073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.81 71.98 0.71 -1.27 16 2 C -0.12 -1.47 5.64 30.59 0.17 -1.30 16 3 C 0.08 0.93 2.72 30.59 0.08 1.01 16 4 H 0.09 0.58 7.79 -2.39 -0.02 0.56 16 5 C -0.17 -1.69 9.53 71.98 0.69 -1.01 16 6 O -0.39 -7.79 9.06 -129.94 -1.18 -8.97 16 7 C 0.05 0.77 5.16 71.24 0.37 1.14 16 8 C 0.52 11.93 7.74 87.66 0.68 12.61 16 9 O -0.57 -19.89 15.29 16.01 0.24 -19.65 16 10 N -0.61 -11.16 3.07 -787.97 -2.42 -13.57 16 11 C 0.09 0.77 6.74 86.86 0.59 1.36 16 12 C -0.13 -1.17 7.08 31.99 0.23 -0.94 16 13 C -0.11 -1.95 6.29 31.80 0.20 -1.75 16 14 C 0.14 3.24 3.12 45.36 0.14 3.38 16 15 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 16 C 0.06 1.57 5.08 86.30 0.44 2.00 16 17 N -0.67 -22.05 5.89 -517.93 -3.05 -25.10 16 18 C 0.06 2.15 6.16 85.56 0.53 2.68 16 19 C 0.45 21.47 7.82 87.66 0.69 22.16 16 20 O -0.61 -35.03 15.78 -3.06 -0.05 -35.08 16 21 N -0.59 -29.12 5.09 -306.99 -1.56 -30.69 16 22 C -0.33 -19.84 10.16 84.04 0.85 -18.99 16 23 H 0.06 4.05 7.39 -2.91 -0.02 4.03 16 24 C -0.01 -0.80 5.50 84.92 0.47 -0.34 16 25 N -0.93 -57.11 13.96 21.66 0.30 -56.81 16 26 Si 0.96 40.06 27.74 68.60 1.90 41.96 16 27 H -0.25 -9.90 7.11 99.48 0.71 -9.19 16 28 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 29 H -0.24 -8.51 6.52 99.48 0.65 -7.86 16 30 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.04 0.68 7.82 -2.39 -0.02 0.66 16 32 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 36 H 0.06 0.53 7.87 -2.39 -0.02 0.51 16 37 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.11 0.84 7.90 -2.39 -0.02 0.82 16 39 H 0.11 0.86 7.87 -2.39 -0.02 0.84 16 40 H 0.11 0.27 7.47 -2.39 -0.02 0.26 16 41 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 42 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 43 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.08 1.47 7.79 -2.38 -0.02 1.45 16 45 H 0.08 1.53 8.14 -2.39 -0.02 1.52 16 46 H 0.02 0.75 6.56 -2.39 -0.02 0.73 16 47 H 0.08 2.01 8.03 -2.39 -0.02 1.99 16 48 H 0.34 12.40 8.49 -89.70 -0.76 11.63 16 49 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 50 H 0.12 3.34 8.14 -2.38 -0.02 3.33 16 51 H 0.39 16.09 5.76 -92.71 -0.53 15.55 16 52 H 0.28 15.63 8.31 -92.70 -0.77 14.86 16 Total: -1.00 -87.50 420.02 0.57 -86.93 By element: Atomic # 1 Polarization: 40.68 SS G_CDS: -0.44 Total: 40.24 kcal Atomic # 6 Polarization: 13.92 SS G_CDS: 6.82 Total: 20.74 kcal Atomic # 7 Polarization: -119.45 SS G_CDS: -6.73 Total: -126.17 kcal Atomic # 8 Polarization: -62.71 SS G_CDS: -0.98 Total: -63.69 kcal Atomic # 14 Polarization: 40.06 SS G_CDS: 1.90 Total: 41.96 kcal Total: -87.50 0.57 -86.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270034821.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.707 kcal (2) G-P(sol) polarization free energy of solvation -87.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds