Wall clock time and date at job start Wed Apr 1 2020 00:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46958 * 2 1 4 4 H 1.08999 * 110.53776 * 52.39389 * 3 2 1 5 5 C 1.54807 * 110.48978 * 289.77332 * 3 2 1 6 6 C 1.54995 * 102.09179 * 220.44479 * 5 3 2 7 7 O 1.44376 * 103.49320 * 37.01919 * 6 5 3 8 8 C 1.43741 * 106.97901 * 319.94711 * 7 6 5 9 9 H 1.09004 * 109.99739 * 267.01645 * 8 7 6 10 10 C 1.50695 * 109.88371 * 145.93161 * 8 7 6 11 11 O 1.21283 * 119.99862 * 357.16600 * 10 8 7 12 12 N 1.34771 * 120.00104 * 177.16417 * 10 8 7 13 13 C 1.46509 * 120.00035 * 179.97438 * 12 10 8 14 14 C 1.52998 * 109.47149 * 174.33136 * 13 12 10 15 15 H 1.08997 * 109.47247 * 174.70097 * 14 13 12 16 16 C 1.52999 * 109.47240 * 294.70276 * 14 13 12 17 17 N 1.46902 * 109.46731 * 54.69924 * 14 13 12 18 18 C 1.46892 * 111.00269 * 55.64767 * 17 14 13 19 19 C 1.46903 * 110.99619 * 179.59986 * 17 14 13 20 20 C 1.50703 * 109.47242 * 170.00306 * 19 17 14 21 21 O 1.21291 * 119.99650 * 359.97438 * 20 19 17 22 22 N 1.34773 * 120.00322 * 180.02562 * 20 19 17 23 23 C 1.37095 * 120.00027 * 179.97438 * 22 20 19 24 24 H 1.07995 * 120.00149 * 0.02562 * 23 22 20 25 25 C 1.38957 * 120.00026 * 179.97438 * 23 22 20 26 26 N 1.31408 * 120.00251 * 180.02562 * 25 23 22 27 27 Si 1.86804 * 119.99928 * 359.97438 * 25 23 22 28 28 H 1.48496 * 109.46899 * 90.00211 * 27 25 23 29 29 H 1.48497 * 109.47156 * 210.00026 * 27 25 23 30 30 H 1.48498 * 109.47069 * 330.00377 * 27 25 23 31 31 H 1.08993 * 109.47854 * 59.98894 * 1 2 3 32 32 H 1.08998 * 109.46903 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.46967 * 299.99236 * 1 2 3 34 34 H 1.09011 * 109.46531 * 240.00808 * 2 1 3 35 35 H 1.08993 * 109.47416 * 120.00797 * 2 1 3 36 36 H 1.08998 * 110.90810 * 338.63860 * 5 3 2 37 37 H 1.09005 * 110.90552 * 102.24603 * 5 3 2 38 38 H 1.08998 * 110.62393 * 155.53031 * 6 5 3 39 39 H 1.09012 * 110.61688 * 278.52253 * 6 5 3 40 40 H 0.96997 * 120.00354 * 0.02562 * 12 10 8 41 41 H 1.08991 * 109.47151 * 294.33484 * 13 12 10 42 42 H 1.09004 * 109.46361 * 54.33399 * 13 12 10 43 43 H 1.08999 * 109.47042 * 299.99451 * 16 14 13 44 44 H 1.08998 * 109.47669 * 59.99731 * 16 14 13 45 45 H 1.08998 * 109.47503 * 180.02562 * 16 14 13 46 46 H 1.09002 * 109.47160 * 53.33419 * 18 17 14 47 47 H 1.09000 * 109.47437 * 173.33501 * 18 17 14 48 48 H 1.09005 * 109.46931 * 293.33780 * 18 17 14 49 49 H 1.09000 * 109.47021 * 290.00106 * 19 17 14 50 50 H 1.08997 * 109.47719 * 50.00024 * 19 17 14 51 51 H 0.97001 * 119.99940 * 359.97438 * 22 20 19 52 52 H 0.96996 * 120.00155 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5802 2.0107 0.8086 5 6 1.7580 2.1170 -1.3646 6 6 3.0601 2.9232 -1.6035 7 8 4.0919 2.0595 -1.0802 8 6 3.5756 1.4717 0.1257 9 1 3.8656 2.0730 0.9873 10 6 4.1039 0.0687 0.2789 11 8 4.8094 -0.4111 -0.5830 12 7 3.7925 -0.6528 1.3739 13 6 4.3056 -2.0170 1.5226 14 6 3.9265 -2.5568 2.9031 15 1 4.2253 -3.6023 2.9790 16 6 4.6413 -1.7423 3.9831 17 7 2.4734 -2.4480 3.0891 18 6 1.7515 -3.1332 2.0088 19 6 2.0707 -2.9669 4.4031 20 6 0.6269 -2.6191 4.6596 21 8 -0.0042 -1.9994 3.8297 22 7 0.0374 -2.9956 5.8116 23 6 -1.2758 -2.6787 6.0451 24 1 -1.8380 -2.1277 5.3058 25 6 -1.8838 -3.0674 7.2326 26 7 -3.1427 -2.7641 7.4563 27 14 -0.9119 -4.0224 8.5106 28 1 -0.2575 -3.0727 9.4460 29 1 -1.8295 -4.9105 9.2684 30 1 0.1240 -4.8429 7.8332 31 1 -0.3634 0.5139 -0.8898 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5137 0.8901 34 1 1.8932 -0.5138 -0.8902 35 1 1.8933 -0.5139 0.8898 36 1 1.6143 1.3701 -2.1453 37 1 0.8959 2.7808 -1.2997 38 1 3.2117 3.1009 -2.6682 39 1 3.0341 3.8654 -1.0560 40 1 3.2280 -0.2692 2.0631 41 1 3.8724 -2.6542 0.7517 42 1 5.3909 -2.0099 1.4207 43 1 5.7195 -1.8231 3.8451 44 1 4.3426 -0.6968 3.9073 45 1 4.3716 -2.1272 4.9666 46 1 2.1115 -4.1586 1.9246 47 1 0.6846 -3.1398 2.2318 48 1 1.9229 -2.6096 1.0682 49 1 2.1917 -4.0500 4.4187 50 1 2.6950 -2.5205 5.1771 51 1 0.5423 -3.4908 6.4755 52 1 -3.5669 -3.0351 8.2854 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275850165.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:28:07 Heat of formation + Delta-G solvation = -97.785222 kcal Electronic energy + Delta-G solvation = -32049.670610 eV Core-core repulsion = 27857.042155 eV Total energy + Delta-G solvation = -4192.628455 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.85484 -39.29337 -38.41438 -37.26222 -35.09424 -34.22339 -33.73223 -31.71949 -31.35416 -30.39013 -29.64796 -28.48118 -26.21350 -24.96047 -23.97279 -23.51451 -22.83035 -21.39114 -20.06310 -19.91713 -19.34759 -18.30165 -17.26287 -16.95074 -16.60344 -16.18326 -15.63649 -15.48262 -15.14187 -14.84452 -14.75204 -14.58011 -14.37126 -14.14401 -13.84355 -13.48847 -13.34610 -13.27644 -13.11078 -12.73837 -12.50221 -12.48305 -12.24721 -12.14989 -11.87352 -11.75773 -11.68919 -11.45079 -11.38611 -11.35772 -11.16657 -11.05318 -10.76221 -10.72502 -10.63140 -10.58832 -10.20037 -10.02120 -9.57701 -9.51135 -8.89237 -8.62382 -8.22409 -8.07799 -6.35363 -3.86730 2.60357 2.89125 2.98344 3.02766 3.11657 3.68779 3.77155 3.90914 4.06173 4.24519 4.49954 4.56225 4.60569 4.71950 4.82693 4.88134 4.96044 5.10307 5.14189 5.18839 5.23214 5.34383 5.35564 5.43400 5.49148 5.52002 5.55511 5.56692 5.59212 5.69586 5.74620 5.75621 5.80221 5.81784 5.87248 5.90300 5.97402 6.12501 6.17682 6.29212 6.36692 6.42692 6.47837 6.58550 7.05893 7.19708 7.53449 7.54134 8.10145 8.22977 8.55689 8.91073 9.38336 9.78855 10.77717 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.015410 B = 0.002897 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.517351 B = 9663.391601 C =10813.771998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.139 4.139 3 C -0.112 4.112 4 H 0.095 0.905 5 C -0.148 4.148 6 C 0.044 3.956 7 O -0.349 6.349 8 C 0.061 3.939 9 H 0.092 0.908 10 C 0.519 3.481 11 O -0.531 6.531 12 N -0.713 5.713 13 C 0.130 3.870 14 C 0.064 3.936 15 H 0.055 0.945 16 C -0.149 4.149 17 N -0.513 5.513 18 C 0.017 3.983 19 C 0.038 3.962 20 C 0.453 3.547 21 O -0.557 6.557 22 N -0.591 5.591 23 C -0.304 4.304 24 H 0.120 0.880 25 C 0.042 3.958 26 N -0.881 5.881 27 Si 0.879 3.121 28 H -0.271 1.271 29 H -0.277 1.277 30 H -0.270 1.270 31 H 0.045 0.955 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.098 0.902 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.095 0.905 39 H 0.063 0.937 40 H 0.414 0.586 41 H 0.066 0.934 42 H 0.073 0.927 43 H 0.060 0.940 44 H 0.065 0.935 45 H 0.062 0.938 46 H 0.015 0.985 47 H 0.095 0.905 48 H 0.066 0.934 49 H 0.048 0.952 50 H 0.094 0.906 51 H 0.369 0.631 52 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.276 5.278 -10.716 18.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.176 4.176 3 C -0.131 4.131 4 H 0.113 0.887 5 C -0.186 4.186 6 C -0.033 4.033 7 O -0.267 6.267 8 C 0.000 4.000 9 H 0.110 0.890 10 C 0.305 3.695 11 O -0.407 6.407 12 N -0.370 5.370 13 C 0.006 3.994 14 C -0.045 4.045 15 H 0.073 0.927 16 C -0.206 4.206 17 N -0.238 5.238 18 C -0.130 4.130 19 C -0.094 4.094 20 C 0.239 3.761 21 O -0.439 6.439 22 N -0.231 5.231 23 C -0.432 4.432 24 H 0.137 0.863 25 C -0.161 4.161 26 N -0.521 5.521 27 Si 0.705 3.295 28 H -0.196 1.196 29 H -0.202 1.202 30 H -0.196 1.196 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.116 0.884 36 H 0.098 0.902 37 H 0.102 0.898 38 H 0.113 0.887 39 H 0.081 0.919 40 H 0.252 0.748 41 H 0.085 0.915 42 H 0.091 0.909 43 H 0.079 0.921 44 H 0.084 0.916 45 H 0.081 0.919 46 H 0.034 0.966 47 H 0.114 0.886 48 H 0.085 0.915 49 H 0.066 0.934 50 H 0.112 0.888 51 H 0.202 0.798 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 14.254 5.801 -11.873 19.437 hybrid contribution 0.308 -1.466 1.699 2.265 sum 14.562 4.334 -10.174 18.285 Atomic orbital electron populations 1.21676 0.94772 1.02279 1.01406 1.22149 0.97257 0.94292 1.03951 1.22585 0.92569 0.98984 0.98930 0.88670 1.23234 0.98381 0.99829 0.97117 1.23635 0.86498 0.93229 0.99942 1.88978 1.37756 1.61108 1.38876 1.22726 0.94222 0.92619 0.90425 0.89014 1.20279 0.80203 0.87199 0.81859 1.90697 1.37190 1.71781 1.41014 1.46064 1.52805 1.15290 1.22806 1.21368 0.99027 0.82987 0.96055 1.21988 0.89034 0.98667 0.94828 0.92683 1.21919 0.99479 1.01040 0.98175 1.61623 1.03048 1.57209 1.01889 1.22622 1.01634 0.94682 0.94082 1.21986 0.96824 0.98209 0.92356 1.19611 0.87928 0.85033 0.83575 1.90530 1.65141 1.42914 1.45316 1.42219 1.12421 1.51447 1.16998 1.19404 0.85113 1.34284 1.04441 0.86266 1.25035 0.95755 0.97869 0.97478 1.69614 1.10640 1.45906 1.25969 0.86689 0.80086 0.80430 0.82266 1.19623 1.20231 1.19567 0.93582 0.92345 0.92105 0.92239 0.88440 0.90168 0.89808 0.88730 0.91916 0.74751 0.91544 0.90879 0.92078 0.91576 0.91928 0.96646 0.88617 0.91520 0.93366 0.88848 0.79798 0.91609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.79 37.16 0.36 -1.37 16 2 C -0.14 -1.62 4.12 -26.73 -0.11 -1.73 16 3 C -0.11 -1.13 3.04 -89.09 -0.27 -1.40 16 4 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 5 C -0.15 -1.32 6.03 -24.73 -0.15 -1.47 16 6 C 0.04 0.39 7.72 38.21 0.29 0.69 16 7 O -0.35 -4.54 10.74 -54.81 -0.59 -5.13 16 8 C 0.06 0.70 3.84 -27.31 -0.10 0.59 16 9 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 10 C 0.52 6.88 5.69 -10.99 -0.06 6.82 16 11 O -0.53 -9.11 16.52 -14.02 -0.23 -9.35 16 12 N -0.71 -8.01 3.24 -60.29 -0.20 -8.21 16 13 C 0.13 1.40 4.61 -4.04 -0.02 1.38 16 14 C 0.06 0.66 2.32 -67.71 -0.16 0.50 16 15 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 16 C -0.15 -1.36 8.88 37.16 0.33 -1.03 16 17 N -0.51 -6.79 3.72 -236.33 -0.88 -7.67 16 18 C 0.02 0.24 8.54 60.06 0.51 0.76 16 19 C 0.04 0.55 5.27 -4.97 -0.03 0.53 16 20 C 0.45 9.35 7.41 -10.99 -0.08 9.26 16 21 O -0.56 -13.35 13.98 5.55 0.08 -13.27 16 22 N -0.59 -13.22 5.09 -10.96 -0.06 -13.27 16 23 C -0.30 -8.20 10.16 -14.93 -0.15 -8.35 16 24 H 0.12 3.69 7.39 -52.49 -0.39 3.30 16 25 C 0.04 1.10 5.50 -17.47 -0.10 1.01 16 26 N -0.88 -25.09 13.96 55.50 0.77 -24.31 16 27 Si 0.88 18.75 27.74 -169.99 -4.71 14.03 16 28 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 29 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 30 H -0.27 -5.23 6.52 56.52 0.37 -4.86 16 31 H 0.05 0.48 7.62 -51.93 -0.40 0.09 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.06 0.76 7.70 -51.92 -0.40 0.36 16 35 H 0.10 1.22 3.68 -51.93 -0.19 1.03 16 36 H 0.08 0.77 7.77 -51.93 -0.40 0.37 16 37 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 40 H 0.41 4.55 6.48 -40.82 -0.26 4.29 16 41 H 0.07 0.77 6.81 -51.93 -0.35 0.42 16 42 H 0.07 0.78 8.13 -51.93 -0.42 0.36 16 43 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.07 0.64 7.33 -51.93 -0.38 0.26 16 45 H 0.06 0.57 6.21 -51.93 -0.32 0.25 16 46 H 0.02 0.19 8.12 -51.93 -0.42 -0.23 16 47 H 0.10 1.68 5.79 -51.93 -0.30 1.38 16 48 H 0.07 0.88 5.61 -51.93 -0.29 0.59 16 49 H 0.05 0.65 8.12 -51.93 -0.42 0.23 16 50 H 0.09 1.20 5.84 -51.93 -0.30 0.90 16 51 H 0.37 7.30 5.76 -40.82 -0.24 7.06 16 52 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 398.55 15.07 6.01 6.01 Total: -1.00 -32.85 398.55 -8.00 -40.85 By element: Atomic # 1 Polarization: 22.58 SS G_CDS: -8.47 Total: 14.12 kcal Atomic # 6 Polarization: 5.92 SS G_CDS: 0.27 Total: 6.20 kcal Atomic # 7 Polarization: -53.11 SS G_CDS: -0.36 Total: -53.46 kcal Atomic # 8 Polarization: -27.00 SS G_CDS: -0.74 Total: -27.74 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -4.71 Total: 14.03 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.85 -8.00 -40.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275850165.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.931 kcal (2) G-P(sol) polarization free energy of solvation -32.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds