Wall clock time and date at job start Wed Apr 1 2020 00:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47005 * 2 1 4 4 H 1.08997 * 109.49850 * 55.06905 * 3 2 1 5 5 C 1.53196 * 109.49843 * 294.99795 * 3 2 1 6 6 N 1.46925 * 108.77419 * 185.38423 * 5 3 2 7 7 C 1.34777 * 120.62933 * 233.58799 * 6 5 3 8 8 O 1.21283 * 119.99750 * 359.97438 * 7 6 5 9 9 C 1.50702 * 119.99928 * 180.27723 * 7 6 5 10 10 N 1.46491 * 109.46957 * 179.72354 * 9 7 6 11 11 C 1.46503 * 120.00157 * 269.99880 * 10 9 7 12 12 C 1.34774 * 120.00401 * 89.99834 * 10 9 7 13 13 O 1.21281 * 119.99656 * 0.02562 * 12 10 9 14 14 C 1.50708 * 120.00400 * 179.97438 * 12 10 9 15 15 O 1.42896 * 109.47116 * 180.02562 * 14 12 10 16 16 C 1.42893 * 113.99893 * 180.02562 * 15 14 12 17 17 C 1.46931 * 118.73924 * 53.85839 * 6 5 3 18 18 C 1.53622 * 108.54424 * 306.09826 * 17 6 5 19 19 C 1.53036 * 109.24613 * 54.85288 * 18 17 6 20 20 H 1.09001 * 109.44783 * 178.49924 * 19 18 17 21 21 N 1.46499 * 109.45981 * 58.53219 * 19 18 17 22 22 C 1.36934 * 119.99878 * 84.93073 * 21 19 18 23 23 H 1.08000 * 119.99983 * 0.02562 * 22 21 19 24 24 C 1.38814 * 119.99798 * 180.02562 * 22 21 19 25 25 N 1.31613 * 120.00251 * 359.97438 * 24 22 21 26 26 Si 1.86808 * 119.99818 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.47155 * 0.02562 * 26 24 22 28 28 H 1.48497 * 109.46925 * 120.00008 * 26 24 22 29 29 H 1.48494 * 109.46996 * 239.99852 * 26 24 22 30 30 H 1.09004 * 109.47418 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47407 * 299.99985 * 1 2 3 32 32 H 1.09000 * 109.46992 * 60.00192 * 1 2 3 33 33 H 1.09002 * 109.46854 * 239.99501 * 2 1 3 34 34 H 1.09002 * 109.46444 * 120.00330 * 2 1 3 35 35 H 1.08994 * 109.58453 * 65.59846 * 5 3 2 36 36 H 1.09003 * 109.58452 * 305.16905 * 5 3 2 37 37 H 1.09004 * 109.46965 * 299.72211 * 9 7 6 38 38 H 1.08994 * 109.46990 * 59.72065 * 9 7 6 39 39 H 1.08998 * 109.47311 * 89.99613 * 11 10 9 40 40 H 1.09001 * 109.47371 * 210.00280 * 11 10 9 41 41 H 1.09003 * 109.46700 * 329.99774 * 11 10 9 42 42 H 1.08999 * 109.46957 * 300.00083 * 14 12 10 43 43 H 1.08993 * 109.46855 * 60.00139 * 14 12 10 44 44 H 1.08996 * 109.47458 * 300.00040 * 16 15 14 45 45 H 1.09001 * 109.47306 * 60.00214 * 16 15 14 46 46 H 1.09001 * 109.47624 * 179.97438 * 16 15 14 47 47 H 1.09000 * 109.58052 * 65.92898 * 17 6 5 48 48 H 1.08995 * 109.58699 * 186.35097 * 17 6 5 49 49 H 1.09003 * 109.63253 * 294.86246 * 18 17 6 50 50 H 1.08998 * 109.43170 * 174.72646 * 18 17 6 51 51 H 0.96999 * 120.00182 * 264.93250 * 21 19 18 52 52 H 0.97005 * 120.00474 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6066 1.9816 0.8424 5 6 1.6351 2.1280 -1.3088 6 7 2.2409 3.4659 -1.3490 7 6 1.4806 4.5579 -1.5634 8 8 0.2843 4.4414 -1.7259 9 6 2.1178 5.9228 -1.6081 10 7 1.0883 6.9343 -1.8592 11 6 0.7549 7.3145 -3.2341 12 6 0.4478 7.5151 -0.8254 13 8 0.7241 7.2006 0.3129 14 6 -0.6109 8.5561 -1.0837 15 8 -1.1380 9.0186 0.1614 16 6 -2.1552 10.0133 0.0283 17 6 3.6923 3.5902 -1.1570 18 6 4.0734 2.8888 0.1555 19 6 3.5656 1.4455 0.1221 20 1 3.8574 0.9368 1.0409 21 7 4.1486 0.7495 -1.0276 22 6 5.3869 0.1743 -0.9238 23 1 5.9336 0.2334 0.0057 24 6 5.9396 -0.4847 -2.0134 25 7 5.2732 -0.5572 -3.1460 26 14 7.6286 -1.2701 -1.8716 27 1 8.1631 -1.0510 -0.5035 28 1 7.5201 -2.7279 -2.1325 29 1 8.5449 -0.6562 -2.8658 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8932 -0.5139 0.8900 35 1 0.5497 2.2169 -1.3541 36 1 1.9913 1.5400 -2.1547 37 1 2.6040 6.1282 -0.6543 38 1 2.8585 5.9520 -2.4071 39 1 -0.0439 6.6725 -3.6052 40 1 0.4251 8.3533 -3.2541 41 1 1.6357 7.2009 -3.8662 42 1 -0.1721 9.3938 -1.6257 43 1 -1.4130 8.1188 -1.6781 44 1 -1.7490 10.8812 -0.4912 45 1 -2.9895 9.6057 -0.5425 46 1 -2.5034 10.3116 1.0172 47 1 4.2128 3.1191 -1.9908 48 1 3.9647 4.6442 -1.1022 49 1 3.6208 3.4143 0.9964 50 1 5.1578 2.8905 0.2660 51 1 3.6575 0.6961 -1.8624 52 1 5.6592 -1.0181 -3.9073 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276740390.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:31:48 Heat of formation + Delta-G solvation = -116.976966 kcal Electronic energy + Delta-G solvation = -31593.893520 eV Core-core repulsion = 27400.432849 eV Total energy + Delta-G solvation = -4193.460671 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.69086 -40.75699 -39.21326 -38.36635 -36.51837 -35.89592 -35.36403 -33.39864 -31.48901 -30.97771 -29.98257 -28.85182 -27.43481 -26.72930 -25.84009 -25.20762 -25.03250 -22.19521 -21.48929 -20.33797 -19.64378 -19.23731 -18.54010 -18.36184 -17.75772 -17.31559 -17.02027 -16.67311 -16.46139 -16.11576 -16.04467 -15.57967 -15.49592 -15.35540 -14.92284 -14.77926 -14.50345 -14.37270 -14.12662 -13.98930 -13.86082 -13.62243 -13.38999 -13.18908 -13.07724 -12.98173 -12.87458 -12.81687 -12.63888 -12.38543 -12.33279 -12.14953 -12.03881 -11.85033 -11.60568 -11.46793 -11.16553 -11.11776 -10.92958 -10.82318 -10.76505 -9.77425 -9.60066 -8.90821 -7.87206 -5.13164 1.35104 1.49580 1.51775 1.56167 1.59747 1.67003 2.13286 2.60838 2.96338 3.45807 3.48149 3.54414 3.80884 3.85253 4.01733 4.04147 4.07731 4.13600 4.21514 4.23323 4.30395 4.34926 4.35620 4.42445 4.44688 4.50599 4.57516 4.58863 4.67192 4.68675 4.82881 4.86178 4.87017 4.93505 4.98032 5.03053 5.14768 5.17578 5.20632 5.29413 5.31658 5.38538 5.50159 5.61945 5.65283 5.99196 6.27906 6.34567 6.43434 7.02443 7.13010 7.42497 8.17334 8.42515 9.36092 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.017133 B = 0.002631 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.901138 B =10640.789425 C =11343.438438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.104 4.104 3 C -0.093 4.093 4 H 0.074 0.926 5 C 0.128 3.872 6 N -0.601 5.601 7 C 0.493 3.507 8 O -0.580 6.580 9 C 0.100 3.900 10 N -0.597 5.597 11 C 0.069 3.931 12 C 0.507 3.493 13 O -0.574 6.574 14 C 0.051 3.949 15 O -0.410 6.410 16 C 0.025 3.975 17 C 0.119 3.881 18 C -0.144 4.144 19 C 0.173 3.827 20 H 0.044 0.956 21 N -0.722 5.722 22 C -0.224 4.224 23 H 0.074 0.926 24 C -0.072 4.072 25 N -0.967 5.967 26 Si 0.962 3.038 27 H -0.269 1.269 28 H -0.302 1.302 29 H -0.297 1.297 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.048 0.952 33 H 0.048 0.952 34 H 0.061 0.939 35 H 0.079 0.921 36 H 0.052 0.948 37 H 0.112 0.888 38 H 0.146 0.854 39 H 0.054 0.946 40 H 0.106 0.894 41 H 0.097 0.903 42 H 0.120 0.880 43 H 0.099 0.901 44 H 0.065 0.935 45 H 0.056 0.944 46 H 0.093 0.907 47 H 0.062 0.938 48 H 0.106 0.894 49 H 0.067 0.933 50 H 0.071 0.929 51 H 0.374 0.626 52 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.188 20.921 0.265 23.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.143 4.143 3 C -0.113 4.113 4 H 0.092 0.908 5 C 0.005 3.995 6 N -0.333 5.333 7 C 0.282 3.718 8 O -0.461 6.461 9 C -0.027 4.027 10 N -0.331 5.331 11 C -0.072 4.072 12 C 0.296 3.704 13 O -0.452 6.452 14 C -0.028 4.028 15 O -0.329 6.329 16 C -0.071 4.071 17 C -0.003 4.003 18 C -0.185 4.185 19 C 0.065 3.935 20 H 0.063 0.937 21 N -0.363 5.363 22 C -0.356 4.356 23 H 0.092 0.908 24 C -0.264 4.264 25 N -0.619 5.619 26 Si 0.793 3.207 27 H -0.193 1.193 28 H -0.230 1.230 29 H -0.224 1.224 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.080 0.920 35 H 0.097 0.903 36 H 0.071 0.929 37 H 0.130 0.870 38 H 0.164 0.836 39 H 0.072 0.928 40 H 0.125 0.875 41 H 0.115 0.885 42 H 0.137 0.863 43 H 0.117 0.883 44 H 0.084 0.916 45 H 0.075 0.925 46 H 0.112 0.888 47 H 0.081 0.919 48 H 0.124 0.876 49 H 0.086 0.914 50 H 0.090 0.910 51 H 0.208 0.792 52 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -11.447 20.600 1.034 23.589 hybrid contribution 0.777 -1.106 -0.648 1.499 sum -10.670 19.494 0.386 22.226 Atomic orbital electron populations 1.21781 0.94943 1.01944 1.01635 1.21334 0.95915 0.95149 1.01854 1.21646 0.96058 0.96436 0.97163 0.90762 1.21447 0.98300 0.82228 0.97520 1.48211 1.09026 1.06245 1.69860 1.21712 0.86998 0.87557 0.75566 1.90622 1.16399 1.87075 1.51990 1.21483 0.90947 0.83650 1.06586 1.47512 1.38758 1.38590 1.08198 1.22213 1.03109 1.02236 0.79688 1.21061 0.82337 0.82617 0.84372 1.90698 1.65735 1.64923 1.23866 1.22389 0.95751 0.96904 0.87783 1.87966 1.56750 1.59484 1.28702 1.23044 0.89713 0.90319 1.04033 1.21821 0.78210 1.01798 0.98500 1.22474 1.01579 0.97657 0.96789 1.20404 0.90800 0.91599 0.90744 0.93747 1.42551 1.18172 1.64308 1.11264 1.19580 0.94133 1.25163 0.96692 0.90816 1.25348 1.01694 1.03213 0.96130 1.69800 1.39405 1.49853 1.02825 0.85230 0.80825 0.77302 0.77337 1.19324 1.22961 1.22445 0.91913 0.92320 0.93272 0.93340 0.92010 0.90317 0.92933 0.87038 0.83645 0.92769 0.87538 0.88482 0.86270 0.88292 0.91617 0.92547 0.88803 0.91914 0.87609 0.91444 0.91036 0.79219 0.94386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.10 9.67 71.98 0.70 -3.41 16 2 C -0.10 -3.48 5.19 30.59 0.16 -3.32 16 3 C -0.09 -3.15 2.14 -10.71 -0.02 -3.17 16 4 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 5 C 0.13 4.49 5.02 86.36 0.43 4.92 16 6 N -0.60 -19.25 2.97 -818.06 -2.43 -21.68 16 7 C 0.49 15.56 7.77 87.66 0.68 16.24 16 8 O -0.58 -22.17 15.84 -3.04 -0.05 -22.22 16 9 C 0.10 2.27 4.28 85.64 0.37 2.64 16 10 N -0.60 -12.62 2.36 -851.14 -2.01 -14.63 16 11 C 0.07 0.79 10.29 127.77 1.31 2.11 16 12 C 0.51 13.27 7.75 87.66 0.68 13.95 16 13 O -0.57 -21.13 16.08 16.00 0.26 -20.87 16 14 C 0.05 0.87 4.97 71.24 0.35 1.23 16 15 O -0.41 -9.33 10.24 -129.94 -1.33 -10.66 16 16 C 0.02 0.29 11.01 113.37 1.25 1.54 16 17 C 0.12 3.53 6.11 86.51 0.53 4.05 16 18 C -0.14 -4.62 5.79 30.82 0.18 -4.44 16 19 C 0.17 6.46 2.53 45.02 0.11 6.57 16 20 H 0.04 1.72 8.08 -2.39 -0.02 1.70 16 21 N -0.72 -33.16 3.72 -322.81 -1.20 -34.36 16 22 C -0.22 -11.55 9.93 84.03 0.83 -10.71 16 23 H 0.07 3.70 7.83 -2.91 -0.02 3.68 16 24 C -0.07 -3.91 5.50 84.86 0.47 -3.45 16 25 N -0.97 -56.72 13.06 21.65 0.28 -56.43 16 26 Si 0.96 44.82 29.55 68.60 2.03 46.84 16 27 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 28 H -0.30 -14.37 7.11 99.48 0.71 -13.67 16 29 H -0.30 -13.90 7.11 99.48 0.71 -13.20 16 30 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 31 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.05 1.42 6.70 -2.39 -0.02 1.40 16 33 H 0.05 1.89 7.70 -2.39 -0.02 1.87 16 34 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.08 2.85 5.72 -2.39 -0.01 2.84 16 36 H 0.05 2.07 6.64 -2.39 -0.02 2.05 16 37 H 0.11 2.66 6.98 -2.38 -0.02 2.65 16 38 H 0.15 2.22 7.68 -2.39 -0.02 2.20 16 39 H 0.05 0.77 8.14 -2.39 -0.02 0.76 16 40 H 0.11 0.49 6.44 -2.39 -0.02 0.47 16 41 H 0.10 0.75 7.89 -2.39 -0.02 0.73 16 42 H 0.12 1.03 7.40 -2.39 -0.02 1.01 16 43 H 0.10 1.33 8.11 -2.39 -0.02 1.31 16 44 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 45 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 46 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 47 H 0.06 2.21 7.74 -2.39 -0.02 2.19 16 48 H 0.11 2.33 5.94 -2.39 -0.01 2.32 16 49 H 0.07 1.96 8.14 -2.39 -0.02 1.95 16 50 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 51 H 0.37 18.76 5.94 -92.71 -0.55 18.21 16 52 H 0.25 14.25 8.31 -92.70 -0.77 13.47 16 Total: -1.00 -78.54 409.59 3.94 -74.60 By element: Atomic # 1 Polarization: 34.28 SS G_CDS: 0.36 Total: 34.64 kcal Atomic # 6 Polarization: 16.73 SS G_CDS: 8.03 Total: 24.76 kcal Atomic # 7 Polarization: -121.75 SS G_CDS: -5.35 Total: -127.10 kcal Atomic # 8 Polarization: -52.62 SS G_CDS: -1.12 Total: -53.74 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Total: -78.54 3.94 -74.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276740390.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.381 kcal (2) G-P(sol) polarization free energy of solvation -78.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds