Wall clock time and date at job start Wed Apr 1 2020 00:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.46796 * 2 1 4 4 H 1.08998 * 109.52253 * 305.07135 * 3 2 1 5 5 C 1.53163 * 109.48277 * 65.15195 * 3 2 1 6 6 N 1.46929 * 108.76702 * 174.59711 * 5 3 2 7 7 C 1.34780 * 120.63204 * 126.37081 * 6 5 3 8 8 O 1.21274 * 120.00040 * 0.02562 * 7 6 5 9 9 C 1.50700 * 120.00006 * 180.02562 * 7 6 5 10 10 N 1.46500 * 109.47084 * 179.97438 * 9 7 6 11 11 C 1.46502 * 119.99400 * 90.00415 * 10 9 7 12 12 C 1.34767 * 120.00185 * 270.00107 * 10 9 7 13 13 O 1.21279 * 120.00291 * 0.02562 * 12 10 9 14 14 C 1.50709 * 120.00029 * 180.02562 * 12 10 9 15 15 O 1.42900 * 109.47024 * 179.97438 * 14 12 10 16 16 C 1.42901 * 113.99784 * 179.97438 * 15 14 12 17 17 C 1.46926 * 118.73935 * 306.38589 * 6 5 3 18 18 C 1.53190 * 108.77404 * 53.60800 * 17 6 5 19 19 C 1.53036 * 109.31618 * 305.36675 * 18 17 6 20 20 H 1.09007 * 109.46211 * 181.36516 * 19 18 17 21 21 N 1.46496 * 109.46261 * 301.34591 * 19 18 17 22 22 C 1.36945 * 119.99718 * 275.02605 * 21 19 18 23 23 H 1.07997 * 119.99756 * 359.97438 * 22 21 19 24 24 C 1.38805 * 119.99878 * 179.97438 * 22 21 19 25 25 N 1.31624 * 120.00257 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99929 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.47187 * 179.97438 * 26 24 22 28 28 H 1.48494 * 109.47141 * 300.00154 * 26 24 22 29 29 H 1.48498 * 109.47018 * 60.00200 * 26 24 22 30 30 H 1.09004 * 109.46921 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47825 * 300.00260 * 1 2 3 32 32 H 1.09003 * 109.46842 * 60.00752 * 1 2 3 33 33 H 1.08992 * 109.47516 * 239.99693 * 2 1 3 34 34 H 1.09003 * 109.46842 * 119.99248 * 2 1 3 35 35 H 1.08990 * 109.59458 * 54.80996 * 5 3 2 36 36 H 1.09005 * 109.70423 * 294.44525 * 5 3 2 37 37 H 1.08997 * 109.46940 * 299.99965 * 9 7 6 38 38 H 1.09003 * 109.46875 * 59.99884 * 9 7 6 39 39 H 1.08995 * 109.47226 * 89.99960 * 11 10 9 40 40 H 1.09005 * 109.46583 * 209.99741 * 11 10 9 41 41 H 1.09004 * 109.47276 * 329.99555 * 11 10 9 42 42 H 1.08999 * 109.46910 * 300.00035 * 14 12 10 43 43 H 1.08997 * 109.47015 * 60.00039 * 14 12 10 44 44 H 1.09000 * 109.47340 * 180.02562 * 16 15 14 45 45 H 1.09001 * 109.47443 * 300.00395 * 16 15 14 46 46 H 1.09003 * 109.47246 * 60.00073 * 16 15 14 47 47 H 1.09001 * 109.58789 * 293.82762 * 17 6 5 48 48 H 1.08992 * 109.59131 * 173.39754 * 17 6 5 49 49 H 1.09006 * 109.49869 * 185.41218 * 18 17 6 50 50 H 1.09004 * 109.51931 * 65.33623 * 18 17 6 51 51 H 0.96996 * 120.00499 * 95.02336 * 21 19 18 52 52 H 0.97001 * 119.99885 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6048 1.9827 -0.8408 5 6 1.6381 2.1264 1.3103 6 7 2.2443 3.4641 1.3505 7 6 1.4846 4.5562 1.5670 8 8 0.2886 4.4399 1.7314 9 6 2.1212 5.9216 1.6049 10 7 1.0915 6.9337 1.8527 11 6 0.7597 7.3199 3.2265 12 6 0.4496 7.5096 0.8171 13 8 0.7240 7.1897 -0.3201 14 6 -0.6093 8.5513 1.0721 15 8 -1.1380 9.0081 -0.1744 16 6 -2.1555 10.0030 -0.0445 17 6 3.6944 3.5889 1.1499 18 6 4.0733 2.8883 -0.1586 19 6 3.5652 1.4451 -0.1256 20 1 3.8546 0.9371 -1.0456 21 7 4.1506 0.7477 1.0220 22 6 5.3882 0.1715 0.9146 23 1 5.9325 0.2310 -0.0163 24 6 5.9431 -0.4888 2.0021 25 7 5.2795 -0.5616 3.1365 26 14 7.6311 -1.2754 1.8553 27 1 7.9945 -1.9120 3.1467 28 1 7.6063 -2.3046 0.7852 29 1 8.6347 -0.2342 1.5176 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3635 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8901 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5137 0.8901 35 1 1.9960 1.5375 2.1546 36 1 0.5528 2.2153 1.3606 37 1 2.8630 5.9545 2.4028 38 1 2.6058 6.1231 0.6496 39 1 1.3932 8.1521 3.5330 40 1 -0.2865 7.6220 3.2762 41 1 0.9253 6.4727 3.8921 42 1 -1.4105 8.1163 1.6695 43 1 -0.1703 9.3916 1.6099 44 1 -2.5050 10.2968 -1.0343 45 1 -2.9890 9.5976 0.5292 46 1 -1.7491 10.8733 0.4707 47 1 4.2201 3.1192 1.9813 48 1 3.9660 4.6429 1.0920 49 1 5.1575 2.8899 -0.2716 50 1 3.6193 3.4148 -0.9983 51 1 3.6616 0.6941 1.8580 52 1 5.6672 -1.0234 3.8963 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276740391.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:31:52 Heat of formation + Delta-G solvation = -93.960033 kcal Electronic energy + Delta-G solvation = -31595.911138 eV Core-core repulsion = 27403.448556 eV Total energy + Delta-G solvation = -4192.462582 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.54746 -39.60127 -37.99688 -37.42226 -35.51940 -34.42732 -33.72886 -31.68539 -30.51239 -29.40892 -28.77617 -27.90854 -26.71404 -25.79970 -24.45393 -23.72262 -23.45255 -20.80328 -20.37011 -19.17618 -18.22114 -17.63494 -17.43852 -17.13430 -16.87200 -16.45315 -15.99174 -15.44602 -15.13326 -14.89565 -14.56554 -14.50061 -14.18210 -13.96825 -13.53868 -13.39405 -13.27474 -13.20925 -13.10766 -12.97543 -12.67127 -12.54024 -12.45174 -12.21714 -11.99713 -11.73790 -11.70808 -11.34621 -11.06940 -10.96230 -10.79375 -10.70960 -10.27742 -10.25211 -10.18897 -10.12768 -9.93752 -9.85203 -9.76280 -9.53440 -8.93350 -8.77509 -8.20284 -6.97826 -5.79668 -3.07841 2.31413 2.51402 2.82153 3.33667 3.41324 3.46898 3.47080 3.64448 4.31710 4.56970 4.64818 4.68005 4.76119 4.88789 4.96558 4.99961 5.02718 5.12559 5.17983 5.28360 5.32602 5.34931 5.36744 5.42065 5.50392 5.57051 5.59263 5.73123 5.84001 5.84479 5.94628 6.04944 6.11399 6.18449 6.21792 6.38249 6.42047 6.43949 6.59252 6.63317 6.67045 6.73841 6.79916 6.96779 7.03743 7.09437 7.68012 7.71732 7.99159 8.39055 8.39630 9.50640 10.07522 10.42926 11.42669 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.017144 B = 0.002631 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.809574 B =10638.509211 C =11338.746879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.109 4.109 3 C -0.103 4.103 4 H 0.066 0.934 5 C 0.121 3.879 6 N -0.599 5.599 7 C 0.498 3.502 8 O -0.547 6.547 9 C 0.099 3.901 10 N -0.600 5.600 11 C 0.079 3.921 12 C 0.520 3.480 13 O -0.514 6.514 14 C 0.048 3.952 15 O -0.367 6.367 16 C 0.030 3.970 17 C 0.113 3.887 18 C -0.151 4.151 19 C 0.179 3.821 20 H 0.051 0.949 21 N -0.718 5.718 22 C -0.236 4.236 23 H 0.069 0.931 24 C -0.012 4.012 25 N -0.933 5.933 26 Si 0.904 3.096 27 H -0.293 1.293 28 H -0.287 1.287 29 H -0.287 1.287 30 H 0.049 0.951 31 H 0.052 0.948 32 H 0.047 0.953 33 H 0.061 0.939 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.110 0.890 38 H 0.114 0.886 39 H 0.061 0.939 40 H 0.071 0.929 41 H 0.077 0.923 42 H 0.082 0.918 43 H 0.080 0.920 44 H 0.091 0.909 45 H 0.044 0.956 46 H 0.043 0.957 47 H 0.087 0.913 48 H 0.067 0.933 49 H 0.075 0.925 50 H 0.050 0.950 51 H 0.384 0.616 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.154 18.534 -0.221 21.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.147 4.147 3 C -0.123 4.123 4 H 0.084 0.916 5 C -0.002 4.002 6 N -0.332 5.332 7 C 0.284 3.716 8 O -0.425 6.425 9 C -0.027 4.027 10 N -0.335 5.335 11 C -0.064 4.064 12 C 0.307 3.693 13 O -0.388 6.388 14 C -0.032 4.032 15 O -0.285 6.285 16 C -0.066 4.066 17 C -0.009 4.009 18 C -0.192 4.192 19 C 0.068 3.932 20 H 0.069 0.931 21 N -0.361 5.361 22 C -0.367 4.367 23 H 0.087 0.913 24 C -0.208 4.208 25 N -0.582 5.582 26 Si 0.736 3.264 27 H -0.219 1.219 28 H -0.214 1.214 29 H -0.214 1.214 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.102 0.898 37 H 0.127 0.873 38 H 0.132 0.868 39 H 0.079 0.921 40 H 0.090 0.910 41 H 0.096 0.904 42 H 0.100 0.900 43 H 0.097 0.903 44 H 0.109 0.891 45 H 0.062 0.938 46 H 0.062 0.938 47 H 0.105 0.895 48 H 0.086 0.914 49 H 0.093 0.907 50 H 0.069 0.931 51 H 0.219 0.781 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -11.415 18.162 -0.965 21.473 hybrid contribution 0.833 -0.414 0.652 1.136 sum -10.582 17.748 -0.313 20.665 Atomic orbital electron populations 1.21852 0.96861 1.00965 1.01358 1.21410 0.94242 0.95762 1.03319 1.21742 0.97373 0.96111 0.97113 0.91564 1.21658 0.98708 0.81554 0.98244 1.48146 1.08730 1.06547 1.69784 1.20957 0.87342 0.86435 0.76878 1.90644 1.14818 1.86454 1.50558 1.21380 0.90311 0.85758 1.05274 1.47313 1.39546 1.39772 1.06820 1.21860 1.01172 1.01241 0.82081 1.20199 0.82064 0.82217 0.84868 1.90738 1.63869 1.62542 1.21643 1.22246 0.96277 0.96682 0.87973 1.88026 1.55304 1.58121 1.27024 1.22839 0.90164 0.90460 1.03181 1.21757 0.79097 0.99852 1.00241 1.22524 1.01838 0.99301 0.95528 1.20218 0.89727 0.90625 0.92603 0.93102 1.42470 1.19048 1.63983 1.10565 1.19179 0.93592 1.26960 0.97006 0.91316 1.24693 0.98538 1.01513 0.96044 1.69640 1.38161 1.48125 1.02238 0.86314 0.84377 0.79209 0.76532 1.21852 1.21394 1.21394 0.93184 0.92865 0.93368 0.92035 0.90527 0.90799 0.89762 0.87254 0.86799 0.92064 0.90985 0.90428 0.90008 0.90250 0.89057 0.93770 0.93836 0.89491 0.91431 0.90668 0.93120 0.78124 0.93524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.67 37.16 0.36 -1.83 16 2 C -0.11 -1.80 5.19 -26.73 -0.14 -1.94 16 3 C -0.10 -1.75 2.14 -90.51 -0.19 -1.94 16 4 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 5 C 0.12 2.08 5.03 -3.72 -0.02 2.06 16 6 N -0.60 -9.74 2.97 -172.79 -0.51 -10.26 16 7 C 0.50 8.04 7.77 -10.98 -0.09 7.96 16 8 O -0.55 -10.46 15.84 5.56 0.09 -10.37 16 9 C 0.10 1.23 4.23 -5.19 -0.02 1.21 16 10 N -0.60 -6.98 2.36 -182.95 -0.43 -7.42 16 11 C 0.08 0.59 10.24 59.85 0.61 1.20 16 12 C 0.52 7.14 7.75 -10.99 -0.09 7.06 16 13 O -0.51 -9.45 16.08 -14.35 -0.23 -9.68 16 14 C 0.05 0.47 4.97 36.01 0.18 0.65 16 15 O -0.37 -4.41 10.24 -55.14 -0.56 -4.98 16 16 C 0.03 0.21 11.01 101.05 1.11 1.32 16 17 C 0.11 1.74 6.08 -3.71 -0.02 1.72 16 18 C -0.15 -2.50 5.78 -26.61 -0.15 -2.66 16 19 C 0.18 3.35 2.53 -67.89 -0.17 3.17 16 20 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 21 N -0.72 -16.29 3.72 -53.38 -0.20 -16.48 16 22 C -0.24 -6.09 9.93 -15.06 -0.15 -6.24 16 23 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 24 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 25 N -0.93 -26.74 13.06 55.49 0.72 -26.02 16 26 Si 0.90 21.62 29.55 -169.99 -5.02 16.59 16 27 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 28 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 29 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.77 6.70 -51.93 -0.35 0.42 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.08 1.44 7.70 -51.93 -0.40 1.04 16 35 H 0.07 1.39 6.64 -51.93 -0.34 1.05 16 36 H 0.08 1.50 5.73 -51.93 -0.30 1.20 16 37 H 0.11 1.03 7.87 -51.93 -0.41 0.62 16 38 H 0.11 1.47 6.97 -51.93 -0.36 1.11 16 39 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.07 0.42 6.44 -51.93 -0.33 0.09 16 41 H 0.08 0.61 8.07 -51.93 -0.42 0.19 16 42 H 0.08 0.66 7.40 -51.93 -0.38 0.27 16 43 H 0.08 0.51 8.11 -51.93 -0.42 0.09 16 44 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 46 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 47 H 0.09 1.55 7.74 -51.93 -0.40 1.15 16 48 H 0.07 0.83 5.93 -51.93 -0.31 0.53 16 49 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 50 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 51 H 0.38 9.33 5.94 -40.82 -0.24 9.08 16 52 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 409.84 15.07 6.18 6.18 Total: -1.00 -34.71 409.84 -7.71 -42.43 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: -8.87 Total: 8.68 kcal Atomic # 6 Polarization: 10.20 SS G_CDS: 1.13 Total: 11.32 kcal Atomic # 7 Polarization: -59.76 SS G_CDS: -0.42 Total: -60.18 kcal Atomic # 8 Polarization: -24.32 SS G_CDS: -0.71 Total: -25.02 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -34.71 -7.71 -42.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276740391.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.534 kcal (2) G-P(sol) polarization free energy of solvation -34.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds