Wall clock time and date at job start Wed Apr 1 2020 00:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47323 * 2 1 4 4 H 1.09004 * 109.47024 * 305.00227 * 3 2 1 5 5 C 1.52996 * 109.47083 * 185.00371 * 3 2 1 6 6 O 1.42896 * 109.47135 * 64.99887 * 3 2 1 7 7 C 1.42893 * 114.00196 * 210.00011 * 6 3 2 8 8 C 1.50696 * 109.47713 * 180.02562 * 7 6 3 9 9 O 1.21289 * 119.99491 * 0.02562 * 8 7 6 10 10 N 1.34770 * 120.00570 * 180.02562 * 8 7 6 11 11 C 1.47423 * 125.64937 * 0.04110 * 10 8 7 12 12 C 1.54910 * 104.83550 * 204.09380 * 11 10 8 13 13 C 1.55160 * 101.57993 * 322.98826 * 12 11 10 14 14 C 1.47031 * 125.65149 * 180.02562 * 10 8 7 15 15 H 1.09000 * 109.88265 * 59.40355 * 14 10 8 16 16 C 1.53003 * 109.87962 * 298.39657 * 14 10 8 17 17 N 1.46895 * 109.47301 * 54.99421 * 16 14 10 18 18 C 1.46904 * 111.00011 * 179.97438 * 17 16 14 19 19 C 1.50700 * 109.47192 * 180.02562 * 18 17 16 20 20 O 1.21293 * 119.99810 * 0.02562 * 19 18 17 21 21 N 1.34777 * 119.99675 * 180.28082 * 19 18 17 22 22 C 1.37102 * 119.99634 * 179.72687 * 21 19 18 23 23 H 1.08002 * 119.99868 * 359.97438 * 22 21 19 24 24 C 1.38945 * 119.99860 * 179.97438 * 22 21 19 25 25 N 1.31414 * 119.99894 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 120.00219 * 179.97438 * 24 22 21 27 27 H 1.48493 * 109.47208 * 89.99837 * 26 24 22 28 28 H 1.48499 * 109.47268 * 210.00491 * 26 24 22 29 29 H 1.48501 * 109.47048 * 330.00292 * 26 24 22 30 30 H 1.09004 * 109.47182 * 300.00118 * 1 2 3 31 31 H 1.09003 * 109.47184 * 59.99917 * 1 2 3 32 32 H 1.08999 * 109.47405 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47182 * 239.99882 * 2 1 3 34 34 H 1.08998 * 109.47497 * 119.99720 * 2 1 3 35 35 H 1.08999 * 109.47178 * 179.97438 * 5 3 2 36 36 H 1.08999 * 109.47395 * 299.99464 * 5 3 2 37 37 H 1.08998 * 109.47589 * 59.99594 * 5 3 2 38 38 H 1.09003 * 109.46907 * 60.00165 * 7 6 3 39 39 H 1.08996 * 109.47515 * 300.00745 * 7 6 3 40 40 H 1.08997 * 110.36822 * 322.93906 * 11 10 8 41 41 H 1.09007 * 110.36652 * 85.25637 * 11 10 8 42 42 H 1.09000 * 111.00485 * 81.06390 * 12 11 10 43 43 H 1.09001 * 111.00056 * 204.88242 * 12 11 10 44 44 H 1.08996 * 110.72072 * 277.14240 * 13 12 11 45 45 H 1.09001 * 110.71706 * 153.86145 * 13 12 11 46 46 H 1.08999 * 109.46732 * 294.99614 * 16 14 10 47 47 H 1.08998 * 109.46958 * 175.00314 * 16 14 10 48 48 H 1.00903 * 110.99867 * 56.05082 * 17 16 14 49 49 H 1.09009 * 109.46542 * 60.00300 * 18 17 16 50 50 H 1.08998 * 109.47050 * 300.00834 * 18 17 16 51 51 H 0.97001 * 120.00485 * 359.71840 * 21 19 18 52 52 H 0.97004 * 119.99542 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5648 1.4443 -0.1258 6 8 1.6620 2.0814 1.2210 7 6 1.4560 3.4902 1.1003 8 6 1.0639 4.0574 2.4403 9 8 0.9706 3.3269 3.4040 10 7 0.8170 5.3761 2.5679 11 6 0.8919 6.3730 1.4844 12 6 1.1432 7.7220 2.2033 13 6 0.2792 7.5593 3.4818 14 6 0.4280 6.0588 3.8106 15 1 1.1988 5.9174 4.5681 16 6 -0.9050 5.5021 4.3147 17 7 -0.8029 4.0441 4.4608 18 6 -2.0672 3.4736 4.9448 19 6 -1.9242 1.9798 5.0826 20 8 -0.8723 1.4431 4.8053 21 7 -2.9666 1.2395 5.5089 22 6 -2.8382 -0.1202 5.6289 23 1 -1.9019 -0.5981 5.3814 24 6 -3.9127 -0.8833 6.0690 25 7 -5.0522 -0.3018 6.3697 26 14 -3.7381 -2.7360 6.2318 27 1 -3.2614 -3.0700 7.5979 28 1 -5.0552 -3.3800 5.9957 29 1 -2.7588 -3.2307 5.2311 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.9281 2.4719 -0.1263 36 1 3.9995 0.9053 0.7160 37 1 3.8531 0.9569 -1.0571 38 1 0.6618 3.6808 0.3783 39 1 2.3768 3.9644 0.7608 40 1 1.7182 6.1416 0.8123 41 1 -0.0482 6.4061 0.9336 42 1 2.1969 7.8396 2.4562 43 1 0.7929 8.5583 1.5983 44 1 -0.7622 7.8083 3.2778 45 1 0.6718 8.1723 4.2931 46 1 -1.6923 5.7414 3.5998 47 1 -1.1432 5.9484 5.2802 48 1 -0.0376 3.7943 5.0691 49 1 -2.8629 3.6989 4.2345 50 1 -2.3130 3.9058 5.9148 51 1 -3.8077 1.6687 5.7310 52 1 -5.8025 -0.8347 6.6765 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270034822.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:45:26 Heat of formation + Delta-G solvation = -95.849624 kcal Electronic energy + Delta-G solvation = -31594.878197 eV Core-core repulsion = 27402.333676 eV Total energy + Delta-G solvation = -4192.544521 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.09525 -38.47676 -37.90675 -36.87163 -34.96982 -33.63721 -33.52740 -31.70625 -31.01243 -30.20862 -29.81898 -27.51666 -26.68183 -24.61714 -23.61984 -23.27799 -22.00497 -21.24987 -20.93498 -19.11644 -18.71676 -17.68281 -17.18491 -16.72893 -16.48721 -15.94443 -15.64810 -15.11105 -14.64022 -14.37261 -14.24334 -14.09089 -13.86017 -13.78835 -13.58793 -13.47013 -13.20107 -13.14522 -13.06921 -12.69863 -12.45342 -12.26929 -12.01345 -11.83577 -11.53146 -11.46018 -11.44620 -11.42288 -11.24447 -11.20321 -11.01721 -10.92800 -10.86539 -10.81561 -10.47266 -10.26588 -10.03792 -9.49356 -9.29850 -9.03385 -8.47998 -8.04351 -7.74124 -7.48290 -6.23605 -3.62651 2.85384 3.20112 3.29453 3.36137 3.43650 3.93308 4.17867 4.23702 4.33951 4.36636 4.60511 4.70399 4.80398 4.97887 5.00310 5.04674 5.09688 5.15124 5.23286 5.32252 5.32663 5.39123 5.42213 5.43768 5.46682 5.53311 5.56572 5.61442 5.63385 5.65938 5.69761 5.72620 5.87590 5.99191 6.01097 6.11519 6.14273 6.17507 6.22650 6.31717 6.47235 6.54338 6.65662 7.28677 7.55500 7.72691 7.81787 8.10704 8.28030 8.79873 8.84949 9.39387 9.77680 10.32759 10.95128 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.008552 B = 0.003709 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3273.127153 B = 7547.606504 C =10373.638926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C 0.084 3.916 4 H 0.056 0.944 5 C -0.175 4.175 6 O -0.343 6.343 7 C 0.056 3.944 8 C 0.514 3.486 9 O -0.431 6.431 10 N -0.619 5.619 11 C 0.099 3.901 12 C -0.132 4.132 13 C -0.126 4.126 14 C 0.145 3.855 15 H 0.070 0.930 16 C 0.046 3.954 17 N -0.640 5.640 18 C 0.047 3.953 19 C 0.444 3.556 20 O -0.556 6.556 21 N -0.576 5.576 22 C -0.289 4.289 23 H 0.101 0.899 24 C 0.017 3.983 25 N -0.909 5.909 26 Si 0.927 3.073 27 H -0.280 1.280 28 H -0.285 1.285 29 H -0.270 1.270 30 H 0.072 0.928 31 H 0.045 0.955 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.053 0.947 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.070 0.930 41 H 0.064 0.936 42 H 0.074 0.926 43 H 0.081 0.919 44 H 0.078 0.922 45 H 0.080 0.920 46 H 0.067 0.933 47 H 0.028 0.972 48 H 0.360 0.640 49 H 0.076 0.924 50 H 0.033 0.967 51 H 0.389 0.611 52 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.317 17.233 -13.952 25.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C 0.026 3.974 4 H 0.074 0.926 5 C -0.232 4.232 6 O -0.261 6.261 7 C -0.025 4.025 8 C 0.299 3.701 9 O -0.297 6.297 10 N -0.359 5.359 11 C -0.024 4.024 12 C -0.170 4.170 13 C -0.164 4.164 14 C 0.041 3.959 15 H 0.088 0.912 16 C -0.085 4.085 17 N -0.278 5.278 18 C -0.086 4.086 19 C 0.229 3.771 20 O -0.437 6.437 21 N -0.214 5.214 22 C -0.419 4.419 23 H 0.119 0.881 24 C -0.183 4.183 25 N -0.551 5.551 26 Si 0.754 3.246 27 H -0.206 1.206 28 H -0.211 1.211 29 H -0.195 1.195 30 H 0.091 0.909 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.072 0.928 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.082 0.918 42 H 0.093 0.907 43 H 0.100 0.900 44 H 0.097 0.903 45 H 0.099 0.901 46 H 0.085 0.915 47 H 0.046 0.954 48 H 0.184 0.816 49 H 0.094 0.906 50 H 0.051 0.949 51 H 0.222 0.778 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 12.713 15.943 -14.010 24.740 hybrid contribution -0.698 -0.063 0.784 1.052 sum 12.015 15.881 -13.226 23.906 Atomic orbital electron populations 1.21733 0.94952 1.01909 1.02429 1.21595 0.97079 0.94446 1.02441 1.22187 0.93830 0.94491 0.86888 0.92568 1.22306 0.96505 1.02007 1.02406 1.88182 1.89132 1.17630 1.31137 1.22099 0.99993 0.84341 0.96025 1.19647 0.79419 0.80399 0.90608 1.90869 1.44081 1.55937 1.38813 1.48278 1.71741 1.06319 1.09601 1.22246 1.01104 0.88325 0.90754 1.22750 1.00639 0.96826 0.96752 1.22654 1.01047 0.94503 0.98229 1.21509 0.96194 0.90741 0.87428 0.91188 1.22460 0.96712 0.90390 0.98907 1.60706 1.04456 1.06136 1.56454 1.21707 0.93711 0.95224 0.97953 1.19883 0.85537 0.87931 0.83738 1.90618 1.27819 1.72659 1.52597 1.41871 1.12641 1.07380 1.59526 1.19687 0.99532 0.81994 1.40679 0.88112 1.25194 0.94984 1.00322 0.97766 1.69625 1.02588 1.36408 1.46515 0.85904 0.77347 0.82666 0.78649 1.20625 1.21112 1.19493 0.90920 0.93617 0.92738 0.91211 0.90750 0.92817 0.91520 0.91832 0.91465 0.91830 0.91198 0.91775 0.90688 0.90050 0.90318 0.90142 0.91482 0.95376 0.81648 0.90597 0.94863 0.77808 0.92221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 9.81 37.15 0.36 -1.85 16 2 C -0.12 -1.52 5.64 -26.73 -0.15 -1.67 16 3 C 0.08 1.04 2.72 -26.73 -0.07 0.96 16 4 H 0.06 0.59 7.79 -51.93 -0.40 0.18 16 5 C -0.17 -1.77 9.53 37.16 0.35 -1.41 16 6 O -0.34 -5.62 9.06 -55.14 -0.50 -6.12 16 7 C 0.06 0.74 5.23 36.00 0.19 0.93 16 8 C 0.51 8.22 7.46 -10.99 -0.08 8.14 16 9 O -0.43 -9.15 12.30 -14.67 -0.18 -9.33 16 10 N -0.62 -7.52 3.07 -163.01 -0.50 -8.02 16 11 C 0.10 0.78 6.69 -2.53 -0.02 0.76 16 12 C -0.13 -0.79 7.08 -24.58 -0.17 -0.96 16 13 C -0.13 -0.92 6.48 -24.90 -0.16 -1.08 16 14 C 0.15 1.65 3.30 -66.95 -0.22 1.43 16 15 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 16 C 0.05 0.63 5.30 -3.83 -0.02 0.61 16 17 N -0.64 -12.01 2.97 -115.05 -0.34 -12.35 16 18 C 0.05 0.95 6.17 -4.97 -0.03 0.92 16 19 C 0.44 11.60 7.82 -10.98 -0.09 11.52 16 20 O -0.56 -16.65 15.51 5.55 0.09 -16.57 16 21 N -0.58 -15.81 5.29 -10.96 -0.06 -15.86 16 22 C -0.29 -8.63 9.68 -14.93 -0.14 -8.77 16 23 H 0.10 3.17 7.16 -52.49 -0.38 2.80 16 24 C 0.02 0.50 5.50 -17.47 -0.10 0.40 16 25 N -0.91 -26.16 13.05 55.50 0.72 -25.43 16 26 Si 0.93 22.37 29.55 -169.99 -5.02 17.34 16 27 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 28 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 29 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 30 H 0.07 1.34 7.82 -51.93 -0.41 0.93 16 31 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.05 0.49 7.87 -51.93 -0.41 0.08 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.78 8.09 -51.93 -0.42 0.36 16 39 H 0.06 0.65 7.58 -51.93 -0.39 0.26 16 40 H 0.07 0.45 7.48 -51.93 -0.39 0.06 16 41 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 42 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.08 0.54 7.77 -51.93 -0.40 0.14 16 45 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.07 0.89 8.02 -51.93 -0.42 0.48 16 47 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.36 7.51 6.94 -39.29 -0.27 7.24 16 49 H 0.08 1.44 8.14 -51.92 -0.42 1.02 16 50 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 51 H 0.39 10.25 7.90 -40.82 -0.32 9.93 16 52 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 417.22 15.07 6.29 6.29 Total: -1.00 -36.80 417.22 -9.12 -45.91 By element: Atomic # 1 Polarization: 23.49 SS G_CDS: -9.27 Total: 14.22 kcal Atomic # 6 Polarization: 10.27 SS G_CDS: -0.35 Total: 9.92 kcal Atomic # 7 Polarization: -61.50 SS G_CDS: -0.17 Total: -61.67 kcal Atomic # 8 Polarization: -31.43 SS G_CDS: -0.59 Total: -32.02 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -36.80 -9.12 -45.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270034822.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.936 kcal (2) G-P(sol) polarization free energy of solvation -36.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds