Wall clock time and date at job start Wed Apr 1 2020 00:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47005 * 2 1 4 4 H 1.08997 * 109.49850 * 55.06905 * 3 2 1 5 5 C 1.53196 * 109.49843 * 294.99795 * 3 2 1 6 6 N 1.46925 * 108.77419 * 185.38423 * 5 3 2 7 7 C 1.34777 * 120.62933 * 233.58799 * 6 5 3 8 8 O 1.21283 * 119.99750 * 359.97438 * 7 6 5 9 9 C 1.50702 * 119.99928 * 180.27723 * 7 6 5 10 10 N 1.46491 * 109.46957 * 179.72354 * 9 7 6 11 11 C 1.46503 * 120.00157 * 269.99880 * 10 9 7 12 12 C 1.34774 * 120.00401 * 89.99834 * 10 9 7 13 13 O 1.21281 * 119.99656 * 0.02562 * 12 10 9 14 14 C 1.50708 * 120.00400 * 179.97438 * 12 10 9 15 15 O 1.42896 * 109.47116 * 180.02562 * 14 12 10 16 16 C 1.42893 * 113.99893 * 180.02562 * 15 14 12 17 17 C 1.46931 * 118.73924 * 53.85839 * 6 5 3 18 18 C 1.53622 * 108.54424 * 306.09826 * 17 6 5 19 19 C 1.53036 * 109.24613 * 54.85288 * 18 17 6 20 20 H 1.09001 * 109.44783 * 178.49924 * 19 18 17 21 21 N 1.46499 * 109.45981 * 58.53219 * 19 18 17 22 22 C 1.36934 * 119.99878 * 84.93073 * 21 19 18 23 23 H 1.08000 * 119.99983 * 0.02562 * 22 21 19 24 24 C 1.38814 * 119.99798 * 180.02562 * 22 21 19 25 25 N 1.31613 * 120.00251 * 359.97438 * 24 22 21 26 26 Si 1.86808 * 119.99818 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.47155 * 0.02562 * 26 24 22 28 28 H 1.48497 * 109.46925 * 120.00008 * 26 24 22 29 29 H 1.48494 * 109.46996 * 239.99852 * 26 24 22 30 30 H 1.09004 * 109.47418 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47407 * 299.99985 * 1 2 3 32 32 H 1.09000 * 109.46992 * 60.00192 * 1 2 3 33 33 H 1.09002 * 109.46854 * 239.99501 * 2 1 3 34 34 H 1.09002 * 109.46444 * 120.00330 * 2 1 3 35 35 H 1.08994 * 109.58453 * 65.59846 * 5 3 2 36 36 H 1.09003 * 109.58452 * 305.16905 * 5 3 2 37 37 H 1.09004 * 109.46965 * 299.72211 * 9 7 6 38 38 H 1.08994 * 109.46990 * 59.72065 * 9 7 6 39 39 H 1.08998 * 109.47311 * 89.99613 * 11 10 9 40 40 H 1.09001 * 109.47371 * 210.00280 * 11 10 9 41 41 H 1.09003 * 109.46700 * 329.99774 * 11 10 9 42 42 H 1.08999 * 109.46957 * 300.00083 * 14 12 10 43 43 H 1.08993 * 109.46855 * 60.00139 * 14 12 10 44 44 H 1.08996 * 109.47458 * 300.00040 * 16 15 14 45 45 H 1.09001 * 109.47306 * 60.00214 * 16 15 14 46 46 H 1.09001 * 109.47624 * 179.97438 * 16 15 14 47 47 H 1.09000 * 109.58052 * 65.92898 * 17 6 5 48 48 H 1.08995 * 109.58699 * 186.35097 * 17 6 5 49 49 H 1.09003 * 109.63253 * 294.86246 * 18 17 6 50 50 H 1.08998 * 109.43170 * 174.72646 * 18 17 6 51 51 H 0.96999 * 120.00182 * 264.93250 * 21 19 18 52 52 H 0.97005 * 120.00474 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6066 1.9816 0.8424 5 6 1.6351 2.1280 -1.3088 6 7 2.2409 3.4659 -1.3490 7 6 1.4806 4.5579 -1.5634 8 8 0.2843 4.4414 -1.7259 9 6 2.1178 5.9228 -1.6081 10 7 1.0883 6.9343 -1.8592 11 6 0.7549 7.3145 -3.2341 12 6 0.4478 7.5151 -0.8254 13 8 0.7241 7.2006 0.3129 14 6 -0.6109 8.5561 -1.0837 15 8 -1.1380 9.0186 0.1614 16 6 -2.1552 10.0133 0.0283 17 6 3.6923 3.5902 -1.1570 18 6 4.0734 2.8888 0.1555 19 6 3.5656 1.4455 0.1221 20 1 3.8574 0.9368 1.0409 21 7 4.1486 0.7495 -1.0276 22 6 5.3869 0.1743 -0.9238 23 1 5.9336 0.2334 0.0057 24 6 5.9396 -0.4847 -2.0134 25 7 5.2732 -0.5572 -3.1460 26 14 7.6286 -1.2701 -1.8716 27 1 8.1631 -1.0510 -0.5035 28 1 7.5201 -2.7279 -2.1325 29 1 8.5449 -0.6562 -2.8658 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8932 -0.5139 0.8900 35 1 0.5497 2.2169 -1.3541 36 1 1.9913 1.5400 -2.1547 37 1 2.6040 6.1282 -0.6543 38 1 2.8585 5.9520 -2.4071 39 1 -0.0439 6.6725 -3.6052 40 1 0.4251 8.3533 -3.2541 41 1 1.6357 7.2009 -3.8662 42 1 -0.1721 9.3938 -1.6257 43 1 -1.4130 8.1188 -1.6781 44 1 -1.7490 10.8812 -0.4912 45 1 -2.9895 9.6057 -0.5425 46 1 -2.5034 10.3116 1.0172 47 1 4.2128 3.1191 -1.9908 48 1 3.9647 4.6442 -1.1022 49 1 3.6208 3.4143 0.9964 50 1 5.1578 2.8905 0.2660 51 1 3.6575 0.6961 -1.8624 52 1 5.6592 -1.0181 -3.9073 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276740390.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:31:49 Heat of formation + Delta-G solvation = -94.092753 kcal Electronic energy + Delta-G solvation = -31592.901186 eV Core-core repulsion = 27400.432849 eV Total energy + Delta-G solvation = -4192.468338 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.54217 -39.59641 -37.99298 -37.41974 -35.52065 -34.42185 -33.72957 -31.67987 -30.51224 -29.39154 -28.77703 -27.90634 -26.71325 -25.79760 -24.45438 -23.72756 -23.45995 -20.79867 -20.36990 -19.18222 -18.22837 -17.64872 -17.43377 -17.13147 -16.85865 -16.46040 -16.00642 -15.43334 -15.13416 -14.88280 -14.56189 -14.50039 -14.17640 -13.95706 -13.54533 -13.35179 -13.29628 -13.21647 -13.09628 -12.95299 -12.70821 -12.56383 -12.45629 -12.21267 -11.96518 -11.73730 -11.70964 -11.34216 -11.07118 -10.98396 -10.80145 -10.72364 -10.28045 -10.23746 -10.13961 -10.12910 -9.93414 -9.86391 -9.76326 -9.53932 -8.94509 -8.76573 -8.19923 -6.97933 -5.80211 -3.08211 2.30869 2.52246 2.82685 3.33557 3.40197 3.47049 3.48493 3.64438 4.31248 4.56656 4.61772 4.66293 4.81887 4.83541 4.96221 5.01640 5.02768 5.13071 5.19574 5.27194 5.32655 5.33686 5.36860 5.47045 5.50367 5.56560 5.59077 5.73129 5.83368 5.84545 5.94726 6.04903 6.11279 6.18264 6.21772 6.38186 6.42066 6.43824 6.59185 6.63213 6.67128 6.73731 6.79917 6.96633 7.03703 7.09266 7.68769 7.72012 7.99111 8.38425 8.40153 9.50265 10.07213 10.42595 11.42270 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.017133 B = 0.002631 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.901138 B =10640.789425 C =11343.438438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.109 4.109 3 C -0.103 4.103 4 H 0.066 0.934 5 C 0.121 3.879 6 N -0.600 5.600 7 C 0.498 3.502 8 O -0.547 6.547 9 C 0.099 3.901 10 N -0.599 5.599 11 C 0.077 3.923 12 C 0.520 3.480 13 O -0.514 6.514 14 C 0.048 3.952 15 O -0.367 6.367 16 C 0.030 3.970 17 C 0.113 3.887 18 C -0.150 4.150 19 C 0.178 3.822 20 H 0.051 0.949 21 N -0.718 5.718 22 C -0.234 4.234 23 H 0.070 0.930 24 C -0.013 4.013 25 N -0.933 5.933 26 Si 0.903 3.097 27 H -0.281 1.281 28 H -0.293 1.293 29 H -0.293 1.293 30 H 0.049 0.951 31 H 0.047 0.953 32 H 0.052 0.948 33 H 0.076 0.924 34 H 0.061 0.939 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.114 0.886 38 H 0.109 0.891 39 H 0.064 0.936 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.043 0.957 45 H 0.044 0.956 46 H 0.091 0.909 47 H 0.087 0.913 48 H 0.067 0.933 49 H 0.050 0.950 50 H 0.074 0.926 51 H 0.384 0.616 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.095 18.627 0.277 21.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.147 4.147 3 C -0.123 4.123 4 H 0.084 0.916 5 C -0.002 4.002 6 N -0.332 5.332 7 C 0.284 3.716 8 O -0.425 6.425 9 C -0.027 4.027 10 N -0.334 5.334 11 C -0.066 4.066 12 C 0.307 3.693 13 O -0.388 6.388 14 C -0.032 4.032 15 O -0.285 6.285 16 C -0.066 4.066 17 C -0.010 4.010 18 C -0.191 4.191 19 C 0.068 3.932 20 H 0.069 0.931 21 N -0.361 5.361 22 C -0.366 4.366 23 H 0.088 0.912 24 C -0.209 4.209 25 N -0.581 5.581 26 Si 0.735 3.265 27 H -0.206 1.206 28 H -0.220 1.220 29 H -0.220 1.220 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.095 0.905 34 H 0.080 0.920 35 H 0.102 0.898 36 H 0.092 0.908 37 H 0.132 0.868 38 H 0.127 0.873 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.095 0.905 42 H 0.097 0.903 43 H 0.100 0.900 44 H 0.062 0.938 45 H 0.062 0.938 46 H 0.109 0.891 47 H 0.105 0.895 48 H 0.086 0.914 49 H 0.069 0.931 50 H 0.093 0.907 51 H 0.219 0.781 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -11.353 18.266 1.043 21.532 hybrid contribution 0.829 -0.422 -0.684 1.155 sum -10.524 17.844 0.359 20.719 Atomic orbital electron populations 1.21852 0.96859 1.00966 1.01361 1.21412 0.94247 0.95766 1.03313 1.21748 0.97355 0.96102 0.97134 0.91568 1.21664 0.98703 0.81547 0.98245 1.48147 1.08646 1.06536 1.69906 1.20964 0.87354 0.86431 0.76838 1.90643 1.14836 1.86445 1.50555 1.21392 0.90246 0.85819 1.05241 1.47307 1.39575 1.39741 1.06821 1.21904 1.02373 1.00454 0.81893 1.20189 0.82045 0.82224 0.84873 1.90739 1.63753 1.62782 1.21525 1.22249 0.96295 0.96626 0.88003 1.88024 1.55355 1.58045 1.27050 1.22837 0.90179 0.90453 1.03175 1.21850 0.79038 0.99842 1.00229 1.22594 1.01803 0.99270 0.95475 1.20220 0.89751 0.90648 0.92570 0.93105 1.42485 1.18972 1.64060 1.10573 1.19271 0.93468 1.26799 0.97040 0.91202 1.24696 0.98540 1.01563 0.96057 1.69656 1.37980 1.48232 1.02255 0.86174 0.84304 0.78923 0.77110 1.20648 1.22027 1.22033 0.93184 0.93367 0.92862 0.90525 0.92041 0.89760 0.90791 0.86825 0.87271 0.91722 0.90985 0.90487 0.90272 0.89991 0.93850 0.93758 0.89057 0.89475 0.91430 0.93091 0.90703 0.78130 0.93629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.67 37.16 0.36 -1.83 16 2 C -0.11 -1.80 5.19 -26.73 -0.14 -1.94 16 3 C -0.10 -1.75 2.14 -90.50 -0.19 -1.94 16 4 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 5 C 0.12 2.08 5.02 -3.71 -0.02 2.06 16 6 N -0.60 -9.75 2.97 -172.50 -0.51 -10.27 16 7 C 0.50 8.06 7.77 -10.98 -0.09 7.98 16 8 O -0.55 -10.49 15.84 5.55 0.09 -10.40 16 9 C 0.10 1.23 4.28 -5.20 -0.02 1.21 16 10 N -0.60 -6.98 2.36 -182.96 -0.43 -7.41 16 11 C 0.08 0.56 10.29 59.85 0.62 1.18 16 12 C 0.52 7.14 7.75 -10.98 -0.09 7.05 16 13 O -0.51 -9.44 16.08 -14.35 -0.23 -9.67 16 14 C 0.05 0.47 4.97 36.01 0.18 0.65 16 15 O -0.37 -4.41 10.24 -55.14 -0.56 -4.97 16 16 C 0.03 0.21 11.01 101.05 1.11 1.32 16 17 C 0.11 1.74 6.11 -3.48 -0.02 1.72 16 18 C -0.15 -2.49 5.79 -26.39 -0.15 -2.65 16 19 C 0.18 3.34 2.53 -67.89 -0.17 3.17 16 20 H 0.05 0.99 8.08 -51.93 -0.42 0.58 16 21 N -0.72 -16.28 3.72 -53.38 -0.20 -16.48 16 22 C -0.23 -6.04 9.93 -15.06 -0.15 -6.19 16 23 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 24 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 25 N -0.93 -26.73 13.06 55.49 0.72 -26.01 16 26 Si 0.90 21.61 29.55 -169.99 -5.02 16.59 16 27 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 28 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 29 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.77 6.70 -51.93 -0.35 0.42 16 33 H 0.08 1.44 7.70 -51.93 -0.40 1.04 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.08 1.50 5.72 -51.93 -0.30 1.20 16 36 H 0.07 1.39 6.64 -51.93 -0.34 1.05 16 37 H 0.11 1.46 6.98 -51.93 -0.36 1.10 16 38 H 0.11 1.02 7.68 -51.93 -0.40 0.62 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.32 6.44 -51.93 -0.33 -0.01 16 41 H 0.08 0.45 7.89 -51.93 -0.41 0.04 16 42 H 0.08 0.50 7.40 -51.93 -0.38 0.12 16 43 H 0.08 0.66 8.11 -51.93 -0.42 0.24 16 44 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 45 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 46 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 47 H 0.09 1.55 7.74 -51.93 -0.40 1.15 16 48 H 0.07 0.83 5.94 -51.93 -0.31 0.52 16 49 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 50 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 51 H 0.38 9.32 5.94 -40.82 -0.24 9.08 16 52 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 409.59 15.07 6.17 6.17 Total: -1.00 -34.83 409.59 -7.69 -42.52 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: -8.85 Total: 8.56 kcal Atomic # 6 Polarization: 10.22 SS G_CDS: 1.13 Total: 11.36 kcal Atomic # 7 Polarization: -59.74 SS G_CDS: -0.42 Total: -60.16 kcal Atomic # 8 Polarization: -24.34 SS G_CDS: -0.71 Total: -25.05 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -34.83 -7.69 -42.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276740390.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.569 kcal (2) G-P(sol) polarization free energy of solvation -34.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds