Wall clock time and date at job start Wed Apr 1 2020 00:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46958 * 2 1 4 4 H 1.08999 * 110.53776 * 52.39389 * 3 2 1 5 5 C 1.54807 * 110.48978 * 289.77332 * 3 2 1 6 6 C 1.54995 * 102.09179 * 220.44479 * 5 3 2 7 7 O 1.44376 * 103.49320 * 37.01919 * 6 5 3 8 8 C 1.43741 * 106.97901 * 319.94711 * 7 6 5 9 9 H 1.09004 * 109.99739 * 267.01645 * 8 7 6 10 10 C 1.50695 * 109.88371 * 145.93161 * 8 7 6 11 11 O 1.21283 * 119.99862 * 357.16600 * 10 8 7 12 12 N 1.34771 * 120.00104 * 177.16417 * 10 8 7 13 13 C 1.46509 * 120.00035 * 179.97438 * 12 10 8 14 14 C 1.52998 * 109.47149 * 174.33136 * 13 12 10 15 15 H 1.08997 * 109.47247 * 174.70097 * 14 13 12 16 16 C 1.52999 * 109.47240 * 294.70276 * 14 13 12 17 17 N 1.46902 * 109.46731 * 54.69924 * 14 13 12 18 18 C 1.46892 * 111.00269 * 55.64767 * 17 14 13 19 19 C 1.46903 * 110.99619 * 179.59986 * 17 14 13 20 20 C 1.50703 * 109.47242 * 170.00306 * 19 17 14 21 21 O 1.21291 * 119.99650 * 359.97438 * 20 19 17 22 22 N 1.34773 * 120.00322 * 180.02562 * 20 19 17 23 23 C 1.37095 * 120.00027 * 179.97438 * 22 20 19 24 24 H 1.07995 * 120.00149 * 0.02562 * 23 22 20 25 25 C 1.38957 * 120.00026 * 179.97438 * 23 22 20 26 26 N 1.31408 * 120.00251 * 180.02562 * 25 23 22 27 27 Si 1.86804 * 119.99928 * 359.97438 * 25 23 22 28 28 H 1.48496 * 109.46899 * 90.00211 * 27 25 23 29 29 H 1.48497 * 109.47156 * 210.00026 * 27 25 23 30 30 H 1.48498 * 109.47069 * 330.00377 * 27 25 23 31 31 H 1.08993 * 109.47854 * 59.98894 * 1 2 3 32 32 H 1.08998 * 109.46903 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.46967 * 299.99236 * 1 2 3 34 34 H 1.09011 * 109.46531 * 240.00808 * 2 1 3 35 35 H 1.08993 * 109.47416 * 120.00797 * 2 1 3 36 36 H 1.08998 * 110.90810 * 338.63860 * 5 3 2 37 37 H 1.09005 * 110.90552 * 102.24603 * 5 3 2 38 38 H 1.08998 * 110.62393 * 155.53031 * 6 5 3 39 39 H 1.09012 * 110.61688 * 278.52253 * 6 5 3 40 40 H 0.96997 * 120.00354 * 0.02562 * 12 10 8 41 41 H 1.08991 * 109.47151 * 294.33484 * 13 12 10 42 42 H 1.09004 * 109.46361 * 54.33399 * 13 12 10 43 43 H 1.08999 * 109.47042 * 299.99451 * 16 14 13 44 44 H 1.08998 * 109.47669 * 59.99731 * 16 14 13 45 45 H 1.08998 * 109.47503 * 180.02562 * 16 14 13 46 46 H 1.09002 * 109.47160 * 53.33419 * 18 17 14 47 47 H 1.09000 * 109.47437 * 173.33501 * 18 17 14 48 48 H 1.09005 * 109.46931 * 293.33780 * 18 17 14 49 49 H 1.09000 * 109.47021 * 290.00106 * 19 17 14 50 50 H 1.08997 * 109.47719 * 50.00024 * 19 17 14 51 51 H 0.97001 * 119.99940 * 359.97438 * 22 20 19 52 52 H 0.96996 * 120.00155 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5802 2.0107 0.8086 5 6 1.7580 2.1170 -1.3646 6 6 3.0601 2.9232 -1.6035 7 8 4.0919 2.0595 -1.0802 8 6 3.5756 1.4717 0.1257 9 1 3.8656 2.0730 0.9873 10 6 4.1039 0.0687 0.2789 11 8 4.8094 -0.4111 -0.5830 12 7 3.7925 -0.6528 1.3739 13 6 4.3056 -2.0170 1.5226 14 6 3.9265 -2.5568 2.9031 15 1 4.2253 -3.6023 2.9790 16 6 4.6413 -1.7423 3.9831 17 7 2.4734 -2.4480 3.0891 18 6 1.7515 -3.1332 2.0088 19 6 2.0707 -2.9669 4.4031 20 6 0.6269 -2.6191 4.6596 21 8 -0.0042 -1.9994 3.8297 22 7 0.0374 -2.9956 5.8116 23 6 -1.2758 -2.6787 6.0451 24 1 -1.8380 -2.1277 5.3058 25 6 -1.8838 -3.0674 7.2326 26 7 -3.1427 -2.7641 7.4563 27 14 -0.9119 -4.0224 8.5106 28 1 -0.2575 -3.0727 9.4460 29 1 -1.8295 -4.9105 9.2684 30 1 0.1240 -4.8429 7.8332 31 1 -0.3634 0.5139 -0.8898 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5137 0.8901 34 1 1.8932 -0.5138 -0.8902 35 1 1.8933 -0.5139 0.8898 36 1 1.6143 1.3701 -2.1453 37 1 0.8959 2.7808 -1.2997 38 1 3.2117 3.1009 -2.6682 39 1 3.0341 3.8654 -1.0560 40 1 3.2280 -0.2692 2.0631 41 1 3.8724 -2.6542 0.7517 42 1 5.3909 -2.0099 1.4207 43 1 5.7195 -1.8231 3.8451 44 1 4.3426 -0.6968 3.9073 45 1 4.3716 -2.1272 4.9666 46 1 2.1115 -4.1586 1.9246 47 1 0.6846 -3.1398 2.2318 48 1 1.9229 -2.6096 1.0682 49 1 2.1917 -4.0500 4.4187 50 1 2.6950 -2.5205 5.1771 51 1 0.5423 -3.4908 6.4755 52 1 -3.5669 -3.0351 8.2854 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275850165.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:28:06 Heat of formation + Delta-G solvation = -121.807080 kcal Electronic energy + Delta-G solvation = -32050.712276 eV Core-core repulsion = 27857.042155 eV Total energy + Delta-G solvation = -4193.670121 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.79761 -40.59256 -39.58222 -38.50385 -36.14834 -35.86735 -34.94088 -33.68510 -32.30126 -31.22594 -30.57868 -29.71574 -27.37759 -26.32900 -25.10988 -24.67884 -23.65152 -22.30719 -21.30765 -20.93509 -20.81352 -20.04865 -18.27426 -17.93131 -17.63981 -17.30575 -16.87558 -16.78648 -16.42864 -15.98630 -15.86115 -15.59643 -15.49500 -15.25299 -15.11076 -14.83317 -14.48663 -14.37391 -14.30122 -14.18516 -13.85637 -13.53162 -13.35873 -13.14753 -13.06152 -12.92708 -12.72987 -12.58106 -12.37612 -12.31649 -12.27480 -12.17143 -12.08847 -11.95374 -11.68757 -11.63266 -11.51967 -11.40645 -11.09875 -10.48289 -10.26473 -10.16559 -9.87675 -9.21895 -8.36654 -5.95963 1.32257 1.37681 1.45977 1.58331 1.99095 2.04700 2.25975 2.61922 3.05341 3.19900 3.29797 3.40882 3.64835 3.70883 3.77142 4.00593 4.02867 4.14305 4.21476 4.27692 4.35788 4.38604 4.42282 4.46087 4.46858 4.53878 4.59888 4.64364 4.71283 4.73861 4.79605 4.81994 4.89867 4.96925 4.98065 5.05470 5.11316 5.18531 5.20793 5.30636 5.39794 5.42026 5.44803 5.58133 5.79122 5.92941 6.04662 6.19038 6.56761 6.65560 6.95581 7.23508 7.47629 8.05282 8.80997 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.015410 B = 0.002897 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.517351 B = 9663.391601 C =10813.771998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.131 4.131 3 C -0.108 4.108 4 H 0.110 0.890 5 C -0.145 4.145 6 C 0.040 3.960 7 O -0.380 6.380 8 C 0.061 3.939 9 H 0.115 0.885 10 C 0.517 3.483 11 O -0.576 6.576 12 N -0.701 5.701 13 C 0.130 3.870 14 C 0.072 3.928 15 H 0.075 0.925 16 C -0.147 4.147 17 N -0.523 5.523 18 C 0.027 3.973 19 C 0.049 3.951 20 C 0.455 3.545 21 O -0.595 6.595 22 N -0.596 5.596 23 C -0.319 4.319 24 H 0.058 0.942 25 C -0.017 4.017 26 N -0.938 5.938 27 Si 0.961 3.039 28 H -0.258 1.258 29 H -0.280 1.280 30 H -0.232 1.232 31 H 0.062 0.938 32 H 0.039 0.961 33 H 0.049 0.951 34 H 0.043 0.957 35 H 0.088 0.912 36 H 0.069 0.931 37 H 0.105 0.895 38 H 0.104 0.896 39 H 0.084 0.916 40 H 0.417 0.583 41 H 0.056 0.944 42 H 0.080 0.920 43 H 0.078 0.922 44 H 0.059 0.941 45 H 0.070 0.930 46 H 0.031 0.969 47 H 0.055 0.945 48 H 0.068 0.932 49 H 0.074 0.926 50 H 0.125 0.875 51 H 0.387 0.613 52 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.227 4.831 -9.408 20.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.169 4.169 3 C -0.127 4.127 4 H 0.128 0.872 5 C -0.182 4.182 6 C -0.036 4.036 7 O -0.299 6.299 8 C 0.000 4.000 9 H 0.132 0.868 10 C 0.304 3.696 11 O -0.455 6.455 12 N -0.357 5.357 13 C 0.006 3.994 14 C -0.036 4.036 15 H 0.092 0.908 16 C -0.205 4.205 17 N -0.248 5.248 18 C -0.121 4.121 19 C -0.081 4.081 20 C 0.242 3.758 21 O -0.478 6.478 22 N -0.239 5.239 23 C -0.449 4.449 24 H 0.076 0.924 25 C -0.215 4.215 26 N -0.579 5.579 27 Si 0.782 3.218 28 H -0.182 1.182 29 H -0.206 1.206 30 H -0.155 1.155 31 H 0.081 0.919 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.106 0.894 36 H 0.087 0.913 37 H 0.123 0.877 38 H 0.123 0.877 39 H 0.102 0.898 40 H 0.256 0.744 41 H 0.074 0.926 42 H 0.098 0.902 43 H 0.097 0.903 44 H 0.078 0.922 45 H 0.088 0.912 46 H 0.050 0.950 47 H 0.074 0.926 48 H 0.087 0.913 49 H 0.092 0.908 50 H 0.143 0.857 51 H 0.222 0.778 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 17.227 5.354 -10.566 20.906 hybrid contribution -0.653 -1.256 1.129 1.811 sum 16.574 4.098 -9.437 19.508 Atomic orbital electron populations 1.21617 0.95174 1.01194 1.01648 1.22030 0.96717 0.95474 1.02649 1.22584 0.91898 0.97913 1.00332 0.87224 1.23233 0.99315 0.99845 0.95846 1.23856 0.85423 0.93414 1.00858 1.88947 1.39468 1.61948 1.39556 1.22847 0.94608 0.91672 0.90914 0.86799 1.20687 0.79479 0.87965 0.81479 1.90670 1.39413 1.72874 1.42556 1.46022 1.52069 1.15366 1.22215 1.21418 0.99292 0.82478 0.96260 1.22023 0.86762 1.00035 0.94815 0.90772 1.21933 1.00384 1.00353 0.97804 1.61552 1.04935 1.57369 1.00984 1.22417 0.99365 0.95832 0.94494 1.21913 0.92334 1.00009 0.93887 1.20831 0.90158 0.82746 0.82046 1.90530 1.66904 1.44018 1.46393 1.42058 1.10867 1.52609 1.18340 1.18971 0.87207 1.34847 1.03829 0.92431 1.26055 0.96828 0.98759 0.99859 1.69802 1.13178 1.47824 1.27115 0.85414 0.79001 0.78947 0.78460 1.18209 1.20591 1.15494 0.91883 0.94138 0.93180 0.93774 0.89419 0.91259 0.87686 0.87745 0.89791 0.74422 0.92565 0.90229 0.90345 0.92210 0.91159 0.95043 0.92587 0.91346 0.90815 0.85715 0.77764 0.91382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.44 9.79 71.98 0.70 -2.73 16 2 C -0.13 -3.09 4.12 30.60 0.13 -2.96 16 3 C -0.11 -2.08 3.04 -9.80 -0.03 -2.11 16 4 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 5 C -0.14 -2.38 6.03 31.89 0.19 -2.18 16 6 C 0.04 0.66 7.72 72.66 0.56 1.22 16 7 O -0.38 -9.57 10.74 -130.26 -1.40 -10.97 16 8 C 0.06 1.32 3.84 30.22 0.12 1.43 16 9 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 10 C 0.52 13.50 5.69 87.66 0.50 14.00 16 11 O -0.58 -19.92 16.52 15.68 0.26 -19.66 16 12 N -0.70 -15.08 3.24 -463.06 -1.50 -16.58 16 13 C 0.13 2.58 4.61 86.38 0.40 2.98 16 14 C 0.07 1.25 2.32 44.91 0.10 1.36 16 15 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 16 C -0.15 -2.13 8.88 71.98 0.64 -1.49 16 17 N -0.52 -12.78 3.72 -901.62 -3.35 -16.14 16 18 C 0.03 0.74 8.54 127.69 1.09 1.83 16 19 C 0.05 1.30 5.27 85.56 0.45 1.75 16 20 C 0.45 18.51 7.41 87.66 0.65 19.16 16 21 O -0.60 -29.48 13.98 -3.06 -0.04 -29.52 16 22 N -0.60 -26.24 5.09 -306.99 -1.56 -27.80 16 23 C -0.32 -17.85 10.16 84.04 0.85 -17.00 16 24 H 0.06 3.85 7.39 -2.91 -0.02 3.83 16 25 C -0.02 -0.91 5.50 84.93 0.47 -0.44 16 26 N -0.94 -55.45 13.96 21.66 0.30 -55.15 16 27 Si 0.96 37.57 27.74 68.60 1.90 39.48 16 28 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 29 H -0.28 -11.09 7.11 99.48 0.71 -10.39 16 30 H -0.23 -7.53 6.52 99.48 0.65 -6.88 16 31 H 0.06 1.31 7.62 -2.39 -0.02 1.30 16 32 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 34 H 0.04 1.17 7.70 -2.38 -0.02 1.15 16 35 H 0.09 2.22 3.68 -2.39 -0.01 2.21 16 36 H 0.07 1.29 7.77 -2.39 -0.02 1.27 16 37 H 0.10 1.28 8.14 -2.38 -0.02 1.26 16 38 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 40 H 0.42 8.67 6.48 -92.71 -0.60 8.07 16 41 H 0.06 1.26 6.81 -2.39 -0.02 1.24 16 42 H 0.08 1.54 8.13 -2.38 -0.02 1.52 16 43 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.06 0.96 7.33 -2.39 -0.02 0.94 16 45 H 0.07 0.93 6.21 -2.39 -0.01 0.92 16 46 H 0.03 0.75 8.12 -2.39 -0.02 0.73 16 47 H 0.06 2.01 5.79 -2.39 -0.01 2.00 16 48 H 0.07 1.83 5.61 -2.38 -0.01 1.81 16 49 H 0.07 1.66 8.12 -2.39 -0.02 1.64 16 50 H 0.13 2.61 5.84 -2.39 -0.01 2.59 16 51 H 0.39 14.12 5.76 -92.71 -0.53 13.58 16 52 H 0.28 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -77.91 398.55 1.18 -76.73 By element: Atomic # 1 Polarization: 45.06 SS G_CDS: -0.25 Total: 44.81 kcal Atomic # 6 Polarization: 7.99 SS G_CDS: 6.82 Total: 14.82 kcal Atomic # 7 Polarization: -109.55 SS G_CDS: -6.11 Total: -115.67 kcal Atomic # 8 Polarization: -58.98 SS G_CDS: -1.18 Total: -60.16 kcal Atomic # 14 Polarization: 37.57 SS G_CDS: 1.90 Total: 39.48 kcal Total: -77.91 1.18 -76.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275850165.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.082 kcal (2) G-P(sol) polarization free energy of solvation -77.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds