Wall clock time and date at job start Wed Apr 1 2020 00:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47323 * 2 1 4 4 H 1.09004 * 109.47024 * 305.00227 * 3 2 1 5 5 C 1.52996 * 109.47083 * 185.00371 * 3 2 1 6 6 O 1.42896 * 109.47135 * 64.99887 * 3 2 1 7 7 C 1.42893 * 114.00196 * 210.00011 * 6 3 2 8 8 C 1.50696 * 109.47713 * 180.02562 * 7 6 3 9 9 O 1.21289 * 119.99491 * 0.02562 * 8 7 6 10 10 N 1.34770 * 120.00570 * 180.02562 * 8 7 6 11 11 C 1.47423 * 125.64937 * 0.04110 * 10 8 7 12 12 C 1.54910 * 104.83550 * 204.09380 * 11 10 8 13 13 C 1.55160 * 101.57993 * 322.98826 * 12 11 10 14 14 C 1.47031 * 125.65149 * 180.02562 * 10 8 7 15 15 H 1.09000 * 109.88265 * 59.40355 * 14 10 8 16 16 C 1.53003 * 109.87962 * 298.39657 * 14 10 8 17 17 N 1.46895 * 109.47301 * 54.99421 * 16 14 10 18 18 C 1.46904 * 111.00011 * 179.97438 * 17 16 14 19 19 C 1.50700 * 109.47192 * 180.02562 * 18 17 16 20 20 O 1.21293 * 119.99810 * 0.02562 * 19 18 17 21 21 N 1.34777 * 119.99675 * 180.28082 * 19 18 17 22 22 C 1.37102 * 119.99634 * 179.72687 * 21 19 18 23 23 H 1.08002 * 119.99868 * 359.97438 * 22 21 19 24 24 C 1.38945 * 119.99860 * 179.97438 * 22 21 19 25 25 N 1.31414 * 119.99894 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 120.00219 * 179.97438 * 24 22 21 27 27 H 1.48493 * 109.47208 * 89.99837 * 26 24 22 28 28 H 1.48499 * 109.47268 * 210.00491 * 26 24 22 29 29 H 1.48501 * 109.47048 * 330.00292 * 26 24 22 30 30 H 1.09004 * 109.47182 * 300.00118 * 1 2 3 31 31 H 1.09003 * 109.47184 * 59.99917 * 1 2 3 32 32 H 1.08999 * 109.47405 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47182 * 239.99882 * 2 1 3 34 34 H 1.08998 * 109.47497 * 119.99720 * 2 1 3 35 35 H 1.08999 * 109.47178 * 179.97438 * 5 3 2 36 36 H 1.08999 * 109.47395 * 299.99464 * 5 3 2 37 37 H 1.08998 * 109.47589 * 59.99594 * 5 3 2 38 38 H 1.09003 * 109.46907 * 60.00165 * 7 6 3 39 39 H 1.08996 * 109.47515 * 300.00745 * 7 6 3 40 40 H 1.08997 * 110.36822 * 322.93906 * 11 10 8 41 41 H 1.09007 * 110.36652 * 85.25637 * 11 10 8 42 42 H 1.09000 * 111.00485 * 81.06390 * 12 11 10 43 43 H 1.09001 * 111.00056 * 204.88242 * 12 11 10 44 44 H 1.08996 * 110.72072 * 277.14240 * 13 12 11 45 45 H 1.09001 * 110.71706 * 153.86145 * 13 12 11 46 46 H 1.08999 * 109.46732 * 294.99614 * 16 14 10 47 47 H 1.08998 * 109.46958 * 175.00314 * 16 14 10 48 48 H 1.00903 * 110.99867 * 56.05082 * 17 16 14 49 49 H 1.09009 * 109.46542 * 60.00300 * 18 17 16 50 50 H 1.08998 * 109.47050 * 300.00834 * 18 17 16 51 51 H 0.97001 * 120.00485 * 359.71840 * 21 19 18 52 52 H 0.97004 * 119.99542 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5648 1.4443 -0.1258 6 8 1.6620 2.0814 1.2210 7 6 1.4560 3.4902 1.1003 8 6 1.0639 4.0574 2.4403 9 8 0.9706 3.3269 3.4040 10 7 0.8170 5.3761 2.5679 11 6 0.8919 6.3730 1.4844 12 6 1.1432 7.7220 2.2033 13 6 0.2792 7.5593 3.4818 14 6 0.4280 6.0588 3.8106 15 1 1.1988 5.9174 4.5681 16 6 -0.9050 5.5021 4.3147 17 7 -0.8029 4.0441 4.4608 18 6 -2.0672 3.4736 4.9448 19 6 -1.9242 1.9798 5.0826 20 8 -0.8723 1.4431 4.8053 21 7 -2.9666 1.2395 5.5089 22 6 -2.8382 -0.1202 5.6289 23 1 -1.9019 -0.5981 5.3814 24 6 -3.9127 -0.8833 6.0690 25 7 -5.0522 -0.3018 6.3697 26 14 -3.7381 -2.7360 6.2318 27 1 -3.2614 -3.0700 7.5979 28 1 -5.0552 -3.3800 5.9957 29 1 -2.7588 -3.2307 5.2311 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.9281 2.4719 -0.1263 36 1 3.9995 0.9053 0.7160 37 1 3.8531 0.9569 -1.0571 38 1 0.6618 3.6808 0.3783 39 1 2.3768 3.9644 0.7608 40 1 1.7182 6.1416 0.8123 41 1 -0.0482 6.4061 0.9336 42 1 2.1969 7.8396 2.4562 43 1 0.7929 8.5583 1.5983 44 1 -0.7622 7.8083 3.2778 45 1 0.6718 8.1723 4.2931 46 1 -1.6923 5.7414 3.5998 47 1 -1.1432 5.9484 5.2802 48 1 -0.0376 3.7943 5.0691 49 1 -2.8629 3.6989 4.2345 50 1 -2.3130 3.9058 5.9148 51 1 -3.8077 1.6687 5.7310 52 1 -5.8025 -0.8347 6.6765 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270034822.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:45:25 Heat of formation + Delta-G solvation = -122.023585 kcal Electronic energy + Delta-G solvation = -31596.013185 eV Core-core repulsion = 27402.333676 eV Total energy + Delta-G solvation = -4193.679509 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.09455 -40.01359 -39.42778 -37.95823 -36.46778 -35.68555 -34.67045 -33.22836 -32.61223 -31.27440 -30.78519 -28.53442 -28.21971 -26.30584 -24.72394 -24.49601 -23.06653 -21.98865 -21.89579 -21.01502 -19.94362 -19.74145 -18.27786 -17.89548 -17.55528 -17.35397 -16.90831 -16.57634 -16.32310 -15.93950 -15.76535 -15.26708 -15.09184 -14.94175 -14.82916 -14.70728 -14.49222 -14.13259 -13.98565 -13.90523 -13.66785 -13.49947 -13.36290 -13.24992 -12.98095 -12.82119 -12.77094 -12.51862 -12.44245 -12.41707 -12.23878 -12.14600 -12.02067 -11.94901 -11.87490 -11.54549 -11.48061 -11.45830 -10.50288 -10.25039 -10.22681 -9.97083 -9.49014 -8.83597 -8.45331 -5.93206 1.35969 1.37367 1.51706 1.89839 2.08329 2.11535 2.29451 2.97365 3.08933 3.21259 3.57176 3.65097 3.80288 3.87641 3.97110 4.06125 4.11239 4.16581 4.20157 4.30127 4.32487 4.38062 4.39946 4.40260 4.50527 4.54862 4.61999 4.65636 4.68734 4.69454 4.76802 4.82776 4.90183 4.98488 5.03404 5.07287 5.16298 5.19459 5.21970 5.29618 5.40519 5.41550 5.42705 5.61856 5.95363 6.23723 6.34164 6.58562 6.65042 6.82766 7.16458 7.60218 7.68564 8.19819 8.72890 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.008552 B = 0.003709 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3273.127153 B = 7547.606504 C =10373.638926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C 0.078 3.922 4 H 0.081 0.919 5 C -0.168 4.168 6 O -0.390 6.390 7 C 0.057 3.943 8 C 0.502 3.498 9 O -0.500 6.500 10 N -0.616 5.616 11 C 0.090 3.910 12 C -0.120 4.120 13 C -0.116 4.116 14 C 0.139 3.861 15 H 0.053 0.947 16 C 0.046 3.954 17 N -0.652 5.652 18 C 0.062 3.938 19 C 0.436 3.564 20 O -0.600 6.600 21 N -0.581 5.581 22 C -0.329 4.329 23 H 0.071 0.929 24 C -0.015 4.015 25 N -0.924 5.924 26 Si 0.992 3.008 27 H -0.270 1.270 28 H -0.266 1.266 29 H -0.276 1.276 30 H 0.021 0.979 31 H 0.070 0.930 32 H 0.053 0.947 33 H 0.105 0.895 34 H 0.044 0.956 35 H 0.065 0.935 36 H 0.045 0.955 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.098 0.902 40 H 0.088 0.912 41 H 0.073 0.927 42 H 0.078 0.922 43 H 0.109 0.891 44 H 0.088 0.912 45 H 0.096 0.904 46 H 0.074 0.926 47 H 0.043 0.957 48 H 0.344 0.656 49 H 0.091 0.909 50 H 0.054 0.946 51 H 0.393 0.607 52 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.352 19.402 -16.015 28.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.156 4.156 3 C 0.021 3.979 4 H 0.099 0.901 5 C -0.225 4.225 6 O -0.310 6.310 7 C -0.022 4.022 8 C 0.289 3.711 9 O -0.371 6.371 10 N -0.355 5.355 11 C -0.032 4.032 12 C -0.158 4.158 13 C -0.154 4.154 14 C 0.035 3.965 15 H 0.071 0.929 16 C -0.084 4.084 17 N -0.288 5.288 18 C -0.071 4.071 19 C 0.223 3.777 20 O -0.484 6.484 21 N -0.220 5.220 22 C -0.459 4.459 23 H 0.089 0.911 24 C -0.214 4.214 25 N -0.565 5.565 26 Si 0.815 3.185 27 H -0.195 1.195 28 H -0.191 1.191 29 H -0.202 1.202 30 H 0.040 0.960 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.124 0.876 34 H 0.063 0.937 35 H 0.084 0.916 36 H 0.064 0.936 37 H 0.108 0.892 38 H 0.102 0.898 39 H 0.115 0.885 40 H 0.107 0.893 41 H 0.091 0.909 42 H 0.097 0.903 43 H 0.127 0.873 44 H 0.107 0.893 45 H 0.114 0.886 46 H 0.092 0.908 47 H 0.061 0.939 48 H 0.166 0.834 49 H 0.109 0.891 50 H 0.072 0.928 51 H 0.227 0.773 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 12.716 18.203 -16.103 27.429 hybrid contribution -0.723 -0.676 1.403 1.717 sum 11.992 17.527 -14.700 25.828 Atomic orbital electron populations 1.21676 0.96481 1.01424 1.01008 1.21657 0.95669 0.95581 1.02702 1.22409 0.95407 0.93744 0.86381 0.90065 1.22254 0.94598 1.02854 1.02827 1.88149 1.89675 1.19473 1.33669 1.22226 1.02002 0.83236 0.94766 1.20315 0.78541 0.81315 0.90951 1.90852 1.47420 1.57935 1.40888 1.48358 1.69976 1.05951 1.11218 1.22586 1.02424 0.88085 0.90059 1.22762 1.00743 0.96420 0.95901 1.22649 1.02200 0.90994 0.99569 1.21660 0.94308 0.93398 0.87115 0.92864 1.22605 0.98471 0.87343 0.99951 1.60695 1.02768 1.09386 1.55968 1.21545 0.95191 0.90780 0.99545 1.20956 0.84357 0.90415 0.81939 1.90594 1.29468 1.74266 1.54088 1.41925 1.13182 1.06936 1.59920 1.19601 0.99318 0.83514 1.43439 0.91073 1.26008 0.94213 1.04790 0.96369 1.69684 1.02952 1.38192 1.45705 0.84952 0.77905 0.76887 0.78708 1.19531 1.19057 1.20153 0.96013 0.91125 0.92810 0.87626 0.93662 0.91555 0.93595 0.89201 0.89845 0.88455 0.89326 0.90885 0.90287 0.87250 0.89323 0.88568 0.90794 0.93917 0.83415 0.89110 0.92816 0.77306 0.91384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.49 9.81 71.98 0.71 -3.78 16 2 C -0.12 -3.10 5.64 30.59 0.17 -2.93 16 3 C 0.08 1.87 2.72 30.59 0.08 1.95 16 4 H 0.08 1.51 7.79 -2.38 -0.02 1.50 16 5 C -0.17 -3.17 9.53 71.98 0.69 -2.48 16 6 O -0.39 -13.33 9.06 -129.94 -1.18 -14.51 16 7 C 0.06 1.50 5.23 71.23 0.37 1.87 16 8 C 0.50 16.53 7.46 87.66 0.65 17.18 16 9 O -0.50 -22.78 12.30 16.27 0.20 -22.58 16 10 N -0.62 -14.48 3.07 -788.04 -2.42 -16.90 16 11 C 0.09 1.15 6.69 86.86 0.58 1.73 16 12 C -0.12 -0.98 7.08 31.99 0.23 -0.75 16 13 C -0.12 -1.34 6.48 31.78 0.21 -1.13 16 14 C 0.14 3.05 3.30 45.34 0.15 3.20 16 15 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 16 C 0.05 1.23 5.30 86.31 0.46 1.69 16 17 N -0.65 -25.45 2.97 -517.92 -1.54 -26.98 16 18 C 0.06 2.57 6.17 85.56 0.53 3.10 16 19 C 0.44 24.06 7.82 87.66 0.69 24.74 16 20 O -0.60 -38.66 15.51 -3.07 -0.05 -38.70 16 21 N -0.58 -33.35 5.29 -306.98 -1.62 -34.97 16 22 C -0.33 -20.55 9.68 84.04 0.81 -19.74 16 23 H 0.07 4.79 7.16 -2.91 -0.02 4.77 16 24 C -0.01 -0.86 5.50 84.92 0.47 -0.39 16 25 N -0.92 -53.24 13.05 21.66 0.28 -52.95 16 26 Si 0.99 46.37 29.55 68.60 2.03 48.39 16 27 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 28 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 29 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 30 H 0.02 0.85 7.82 -2.39 -0.02 0.83 16 31 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.11 1.96 8.14 -2.39 -0.02 1.95 16 34 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.07 1.07 7.87 -2.39 -0.02 1.05 16 36 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.08 1.84 8.09 -2.39 -0.02 1.82 16 39 H 0.10 1.79 7.58 -2.39 -0.02 1.78 16 40 H 0.09 0.82 7.48 -2.39 -0.02 0.80 16 41 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 42 H 0.08 0.62 8.14 -2.39 -0.02 0.61 16 43 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 44 H 0.09 0.89 7.77 -2.39 -0.02 0.88 16 45 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.07 1.87 8.02 -2.39 -0.02 1.85 16 47 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 48 H 0.34 15.39 6.94 -89.69 -0.62 14.77 16 49 H 0.09 3.47 8.14 -2.38 -0.02 3.45 16 50 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 51 H 0.39 21.41 7.90 -92.71 -0.73 20.67 16 52 H 0.28 14.83 8.31 -92.71 -0.77 14.06 16 Total: -1.00 -87.76 417.22 2.05 -85.71 By element: Atomic # 1 Polarization: 49.66 SS G_CDS: -0.45 Total: 49.21 kcal Atomic # 6 Polarization: 17.49 SS G_CDS: 6.79 Total: 24.28 kcal Atomic # 7 Polarization: -126.51 SS G_CDS: -5.29 Total: -131.80 kcal Atomic # 8 Polarization: -74.77 SS G_CDS: -1.02 Total: -75.79 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.39 kcal Total: -87.76 2.05 -85.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270034822.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.316 kcal (2) G-P(sol) polarization free energy of solvation -87.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds